Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0001729

Physical Location & Seq

Genomic Coordinates Reverse (-)

53199906 .. 53243979

Gene Structure 44074 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG310000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1587 bp

ATGCAGCGTGTGAGAGTCCAAATTGATGAGCTAAGCTTGTGCTATATCCAAAATCTACAAGAGGATTGTTCTTTCCTTGTCTTCACTGAGACTGAGTTGGCTGGGGTACCACAAGAGTTTCTCAAGAGCTTAGACAAAGCTGAAAATGGTAAATTGAAGGTGACCCTGAAAAGTCATCATGTGGCGGCAGTACTAGAACTTTGTGAGGTTGGAACAACAAGGAAGATGGTAGCGGTGGAATATGGAAAGAGGTGCGGAGACGTCAATCTTTGTATCTTAGAAGATTTGGTCCATCTGCGCCATAAGTTTGCTCGGTTACTTGGCTATTCAAATTATGCTGACCATGCTGTTGATCTTAGAATGGCAAAGACGCCCGCAAAGGTTTTTGAGTTCTTAGAGGACATCTCCAATAGTTTGGCTGACTCAGCTATGATGGAGCTTTCTATGTTGAAAGATTTGAAGAAAAAAGAGGAAGGAGACTATCCATTTGGAGTTGAGGATCTACTATATTATGTGAAGAAGGCTGAAGAACAGCAGTTTAATTTTGACTTTGGAGCTCTCAAGCAATACTTTCCGGTAAACTTGGTTCTATCTGGGGTCTTCAAGATAGTCCAAGACCTGTTTGGTTTAAGGTTTGAGGAAATTACAGATGCTGAGGTTTGGCATTCTGATGTTTCGGCGTATTCAGTTTTTGACCTGAGTTCTGGTGAACTGTTGGGTCATTTCTACCTCGATATGTACACAAGGCAAGAAAAATATAGTCATACATGTGTGGTGGCTCTTCAAAATGGTGCTTTATCATCCAATGGATCACGTCAGATCCCAGTTGCATTATTGATATTTCAAGTCCAAAAGGATGTTATCGGTCATCCTGCATTACTGCGATTTTCTGAAGTTGTGAACCTTTTTCACGAGTTTGGCCATGTGGTCCAACATATTTGCAATCGTGCATCATTCTCCAAGTTTTCTGGTCTGGGTTTTGATCCAGACTTTGTGGAGGTTCCTGCTCAGGTGCTAGAGAATTGGTGTTATGAAAGCTTCAGTTTGAAGTTGATATCTGGCTTCCATCAGGATATGACAAAGCCTATCAAAGATGAAATGTGCAGATCCATTAAAAGATGGCGATATTCCTTTTCAGCCCTCAAAATGAAGCAAGAAATTCTTTATTATATTTCTCCTTATTTTGTCAAGAACGTAAAAGTGTCTGTATTGTCAGGTCTTTTCGACCAAATCATACATTCTGCTGAAAATGTTGACATAGTTGAGTTATTCAAGCATCTTCATCCAAGGATCATGTTAGGTTTGCCAGCACTGGAGGGTGTCAATCCAGCTTCACGGTTTCCATGTAGTGCCATTGGTTATGAATCTTCTTGTTACAGCCGTATTTGGAGCGAGGTCTTTACTGCGGATATATTTGCCTCGAAGTTTCATGATAGTTATTTGAACCAGTATGCTGGCATGCAGTTCAGGAACAAGGTATTGGCCCCAGGAGGATCAAAAGAACCGATTGAAGTGTTAACGGGCTTTCTTGGGAGAGAACCATCAACTCAAGCTTTTATCGACAGTAGATCTCAATACAGATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005758 GO:0005829 GO:0005886 GO:0006109 GO:0006111 GO:0006508 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009889 GO:0009987 GO:0010675 GO:0010830 GO:0010906 GO:0016020 GO:0016202 GO:0016787 GO:0019222 GO:0019538 GO:0031323 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0033218 GO:0034641 GO:0042277 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043255 GO:0043603 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0048634 GO:0048641 GO:0050789 GO:0050793 GO:0050794 GO:0051147 GO:0051153 GO:0051239 GO:0062012 GO:0065007 GO:0070011 GO:0070012 GO:0070013 GO:0071704 GO:0071944 GO:0080090 GO:0140096 GO:1901564 GO:1901861 GO:1902809 GO:2000026 GO:2001014

