Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0001729

Physical Location & Seq

Genomic Coordinates Reverse (-)

12525786 .. 12526681

Gene Structure 896 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1151800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGCTGAAGCAAAGCACTGAACTCAGGCCTTTGATGAGAGAGTTTGAACGCAACAGAATAAATCTTACGTTAACTAAGACGGAGGAAATGCGGCGCGCGAGAGTCCAAATCGATGAGCTGAGTTTGCTGTATGTTCAAAACTTAAATGAGGACGGTAGTTTTCTTCTCTTCACCGAGGCTGTGTTGGCCGGGTTACCATCAGAGTTTCTTAAGAGCTTAGGCAAAATTGCAGATGCTGTACTTGAACTTTGTGAGGCTGGAACAAGGAGGAGGATGGTAGCGGTGGCCTATGGAAAGAGGGGTGGAGAATTTGATTGTTTTATCTTAGAAGTTTTGGTCCAAATGAGCCATAAATTTGCTCGGTTACTTGGCTATTCAAGTTATGCAGACTATGCAGTTGATCTTAGAAAGGCAGAGGCACCCTCAAAGAGAAAAGAGGAAGGAGACCATTCGTTTGGAATTGAGGATCTGCCATATTATGTCAACAAGGCTGAAGCACAGCAGTTTAACGTGGACCTCGGAGCTCAGAAACAATACTTTCCAGTAAATTTGGTTCTATCTGGGGTATTCAAGATAGTGCAATACCTTTTTGGTTTAGGATATAAAGAAATTGAAGATGCTGAGGCTTGGCATTCTGATGTTTGCGTCAACTCAAGTTTCGGTGAACTTTGGGTCATTTCTACCCTGATATATACACAAGAGAAAGAAAATATAATCATACCTGTGTGGTGGCTCTTCAAATGGTGCATTATCAACGAAGAATGGATGACGACAGATTCTAGTGGCGTTACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005758 GO:0005829 GO:0005886 GO:0006109 GO:0006111 GO:0006508 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009889 GO:0009987 GO:0010675 GO:0010830 GO:0010906 GO:0016020 GO:0016202 GO:0016787 GO:0019222 GO:0019538 GO:0031323 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0033218 GO:0034641 GO:0042277 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043255 GO:0043603 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0048634 GO:0048641 GO:0050789 GO:0050793 GO:0050794 GO:0051147 GO:0051153 GO:0051239 GO:0062012 GO:0065007 GO:0070011 GO:0070012 GO:0070013 GO:0071704 GO:0071944 GO:0080090 GO:0140096 GO:1901564 GO:1901861 GO:1902809 GO:2000026 GO:2001014

KEGG Pathways

Metabolic & Signaling

ko04614 ko05143 map04614 map05143

Pfam Domains

Protein Families

Peptidase_M3

Protein Analysis

265

Amino Acids

30.31

Weight (kDa)

5.05

Isoelectric Point (pI)

