Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001729

Physical Location & Seq

Genomic Coordinates Forward (+)

69488513 .. 69489488

Gene Structure 976 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG435400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGTTCTCATCTCTCTCTCCGCTGTTTCCTCGAGTTACGAGATACTATGCCCGCCTCACTGCTTTAAGGTCCTTCTCCTTCTGCAGGATCCCACCCCCACCAGGCAAGTTCTTTTCTATCTCACTATGCCTATTGCGTGAGGATGTGTACCATGTTGTCAAAGCTTTCGCTATGATAGGAGAGTGGGTGAATGCTGAAGCAAAGCTCTATACTCAAGTCTTGATGAGAGACTTTGAACATAATGGATTGAATCTTACTTTAACCAAGAGAGAGGAGATGCAGCGTGTGAGAGTCCAAATTGATGAGCTAAGCTTGCGCTATATCCAAAATCTACATGAGGATTTTTCTTTCCTTGTCTTCACTGAGACTGAGTTGGCTGGGGTACCACAAGAGTTTCTCAAGACTTATACTTTGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005758 GO:0005829 GO:0005886 GO:0006109 GO:0006111 GO:0006508 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009889 GO:0009987 GO:0010675 GO:0010830 GO:0010906 GO:0016020 GO:0016202 GO:0016787 GO:0019222 GO:0019538 GO:0031323 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0033218 GO:0034641 GO:0042277 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043255 GO:0043603 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0048634 GO:0048641 GO:0050789 GO:0050793 GO:0050794 GO:0051147 GO:0051153 GO:0051239 GO:0062012 GO:0065007 GO:0070011 GO:0070012 GO:0070013 GO:0071704 GO:0071944 GO:0080090 GO:0140096 GO:1901564 GO:1901861 GO:1902809 GO:2000026 GO:2001014

KEGG Pathways

Metabolic & Signaling

ko04614 ko05143 map04614 map05143

Pfam Domains

Protein Families

Peptidase_M3

Protein Analysis

139

Amino Acids

16.38

Weight (kDa)

7.8

Isoelectric Point (pI)