KEGG Pathways

Metabolic & Signaling

ko04614 ko05143 map04614 map05143

Pfam Domains

Protein Families

Peptidase_M3

Protein Analysis

528

Amino Acids

60.19

Weight (kDa)

5.89

Isoelectric Point (pI)

36.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M3	PF01432	67 - 522	2.7e-93	Peptidase family M3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001729)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67690
fragaria_vesca	FvH4_4g24570 FvH4_4g24570 FvH4_4g24570 FvH4_4g24570
malus_domestica	MD02G1151800.v1.1 MD13G1110200.v1.1 MD16G1110100.v1.1 MD16G1110200.v1.1
prunus_persica	Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1
pyrus_communis	pycom13g09590 pycom16g09360
rosa_chinensis	RchiOBHm_Chr4g0431491 RchiOBHm_Chr4g0431531 RchiOBHm_Chr4g0444651
rosa_laevigata	RLG00000006910 RLG00000018869 RLG00000036429
rosa_multiflora	Rmu_sc0000543.1_g000041 Rmu_sc0001207.1_g000024
rosa_roxburghii	Rroxscaffold_5G00372940 Rroxscaffold_5G00372960 Rroxscaffold_5G00372990 Rroxscaffold_5G00373020
rosa_rugosa	Rorug04G0250600 Rorug04G0250700
rosa_samantha	Rh2AG013000 Rh2AG278200 Rh4AG306800 Rh4AG307200 Rh4AG307400 Rh4BG314800 Rh4BG315100 Rh4CG330200 Rh4DG310000 Rh4DG310100 Rh4DG421900 Rh5AG518200 Rh5DG435400 Rh6CG219500
rosa_wichuraiana	Rw4G026630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	264
Acc65I	GGTACC	1 cut(s)	106
AccB1I	GGYRCC	1 cut(s)	106
AciI	CCGC	5 cut(s)	185, 233, 255, 375, 1406
AclWI	GGATC	7 cut(s)	507, 814, 817, 977, 1101, 1298, 1501
AcoI	YGGCCR	1 cut(s)	919
AcsI	RAATTY	1 cut(s)	1158
AcuI	CTGAAG	3 cut(s)	546, 912, 1024
AcyI	GRCGYC	2 cut(s)	261, 371
AfaI	GTAC	3 cut(s)	108, 192, 740
AflIII	ACRYGT	1 cut(s)	767
AjiI	CACGTC	1 cut(s)	815
AjnI	CCWGG	1 cut(s)	1486
AjuI	GAANNNNNNNTTGG	2 cut(s)	1463, 1495
Alw21I	GWGCWC	1 cut(s)	559
Alw26I	GTCTC	3 cut(s)	83, 252, 471
AlwI	GGATC	7 cut(s)	507, 814, 817, 977, 1101, 1298, 1501
AlwNI	CAGNNNCTG	1 cut(s)	653
AoxI	GGCC	2 cut(s)	919, 1482
ApeKI	GCWGC	1 cut(s)	4
ApoI	RAATTY	1 cut(s)	1158
ArsI	GACNNNNNNTTYG	2 cut(s)	470, 502
Asp718I	GGTACC	1 cut(s)	106
AspLEI	GCGC	1 cut(s)	300
AspS9I	GGNCC	3 cut(s)	289, 928, 1483
AsuHPI	GGTGA	2 cut(s)	172, 719
AvaII	GGWCC	2 cut(s)	289, 928
BalI	TGGCCA	1 cut(s)	921
BanI	GGYRCC	1 cut(s)	106
BanII	GRGCYC	1 cut(s)	559
BauI	CACGAG	1 cut(s)	911