48.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M3	PF01432	143 - 216	6.3e-12	Peptidase family M3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001729)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67690
fragaria_vesca	FvH4_4g24570 FvH4_4g24570 FvH4_4g24570 FvH4_4g24570
malus_domestica	MD02G1151800.v1.1 MD13G1110200.v1.1 MD16G1110100.v1.1 MD16G1110200.v1.1
prunus_persica	Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1
pyrus_communis	pycom13g09590 pycom16g09360
rosa_chinensis	RchiOBHm_Chr4g0431491 RchiOBHm_Chr4g0431531 RchiOBHm_Chr4g0444651
rosa_laevigata	RLG00000006910 RLG00000018869 RLG00000036429
rosa_multiflora	Rmu_sc0000543.1_g000041 Rmu_sc0001207.1_g000024
rosa_roxburghii	Rroxscaffold_5G00372940 Rroxscaffold_5G00372960 Rroxscaffold_5G00372990 Rroxscaffold_5G00373020
rosa_rugosa	Rorug04G0250600 Rorug04G0250700
rosa_samantha	Rh2AG013000 Rh2AG278200 Rh4AG306800 Rh4AG307200 Rh4AG307400 Rh4BG314800 Rh4BG315100 Rh4CG330200 Rh4DG310000 Rh4DG310100 Rh4DG421900 Rh5AG518200 Rh5DG435400 Rh6CG219500
rosa_wichuraiana	Rw4G026630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	418
AccII	CGCG	2 cut(s)	96, 98
AciI	CCGC	2 cut(s)	91, 281
AclWI	GGATC	1 cut(s)	474
AcoI	YGGCCR	1 cut(s)	186
AcsI	RAATTY	3 cut(s)	308, 353, 547
AcuI	CTGAAG	2 cut(s)	26, 513
AfaI	GTAC	1 cut(s)	240
AflII	CTTAAG	1 cut(s)	209
AgsI	TTSAA	7 cut(s)	47, 137, 245, 378, 571, 614, 739
AluBI	AGCT	3 cut(s)	118, 216, 524
AluI	AGCT	3 cut(s)	118, 216, 524
Alw21I	GWGCWC	1 cut(s)	526
Alw26I	GTCTC	1 cut(s)	438
AlwI	GGATC	1 cut(s)	474
AlwNI	CAGNNNCTG	1 cut(s)	236
AoxI	GGCC	3 cut(s)	26, 186, 285
ApoI	RAATTY	3 cut(s)	308, 353, 547
ArsI	GACNNNNNNTTYG	2 cut(s)	437, 469
AspLEI	GCGC	2 cut(s)	96, 98
AspS9I	GGNCC	2 cut(s)	337, 514
AsuC2I	CCSGG	1 cut(s)	190
AsuHPI	GGTGA	2 cut(s)	163, 674
AvaII	GGWCC	2 cut(s)	337, 514
BanI	GGYRCC	1 cut(s)	418
BanII	GRGCYC	1 cut(s)	526
Bbv12I	GWGCWC	1 cut(s)	526
BbvCI	CCTCAGC	1 cut(s)	621
BccI	CCATC	2 cut(s)	205, 268
BcnI	CCSGG	1 cut(s)	190
BcoDI	GTCTC	1 cut(s)	438
BfaI	CTAG	1 cut(s)	780
BfrI	CTTAAG	1 cut(s)	209
BisI	GCNGC	1 cut(s)	92
BlsI	GCNGC	1 cut(s)	93