34.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001729)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67690
fragaria_vesca	FvH4_4g24570 FvH4_4g24570 FvH4_4g24570 FvH4_4g24570
malus_domestica	MD02G1151800.v1.1 MD13G1110200.v1.1 MD16G1110100.v1.1 MD16G1110200.v1.1
prunus_persica	Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1
pyrus_communis	pycom13g09590 pycom16g09360
rosa_chinensis	RchiOBHm_Chr4g0431491 RchiOBHm_Chr4g0431531 RchiOBHm_Chr4g0444651
rosa_laevigata	RLG00000006910 RLG00000018869 RLG00000036429
rosa_multiflora	Rmu_sc0000543.1_g000041 Rmu_sc0001207.1_g000024
rosa_roxburghii	Rroxscaffold_5G00372940 Rroxscaffold_5G00372960 Rroxscaffold_5G00372990 Rroxscaffold_5G00373020
rosa_rugosa	Rorug04G0250600 Rorug04G0250700
rosa_samantha	Rh2AG013000 Rh2AG278200 Rh4AG306800 Rh4AG307200 Rh4AG307400 Rh4BG314800 Rh4BG315100 Rh4CG330200 Rh4DG310000 Rh4DG310100 Rh4DG421900 Rh5AG518200 Rh5DG435400 Rh6CG219500
rosa_wichuraiana	Rw4G026630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	382
AccB1I	GGYRCC	1 cut(s)	382
AciI	CCGC	2 cut(s)	20, 52
AclWI	GGATC	2 cut(s)	82, 95
AcuI	CTGAAG	1 cut(s)	216
AfaI	GTAC	2 cut(s)	149, 384
AfiI	CCNNNNNNNGG	2 cut(s)	84, 101
AgsI	TTSAA	2 cut(s)	236, 250
AjnI	CCWGG	1 cut(s)	100
AluBI	AGCT	4 cut(s)	164, 205, 307, 312
AluI	AGCT	4 cut(s)	164, 205, 307, 312
Alw26I	GTCTC	2 cut(s)	222, 359
AlwI	GGATC	2 cut(s)	82, 95
Ama87I	CYCGRG	1 cut(s)	30
ApeKI	GCWGC	1 cut(s)	280
ArsI	GACNNNNNNTTYG	1 cut(s)	394
Asp718I	GGTACC	1 cut(s)	382
AspLEI	GCGC	1 cut(s)	318
AspS9I	GGNCC	1 cut(s)	69
AsuHPI	GGTGA	1 cut(s)	199
AvaI	CYCGRG	1 cut(s)	30
AvaII	GGWCC	1 cut(s)	69
BamHI	GGATCC	1 cut(s)	87
BanI	GGYRCC	1 cut(s)	382
BbsI	GAAGAC	1 cut(s)	349
BbvI	GCAGC	1 cut(s)	292
BciT130I	CCWGG	1 cut(s)	102
BcoDI	GTCTC	2 cut(s)	222, 359
BfmI	CTRYAG	1 cut(s)	82
BisI	GCNGC	1 cut(s)	281
BlpI	GCTNAGC	1 cut(s)	308
BlsI	GCNGC	1 cut(s)	282
Bme1390I	CCNGG	1 cut(s)	102
Bme18I	GGWCC	1 cut(s)	69
BmeT110I	CYCGRG	1 cut(s)	30
BmgT120I	GGNCC	1 cut(s)	69
BmiI	GGNNCC	2 cut(s)	89, 384
BmrFI	CCNGG	1 cut(s)	102
BmsI	GCATC	1 cut(s)	267
BpiI	GAAGAC	1 cut(s)	349
Bpu1102I	GCTNAGC	1 cut(s)	308
BpuEI	CTTGAG	2 cut(s)	198, 383
BsaXI	ACNNNNNCTCC	2 cut(s)	171, 201
Bsc4I	CCNNNNNNNGG	2 cut(s)	84, 101
BseBI	CCWGG	1 cut(s)	102
BseGI	GGATG	1 cut(s)	148
BseLI	CCNNNNNNNGG	2 cut(s)	84, 101
BseMII	CTCAG	2 cut(s)	354, 360
BseRI	GAGGAG	1 cut(s)	287
BseXI	GCAGC	1 cut(s)	292
BseYI	CCCAGC	1 cut(s)	377
BshNI	GGYRCC	1 cut(s)	382
BsiHKCI	CYCGRG	1 cut(s)	30
BslI	CCNNNNNNNGG	2 cut(s)	84, 101
BsmAI	GTCTC	2 cut(s)	222, 359
BsmI	GAATGC	1 cut(s)	196
BsoBI	CYCGRG	1 cut(s)	30
Bsp143I	GATC	1 cut(s)	87
Bsp1720I	GCTNAGC	1 cut(s)	308
BspACI	CCGC	2 cut(s)	20, 52
BspCNI	CTCAG	2 cut(s)	355, 361
BspLI	GGNNCC	2 cut(s)	89, 384
BspMAI	CTGCAG	1 cut(s)	86
BspPI	GGATC	2 cut(s)	82, 95
BspT107I	GGYRCC	1 cut(s)	382
BssMI	GATC	1 cut(s)	87
Bst2UI	CCWGG	1 cut(s)	102
BstC8I	GCNNGC	2 cut(s)	52, 314
BstDEI	CTNAG	3 cut(s)	308, 363, 369
BstENI	CCTNNNNNAGG	1 cut(s)	82
BstF5I	GGATG	1 cut(s)	148
BstHHI	GCGC	1 cut(s)	318
BstKTI	GATC	1 cut(s)	90
BstMAI	GTCTC	2 cut(s)	222, 359
BstMBI	GATC	1 cut(s)	87
BstMWI	GCNNNNNNNGC	1 cut(s)	313
BstNI	CCWGG	1 cut(s)	102
BstSCI	CCNGG	1 cut(s)	100
BstSFI	CTRYAG	1 cut(s)	82
BstV1I	GCAGC	1 cut(s)	292
BstV2I	GAAGAC	1 cut(s)	349