BbsI	GAAGAC	2 cut(s)	73, 592
Bbv12I	GWGCWC	1 cut(s)	559
BbvCI	CCTCAGC	1 cut(s)	654
BbvI	GCAGC	1 cut(s)	16
BccI	CCATC	6 cut(s)	220, 300, 427, 1074, 1113, 1549
BceAI	ACGGC	1 cut(s)	1365
BciT130I	CCWGG	1 cut(s)	1488
BcoDI	GTCTC	3 cut(s)	83, 252, 471
BfaI	CTAG	2 cut(s)	194, 1016
BglII	AGATCT	1 cut(s)	1568
BisI	GCNGC	2 cut(s)	5, 186
BlpI	GCTNAGC	1 cut(s)	32
BlsI	GCNGC	2 cut(s)	6, 187
BmcAI	AGTACT	1 cut(s)	192
Bme1390I	CCNGG	1 cut(s)	1488
Bme18I	GGWCC	2 cut(s)	289, 928
BmgBI	CACGTC	1 cut(s)	815
BmgT120I	GGNCC	3 cut(s)	289, 928, 1483
BmiI	GGNNCC	3 cut(s)	108, 1002, 1485
BmrFI	CCNGG	1 cut(s)	1488
BmrI	ACTGGG	1 cut(s)	818
BmsI	GCATC	3 cut(s)	640, 959, 1285
BmuI	ACTGGG	1 cut(s)	818
BpiI	GAAGAC	2 cut(s)	73, 592
BplI	GAGNNNNNCTC	2 cut(s)	389, 421
BpmI	CTGGAG	1 cut(s)	1334
Bpu10I	CCTNAGC	2 cut(s)	654, 1008
Bpu1102I	GCTNAGC	1 cut(s)	32
BpuEI	CTTGAG	3 cut(s)	107, 545, 1533
BsaHI	GRCGYC	2 cut(s)	261, 371
BsaJI	CCNNGG	2 cut(s)	1286, 1486
BsaWI	WCCGGW	1 cut(s)	574
Bse1I	ACTGG	3 cut(s)	824, 1317, 1447
BseBI	CCWGG	1 cut(s)	1488
BseDI	CCNNGG	2 cut(s)	1286, 1486
BseGI	GGATG	4 cut(s)	800, 862, 868, 1282
BseMII	CTCAG	6 cut(s)	78, 84, 438, 645, 689, 1022
BseNI	ACTGG	3 cut(s)	824, 1317, 1447
BseXI	GCAGC	1 cut(s)	16
BseYI	CCCAGC	1 cut(s)	101
BsgI	GTGCAG	1 cut(s)	1123
BshFI	GGCC	2 cut(s)	921, 1484
BshNI	GGYRCC	1 cut(s)	106
BsiHKAI	GWGCWC	1 cut(s)	559
BsiSI	CCGG	1 cut(s)	575
BsmAI	GTCTC	3 cut(s)	83, 252, 471
BsmBI	CGTCTC	1 cut(s)	252
BsmI	GAATGC	1 cut(s)	664
BsnI	GGCC	2 cut(s)	921, 1484
Bsp1286I	GDGCHC	1 cut(s)	559
Bsp1407I	TGTACA	1 cut(s)	738
Bsp143I	GATC	9 cut(s)	352, 499, 809, 819, 982, 1106, 1290, 1493, 1568
Bsp1720I	GCTNAGC	1 cut(s)	32
BspACI	CCGC	5 cut(s)	185, 233, 255, 375, 1406
BspANI	GGCC	2 cut(s)	921, 1484
BspCNI	CTCAG	6 cut(s)	79, 85, 437, 646, 690, 1021
BspHI	TCATGA	1 cut(s)	1429
BspLI	GGNNCC	3 cut(s)	108, 1002, 1485
BspPI	GGATC	7 cut(s)	507, 814, 817, 977, 1101, 1298, 1501
BspQI	GCTCTTC	1 cut(s)	786
BspT107I	GGYRCC	1 cut(s)	106
BsrGI	TGTACA	1 cut(s)	738
BsrI	ACTGG	3 cut(s)	824, 1317, 1447
BssECI	CCNNGG	2 cut(s)	1286, 1486
BssMI	GATC	9 cut(s)	352, 499, 809, 819, 982, 1106, 1290, 1493, 1568
BssNI	GRCGYC	2 cut(s)	261, 371
BssSI	CACGAG	1 cut(s)	911
BssT1I	CCWWGG	1 cut(s)	1286
Bst2BI	CACGAG	1 cut(s)	911
Bst2UI	CCWGG	1 cut(s)	1488