Bme1390I	CCNGG	1 cut(s)	190
Bme18I	GGWCC	2 cut(s)	337, 514
BmgT120I	GGNCC	2 cut(s)	337, 514
BmiI	GGNNCC	1 cut(s)	420
BmrFI	CCNGG	1 cut(s)	190
BmsI	GCATC	2 cut(s)	223, 607
BplI	GAGNNNNNCTC	2 cut(s)	407, 439
Bpu10I	CCTNAGC	2 cut(s)	217, 621
BpuEI	CTTGAG	1 cut(s)	637
BpuMI	CCSGG	1 cut(s)	190
Bsa29I	ATCGAT	1 cut(s)	111
BsaI	GGTCTC	1 cut(s)	438
BsaJI	CCNNGG	2 cut(s)	174, 517
Bse1I	ACTGG	1 cut(s)	542
BseCI	ATCGAT	1 cut(s)	111
BseDI	CCNNGG	2 cut(s)	174, 517
BseGI	GGATG	2 cut(s)	279, 771
BseMII	CTCAG	4 cut(s)	37, 110, 539, 612
BseNI	ACTGG	1 cut(s)	542
BsePI	GCGCGC	1 cut(s)	94
BseRI	GAGGAG	1 cut(s)	283
Bsh1236I	CGCG	2 cut(s)	96, 98
BshFI	GGCC	3 cut(s)	28, 188, 287
BshNI	GGYRCC	1 cut(s)	418
BshVI	ATCGAT	1 cut(s)	111
BsiHKAI	GWGCWC	1 cut(s)	526
BsiSI	CCGG	1 cut(s)	189
BsmAI	GTCTC	1 cut(s)	438
BsmI	GAATGC	1 cut(s)	631
BsnI	GGCC	3 cut(s)	28, 188, 287
Bso31I	GGTCTC	1 cut(s)	438
Bsp1286I	GDGCHC	1 cut(s)	526
Bsp143I	GATC	2 cut(s)	400, 466
BspACI	CCGC	2 cut(s)	91, 281
BspANI	GGCC	3 cut(s)	28, 188, 287
BspCNI	CTCAG	4 cut(s)	36, 111, 538, 613
BspDI	ATCGAT	1 cut(s)	111
BspFNI	CGCG	2 cut(s)	96, 98
BspLI	GGNNCC	1 cut(s)	420
BspPI	GGATC	1 cut(s)	474
BspQI	GCTCTTC	1 cut(s)	740
BspT107I	GGYRCC	1 cut(s)	418
BspTI	CTTAAG	1 cut(s)	209
BspTNI	GGTCTC	1 cut(s)	438
BsrI	ACTGG	1 cut(s)	542
BssECI	CCNNGG	2 cut(s)	174, 517
BssHII	GCGCGC	1 cut(s)	94
BssMI	GATC	2 cut(s)	400, 466
Bst4CI	ACNGT	1 cut(s)	155
Bst6I	CTCTTC	2 cut(s)	173, 740
BstAFI	CTTAAG	1 cut(s)	209
BstAPI	GCANNNNNTGC	1 cut(s)	392
BstC8I	GCNNGC	1 cut(s)	96
BstDEI	CTNAG	8 cut(s)	23, 75, 119, 217, 325, 404, 525, 621
BstEII	GGTNACC	1 cut(s)	192
BstF5I	GGATG	2 cut(s)	279, 771
BstFNI	CGCG	2 cut(s)	96, 98
BstHHI	GCGC	2 cut(s)	96, 98
BstKTI	GATC	2 cut(s)	403, 469
BstMAI	GTCTC	1 cut(s)	438
BstMBI	GATC	2 cut(s)	400, 466
BstMWI	GCNNNNNNNGC	3 cut(s)	124, 185, 392
BstPI	GGTNACC	1 cut(s)	192
BstSCI	CCNGG	1 cut(s)	188
BstUI	CGCG	2 cut(s)	96, 98
BstX2I	RGATCY	1 cut(s)	466
BstXI	CCANNNNNNTGG	1 cut(s)	455
BstYI	RGATCY	1 cut(s)	466
Bsu15I	ATCGAT	1 cut(s)	111
BsuRI	GGCC	3 cut(s)	28, 188, 287
BsuTUI	ATCGAT	1 cut(s)	111
BtsCI	GGATG	2 cut(s)	279, 771
BtsIMutI	CAGTG	1 cut(s)	15