BstX2I	RGATCY	1 cut(s)	87
BstYI	RGATCY	1 cut(s)	87
BtsCI	GGATG	1 cut(s)	148
BtsI	GCAGTG	1 cut(s)	57
BtsIMutI	CAGTG	2 cut(s)	57, 360
Cac8I	GCNNGC	2 cut(s)	52, 314
CfoI	GCGC	1 cut(s)	318
Cfr13I	GGNCC	1 cut(s)	69
Csp6I	GTAC	2 cut(s)	148, 383
CviAII	CATG	2 cut(s)	152, 335
CviJI	RGCY	5 cut(s)	164, 205, 307, 312, 377
CviKI_1	RGCY	5 cut(s)	164, 205, 307, 312, 377
CviQI	GTAC	2 cut(s)	148, 383
DdeI	CTNAG	3 cut(s)	308, 363, 369
DpnI	GATC	1 cut(s)	89
DpnII	GATC	1 cut(s)	87
Eco47I	GGWCC	1 cut(s)	69
Eco57I	CTGAAG	1 cut(s)	216
Eco88I	CYCGRG	1 cut(s)	30
EcoNI	CCTNNNNNAGG	1 cut(s)	82
EcoO109I	RGGNCCY	1 cut(s)	69
EcoRII	CCWGG	1 cut(s)	100
FaeI	CATG	2 cut(s)	155, 338
FaiI	YATR	9 cut(s)	48, 127, 153, 173, 210, 240, 321, 336, 408
FatI	CATG	2 cut(s)	151, 334
FauI	CCCGC	1 cut(s)	59
Fnu4HI	GCNGC	1 cut(s)	281
FokI	GGATG	1 cut(s)	155
Fsp4HI	GCNGC	1 cut(s)	281
GlaI	GCGC	1 cut(s)	317
GluI	GCNGC	1 cut(s)	281
GsaI	CCCAGC	1 cut(s)	381
HhaI	GCGC	1 cut(s)	318
Hin1II	CATG	2 cut(s)	155, 338
Hin6I	GCGC	1 cut(s)	316
HinP1I	GCGC	1 cut(s)	316
HindIII	AAGCTT	2 cut(s)	162, 310
HinfI	GANTC	2 cut(s)	250, 291
HphI	GGTGA	1 cut(s)	199
Hpy166II	GTNNAC	1 cut(s)	148
Hpy188III	TCNNGA	2 cut(s)	220, 400
Hpy8I	GTNNAC	1 cut(s)	148
HpyAV	CCTTC	2 cut(s)	82, 88
HpyCH4V	TGCA	2 cut(s)	84, 280
HpyF10VI	GCNNNNNNNGC	1 cut(s)	313
HpyF3I	CTNAG	3 cut(s)	308, 363, 369
Hsp92II	CATG	2 cut(s)	155, 338
HspAI	GCGC	1 cut(s)	316
KpnI	GGTACC	1 cut(s)	386
Kzo9I	GATC	1 cut(s)	87
LpnPI	CCDG	4 cut(s)	70, 87, 114, 363
Lsp1109I	GCAGC	1 cut(s)	292
LweI	GCATC	1 cut(s)	267
MaeIII	GTNAC	1 cut(s)	34
MalI	GATC	1 cut(s)	89
MboI	GATC	1 cut(s)	87
MboII	GAAGA	1 cut(s)	349
MflI	RGATCY	1 cut(s)	87
MluCI	AATT	1 cut(s)	297
MlyI	GAGTC	1 cut(s)	300
MnlI	CCTC	5 cut(s)	39, 65, 133, 265, 331
MseI	TTAA	2 cut(s)	65, 260
MspA1I	CMGCKG	1 cut(s)	22
MspR9I	CCNGG	1 cut(s)	102
Mva1269I	GAATGC	1 cut(s)	196
MvaI	CCWGG	1 cut(s)	102
MwoI	GCNNNNNNNGC	1 cut(s)	313
NdeII	GATC	1 cut(s)	87
NlaIII	CATG	2 cut(s)	155, 338
NlaIV	GGNNCC	2 cut(s)	89, 384
PaeR7I	CTCGAG	1 cut(s)	30
PctI	GAATGC	1 cut(s)	196
PfeI	GAWTC	1 cut(s)	250
PkrI	GCNGC	1 cut(s)	282
PleI	GAGTC	1 cut(s)	299
PpsI	GAGTC	1 cut(s)	299
PpuMI	RGGWCCY	1 cut(s)	69
Psp5II	RGGWCCY	1 cut(s)	69
Psp6I	CCWGG	1 cut(s)	100
PspFI	CCCAGC	1 cut(s)	377
PspGI	CCWGG	1 cut(s)	100
PspN4I	GGNNCC	2 cut(s)	89, 384
PspPI	GGNCC	1 cut(s)	69
PspPPI	RGGWCCY	1 cut(s)	69
PspXI	VCTCGAGB	1 cut(s)	30
PstI	CTGCAG	1 cut(s)	86
PsuI	RGATCY	1 cut(s)	87
RsaI	GTAC	2 cut(s)	149, 384
RsaNI	GTAC	2 cut(s)	148, 383
SaqAI	TTAA	2 cut(s)	65, 260
SatI	GCNGC	1 cut(s)	281
Sau3AI	GATC	1 cut(s)	87
Sau96I	GGNCC	1 cut(s)	69
SchI	GAGTC	1 cut(s)	300
ScrFI	CCNGG	1 cut(s)	102
SetI	ASST	5 cut(s)	71, 166, 207, 309, 314
SfaNI	GCATC	1 cut(s)	267
SfcI	CTRYAG	1 cut(s)	82
Sfr274I	CTCGAG	1 cut(s)	30
SinI	GGWCC	1 cut(s)	69
SlaI	CTCGAG	1 cut(s)	30
SmlI	CTYRAG	3 cut(s)	30, 213, 398
SmoI	CTYRAG	3 cut(s)	30, 213, 398
Sse9I	AATT	1 cut(s)	297
SsiI	CCGC	2 cut(s)	20, 52
StyD4I	CCNGG	1 cut(s)	100
TaqI	TCGA	1 cut(s)	31
TasI	AATT	1 cut(s)	297
TfiI	GAWTC	1 cut(s)	250
Tru1I	TTAA	2 cut(s)	65, 260
Tru9I	TTAA	2 cut(s)	65, 260
TscAI	CASTG	2 cut(s)	64, 367
TseI	GCWGC	1 cut(s)	280
TspRI	CASTG	2 cut(s)	64, 367
VpaK11BI	GGWCC	1 cut(s)	69
XagI	CCTNNNNNAGG	1 cut(s)	82
XhoI	CTCGAG	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.