Bst4CI	ACNGT	3 cut(s)	714, 1338, 1565
Bst6I	CTCTTC	1 cut(s)	786
BstACI	GRCGYC	2 cut(s)	261, 371
BstAUI	TGTACA	1 cut(s)	738
BstC8I	GCNNGC	4 cut(s)	375, 1308, 1456, 1460
BstEII	GGTNACC	1 cut(s)	160
BstF5I	GGATG	4 cut(s)	800, 862, 868, 1282
BstHHI	GCGC	1 cut(s)	300
BstKTI	GATC	9 cut(s)	355, 502, 812, 822, 985, 1109, 1293, 1496, 1571
BstMAI	GTCTC	3 cut(s)	83, 252, 471
BstMBI	GATC	9 cut(s)	352, 499, 809, 819, 982, 1106, 1290, 1493, 1568
BstMWI	GCNNNNNNNGC	2 cut(s)	344, 425
BstNI	CCWGG	1 cut(s)	1488
BstNSI	RCATGY	2 cut(s)	771, 1462
BstPI	GGTNACC	1 cut(s)	160
BstSCI	CCNGG	1 cut(s)	1486
BstV1I	GCAGC	1 cut(s)	16
BstV2I	GAAGAC	2 cut(s)	73, 592
BstX2I	RGATCY	4 cut(s)	499, 819, 1106, 1568
BstXI	CCANNNNNNTGG	2 cut(s)	415, 1454
BstYI	RGATCY	4 cut(s)	499, 819, 1106, 1568
BsuRI	GGCC	2 cut(s)	921, 1484
BtrI	CACGTC	1 cut(s)	815
BtsCI	GGATG	4 cut(s)	800, 862, 868, 1282
BtsIMutI	CAGTG	2 cut(s)	84, 1310
Cac8I	GCNNGC	4 cut(s)	375, 1308, 1456, 1460
CaiI	CAGNNNCTG	1 cut(s)	653
CciI	TCATGA	1 cut(s)	1429
CfoI	GCGC	1 cut(s)	300
Cfr13I	GGNCC	3 cut(s)	289, 928, 1483
CseI	GACGC	1 cut(s)	379
Csp6I	GTAC	3 cut(s)	107, 191, 739
CviAII	CATG	8 cut(s)	179, 344, 768, 923, 1294, 1344, 1430, 1459
CviQI	GTAC	3 cut(s)	107, 191, 739
DpnI	GATC	9 cut(s)	354, 501, 811, 821, 984, 1108, 1292, 1495, 1570
DpnII	GATC	9 cut(s)	352, 499, 809, 819, 982, 1106, 1290, 1493, 1568
EaeI	YGGCCR	1 cut(s)	919
Eam1104I	CTCTTC	1 cut(s)	786
EarI	CTCTTC	1 cut(s)	786
Ecl136II	GAGCTC	1 cut(s)	557
Eco130I	CCWWGG	1 cut(s)	1286
Eco24I	GRGCYC	1 cut(s)	559
Eco32I	GATATC	1 cut(s)	1056
Eco47I	GGWCC	2 cut(s)	289, 928
Eco53kI	GAGCTC	1 cut(s)	557
Eco57I	CTGAAG	3 cut(s)	546, 912, 1024
Eco91I	GGTNACC	1 cut(s)	160
EcoICRI	GAGCTC	1 cut(s)	557
EcoO65I	GGTNACC	1 cut(s)	160
EcoRII	CCWGG	1 cut(s)	1486
EcoRV	GATATC	1 cut(s)	1056
EcoT14I	CCWWGG	1 cut(s)	1286
EcoT38I	GRGCYC	1 cut(s)	559
ErhI	CCWWGG	1 cut(s)	1286
Esp3I	CGTCTC	1 cut(s)	252
FaeI	CATG	8 cut(s)	182, 347, 771, 926, 1297, 1347, 1433, 1462
FalI	AAGNNNNNCTT	4 cut(s)	554, 586, 1146, 1178
FatI	CATG	8 cut(s)	178, 343, 767, 922, 1293, 1343, 1429, 1458
FauI	CCCGC	1 cut(s)	382
Fnu4HI	GCNGC	2 cut(s)	5, 186
FokI	GGATG	4 cut(s)	787, 855, 869, 1269
FriOI	GRGCYC	1 cut(s)	559
Fsp4HI	GCNGC	2 cut(s)	5, 186
FspBI	CTAG	2 cut(s)	194, 1016
GlaI	GCGC	1 cut(s)	299
GluI	GCNGC	2 cut(s)	5, 186