Cac8I	GCNNGC	1 cut(s)	96
CaiI	CAGNNNCTG	1 cut(s)	236
CfoI	GCGC	2 cut(s)	96, 98
Cfr13I	GGNCC	2 cut(s)	337, 514
ClaI	ATCGAT	1 cut(s)	111
CseI	GACGC	1 cut(s)	634
Csp6I	GTAC	1 cut(s)	239
CviQI	GTAC	1 cut(s)	239
DdeI	CTNAG	8 cut(s)	23, 75, 119, 217, 325, 404, 525, 621
DpnI	GATC	2 cut(s)	402, 468
DpnII	GATC	2 cut(s)	400, 466
EaeI	YGGCCR	1 cut(s)	186
Eam1104I	CTCTTC	2 cut(s)	173, 740
EarI	CTCTTC	2 cut(s)	173, 740
Ecl136II	GAGCTC	1 cut(s)	524
Eco147I	AGGCCT	1 cut(s)	28
Eco24I	GRGCYC	1 cut(s)	526
Eco31I	GGTCTC	1 cut(s)	438
Eco47I	GGWCC	2 cut(s)	337, 514
Eco53kI	GAGCTC	1 cut(s)	524
Eco57I	CTGAAG	2 cut(s)	26, 513
Eco91I	GGTNACC	1 cut(s)	192
EcoICRI	GAGCTC	1 cut(s)	524
EcoO65I	GGTNACC	1 cut(s)	192
EcoT38I	GRGCYC	1 cut(s)	526
Fnu4HI	GCNGC	1 cut(s)	92
FokI	GGATG	2 cut(s)	286, 778
FriOI	GRGCYC	1 cut(s)	526
Fsp4HI	GCNGC	1 cut(s)	92
FspBI	CTAG	1 cut(s)	780
GlaI	GCGC	2 cut(s)	95, 97
GluI	GCNGC	1 cut(s)	92
HaeIII	GGCC	3 cut(s)	28, 188, 287
HapII	CCGG	1 cut(s)	189
HgaI	GACGC	1 cut(s)	634
HhaI	GCGC	2 cut(s)	96, 98
Hin6I	GCGC	2 cut(s)	94, 96
HinP1I	GCGC	2 cut(s)	94, 96
HincII	GTYRAC	3 cut(s)	72, 484, 649
HindII	GTYRAC	3 cut(s)	72, 484, 649
HinfI	GANTC	2 cut(s)	102, 776
HpaI	GTTAAC	1 cut(s)	72
HpaII	CCGG	1 cut(s)	189
HphI	GGTGA	2 cut(s)	163, 674
Hpy166II	GTNNAC	5 cut(s)	72, 484, 514, 649, 665
Hpy188I	TCNGA	4 cut(s)	202, 521, 528, 637
Hpy188III	TCNNGA	1 cut(s)	571
Hpy8I	GTNNAC	5 cut(s)	72, 484, 514, 649, 665
HpyAV	CCTTC	1 cut(s)	434
HpyCH4III	ACNGT	1 cut(s)	155
HpyCH4IV	ACGT	2 cut(s)	68, 510
HpyCH4V	TGCA	5 cut(s)	230, 386, 395, 580, 747
HpyF10VI	GCNNNNNNNGC	3 cut(s)	124, 185, 392
HpyF3I	CTNAG	8 cut(s)	23, 75, 119, 217, 325, 404, 525, 621
HpySE526I	ACGT	2 cut(s)	68, 510
HspAI	GCGC	2 cut(s)	94, 96
KspAI	GTTAAC	1 cut(s)	72
Kzo9I	GATC	2 cut(s)	400, 466
LguI	GCTCTTC	1 cut(s)	740
LmnI	GCTCC	1 cut(s)	521
LpnPI	CCDG	7 cut(s)	10, 202, 243, 546, 555, 698, 735
LweI	GCATC	2 cut(s)	223, 607
MaeI	CTAG	1 cut(s)	780
MaeII	ACGT	2 cut(s)	68, 510
MaeIII	GTNAC	3 cut(s)	192, 363, 787
MalI	GATC	2 cut(s)	402, 468
MboI	GATC	2 cut(s)	400, 466
MboII	GAAGA	5 cut(s)	155, 160, 626, 727, 770
MflI	RGATCY	1 cut(s)	466
MhlI	GDGCHC	1 cut(s)	526
MluCI	AATT	6 cut(s)	225, 308, 353, 459, 547, 609
MlyI	GAGTC	1 cut(s)	111
MseI	TTAA	4 cut(s)	71, 143, 210, 507
MslI	CAYNNNNRTG	2 cut(s)	636, 722
MspCI	CTTAAG	1 cut(s)	209
MspI	CCGG	1 cut(s)	189
MspR9I	CCNGG	1 cut(s)	190
Mva1269I	GAATGC	1 cut(s)	631
MvnI	CGCG	2 cut(s)	96, 98
MwoI	GCNNNNNNNGC	3 cut(s)	124, 185, 392
NciI	CCSGG	1 cut(s)	190
NdeII	GATC	2 cut(s)	400, 466
NlaIV	GGNNCC	1 cut(s)	420
PauI	GCGCGC	1 cut(s)	94
PceI	AGGCCT	1 cut(s)	28
PciSI	GCTCTTC	1 cut(s)	740
PctI	GAATGC	1 cut(s)	631
PfeI	GAWTC	1 cut(s)	776
PkrI	GCNGC	1 cut(s)	93
PleI	GAGTC	1 cut(s)	110
PpsI	GAGTC	1 cut(s)	110
Psp124BI	GAGCTC	1 cut(s)	526
PspEI	GGTNACC	1 cut(s)	192
PspN4I	GGNNCC	1 cut(s)	420
PspPI	GGNCC	2 cut(s)	337, 514
PsrI	GAACNNNNNNTAC	2 cut(s)	537, 569
PstNI	CAGNNNCTG	1 cut(s)	236
PsuI	RGATCY	1 cut(s)	466
PteI	GCGCGC	1 cut(s)	94
RsaI	GTAC	1 cut(s)	240
RsaNI	GTAC	1 cut(s)	239
RseI	CAYNNNNRTG	2 cut(s)	636, 722
SacI	GAGCTC	1 cut(s)	526
SapI	GCTCTTC	1 cut(s)	740
SaqAI	TTAA	4 cut(s)	71, 143, 210, 507
SatI	GCNGC	1 cut(s)	92
Sau3AI	GATC	2 cut(s)	400, 466
Sau96I	GGNCC	2 cut(s)	337, 514
SchI	GAGTC	1 cut(s)	111
ScrFI	CCNGG	1 cut(s)	190
SduI	GDGCHC	1 cut(s)	526
SetI	ASST	9 cut(s)	71, 120, 218, 513, 519, 526, 588, 724, 794
SfaNI	GCATC	2 cut(s)	223, 607
SinI	GGWCC	2 cut(s)	337, 514
SmiMI	CAYNNNNRTG	2 cut(s)	636, 722
SmlI	CTYRAG	2 cut(s)	209, 652
SmoI	CTYRAG	2 cut(s)	209, 652
Sse9I	AATT	6 cut(s)	225, 308, 353, 459, 547, 609
SseBI	AGGCCT	1 cut(s)	28
SsiI	CCGC	2 cut(s)	91, 281
SspMI	CTAG	1 cut(s)	780
SstI	GAGCTC	1 cut(s)	526
StuI	AGGCCT	1 cut(s)	28
StyD4I	CCNGG	1 cut(s)	188
TaaI	ACNGT	1 cut(s)	155
TaiI	ACGT	2 cut(s)	71, 513
TaqI	TCGA	1 cut(s)	111
TasI	AATT	6 cut(s)	225, 308, 353, 459, 547, 609
TatI	WGTACW	1 cut(s)	238
TauI	GCSGC	1 cut(s)	94
TfiI	GAWTC	1 cut(s)	776
Tru1I	TTAA	4 cut(s)	71, 143, 210, 507
Tru9I	TTAA	4 cut(s)	71, 143, 210, 507
TscAI	CASTG	1 cut(s)	22
TspGWI	ACGGA	1 cut(s)	95
TspRI	CASTG	1 cut(s)	22
Vha464I	CTTAAG	1 cut(s)	209
VpaK11BI	GGWCC	2 cut(s)	337, 514
XapI	RAATTY	3 cut(s)	308, 353, 547
XspI	CTAG	1 cut(s)	780

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.