GsaI	CCCAGC	1 cut(s)	105
GsuI	CTGGAG	1 cut(s)	1334
HaeIII	GGCC	2 cut(s)	921, 1484
HapII	CCGG	1 cut(s)	575
HgaI	GACGC	1 cut(s)	379
HhaI	GCGC	1 cut(s)	300
Hin1I	GRCGYC	2 cut(s)	261, 371
Hin1II	CATG	8 cut(s)	182, 347, 771, 926, 1297, 1347, 1433, 1462
Hin6I	GCGC	1 cut(s)	298
HinP1I	GCGC	1 cut(s)	298
HincII	GTYRAC	2 cut(s)	1255, 1518
HindII	GTYRAC	2 cut(s)	1255, 1518
HindIII	AAGCTT	3 cut(s)	34, 1036, 1551
HinfI	GANTC	3 cut(s)	15, 422, 1364
HpaI	GTTAAC	1 cut(s)	1518
HpaII	CCGG	1 cut(s)	575
HphI	GGTGA	2 cut(s)	172, 719
Hpy166II	GTNNAC	6 cut(s)	580, 710, 741, 901, 1255, 1518
Hpy188I	TCNGA	3 cut(s)	670, 819, 892
Hpy188III	TCNNGA	8 cut(s)	124, 604, 911, 986, 1070, 1189, 1430, 1468
Hpy8I	GTNNAC	6 cut(s)	580, 710, 741, 901, 1255, 1518
HpyAV	CCTTC	3 cut(s)	151, 467, 514
HpyCH4III	ACNGT	3 cut(s)	714, 1338, 1565
HpyCH4IV	ACGT	3 cut(s)	261, 814, 1194
HpyCH4V	TGCA	7 cut(s)	4, 830, 875, 942, 950, 1104, 1462
HpyF10VI	GCNNNNNNNGC	2 cut(s)	344, 425
HpySE526I	ACGT	3 cut(s)	261, 814, 1194
Hsp92I	GRCGYC	2 cut(s)	261, 371
Hsp92II	CATG	8 cut(s)	182, 347, 771, 926, 1297, 1347, 1433, 1462
HspAI	GCGC	1 cut(s)	298
KpnI	GGTACC	1 cut(s)	110
KspAI	GTTAAC	1 cut(s)	1518
Kzo9I	GATC	9 cut(s)	352, 499, 809, 819, 982, 1106, 1290, 1493, 1568
LguI	GCTCTTC	1 cut(s)	786
LmnI	GCTCC	3 cut(s)	436, 554, 1389
Lsp1109I	GCAGC	1 cut(s)	16
LweI	GCATC	3 cut(s)	640, 959, 1285
MaeI	CTAG	2 cut(s)	194, 1016
MaeII	ACGT	3 cut(s)	261, 814, 1194
MaeIII	GTNAC	3 cut(s)	160, 315, 1373
MalI	GATC	9 cut(s)	354, 501, 811, 821, 984, 1108, 1292, 1495, 1570
MboI	GATC	9 cut(s)	352, 499, 809, 819, 982, 1106, 1290, 1493, 1568
MflI	RGATCY	4 cut(s)	499, 819, 1106, 1568
MhlI	GDGCHC	1 cut(s)	559
MlsI	TGGCCA	1 cut(s)	921
MluCI	AATT	7 cut(s)	21, 152, 331, 541, 642, 1021, 1158
MluNI	TGGCCA	1 cut(s)	921
MlyI	GAGTC	2 cut(s)	24, 416
MmeI	TCCRAC	2 cut(s)	190, 955
Mox20I	TGGCCA	1 cut(s)	921
MscI	TGGCCA	1 cut(s)	921
MseI	TTAA	4 cut(s)	540, 629, 1113, 1517
MslI	CAYNNNNRTG	2 cut(s)	669, 768
Msp20I	TGGCCA	1 cut(s)	921
MspI	CCGG	1 cut(s)	575
MspR9I	CCNGG	1 cut(s)	1488
Mva1269I	GAATGC	1 cut(s)	664
MvaI	CCWGG	1 cut(s)	1488
MwoI	GCNNNNNNNGC	2 cut(s)	344, 425
NdeII	GATC	9 cut(s)	352, 499, 809, 819, 982, 1106, 1290, 1493, 1568
NlaIII	CATG	8 cut(s)	182, 347, 771, 926, 1297, 1347, 1433, 1462
NlaIV	GGNNCC	3 cut(s)	108, 1002, 1485
NmuCI	GTSAC	1 cut(s)	160
NspI	RCATGY	2 cut(s)	771, 1462
PaeI	GCATGC	1 cut(s)	1462
PagI	TCATGA	1 cut(s)	1429
PciI	ACATGT	1 cut(s)	767
PciSI	GCTCTTC	1 cut(s)	786
PctI	GAATGC	1 cut(s)	664
PfeI	GAWTC	1 cut(s)	1364
PkrI	GCNGC	2 cut(s)	6, 187
PleI	GAGTC	2 cut(s)	23, 416
PpsI	GAGTC	2 cut(s)	23, 416
PscI	ACATGT	1 cut(s)	767
Psp124BI	GAGCTC	1 cut(s)	559
Psp6I	CCWGG	1 cut(s)	1486
PspEI	GGTNACC	1 cut(s)	160
PspFI	CCCAGC	1 cut(s)	101
PspGI	CCWGG	1 cut(s)	1486
PspN4I	GGNNCC	3 cut(s)	108, 1002, 1485
PspPI	GGNCC	3 cut(s)	289, 928, 1483
PsrI	GAACNNNNNNTAC	2 cut(s)	570, 602
PstNI	CAGNNNCTG	1 cut(s)	653
PsuI	RGATCY	4 cut(s)	499, 819, 1106, 1568
RsaI	GTAC	3 cut(s)	108, 192, 740
RsaNI	GTAC	3 cut(s)	107, 191, 739
RseI	CAYNNNNRTG	2 cut(s)	669, 768
SacI	GAGCTC	1 cut(s)	559
SapI	GCTCTTC	1 cut(s)	786
SaqAI	TTAA	4 cut(s)	540, 629, 1113, 1517
SatI	GCNGC	2 cut(s)	5, 186
Sau3AI	GATC	9 cut(s)	352, 499, 809, 819, 982, 1106, 1290, 1493, 1568
Sau96I	GGNCC	3 cut(s)	289, 928, 1483
ScaI	AGTACT	1 cut(s)	192
SchI	GAGTC	2 cut(s)	24, 416
ScrFI	CCNGG	1 cut(s)	1488
SduI	GDGCHC	1 cut(s)	559
SfaNI	GCATC	3 cut(s)	640, 959, 1285
SinI	GGWCC	2 cut(s)	289, 928
SmiMI	CAYNNNNRTG	2 cut(s)	669, 768
SmlI	CTYRAG	3 cut(s)	122, 560, 1548
SmoI	CTYRAG	3 cut(s)	122, 560, 1548
SphI	GCATGC	1 cut(s)	1462
Sse9I	AATT	7 cut(s)	21, 152, 331, 541, 642, 1021, 1158
SsiI	CCGC	5 cut(s)	185, 233, 255, 375, 1406
SspMI	CTAG	2 cut(s)	194, 1016
SstI	GAGCTC	1 cut(s)	559
StyD4I	CCNGG	1 cut(s)	1486
StyI	CCWWGG	1 cut(s)	1286
TaaI	ACNGT	3 cut(s)	714, 1338, 1565
TaiI	ACGT	3 cut(s)	264, 817, 1197
TaqI	TCGA	4 cut(s)	732, 1224, 1421, 1560
TaqII	GACCGA	1 cut(s)	854
TasI	AATT	7 cut(s)	21, 152, 331, 541, 642, 1021, 1158
TatI	WGTACW	2 cut(s)	190, 738
TauI	GCSGC	1 cut(s)	188
TfiI	GAWTC	1 cut(s)	1364
Tru1I	TTAA	4 cut(s)	540, 629, 1113, 1517
Tru9I	TTAA	4 cut(s)	540, 629, 1113, 1517
TscAI	CASTG	2 cut(s)	91, 1317
TseFI	GTSAC	1 cut(s)	160
TseI	GCWGC	1 cut(s)	4
Tsp45I	GTSAC	1 cut(s)	160
TspDTI	ATGAA	6 cut(s)	1047, 1110, 1163, 1271, 1377, 1418
TspRI	CASTG	2 cut(s)	91, 1317
VpaK11BI	GGWCC	2 cut(s)	289, 928
XapI	RAATTY	1 cut(s)	1158
XceI	RCATGY	2 cut(s)	771, 1462
XcmI	CCANNNNNNNNNTGG	1 cut(s)	620
XspI	CTAG	2 cut(s)	194, 1016
ZraI	GACGTC	1 cut(s)	262
ZrmI	AGTACT	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.