Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001729

Physical Location & Seq

Genomic Coordinates Forward (+)

80514054 .. 80514721

Gene Structure 668 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036429

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGTCGAGCCCAAGTTGGGTTTCTCTTTCTAGCTGCGAGGTTAAAGAACAGAGACCCATTTGCAGAGCATTGGGTCACAAGAACAACAGCAAGAAGAAAGTTGCGGATCTTCAGGGCTCGAAGGTTCGAGTTATTATATCGGCTTCGGAGATTTTGAAATTGGTCGACCGAGTCATTTCCAAGTCAAAAGAGGTCTATGACGCTGTGGCTTCAATTCCCCTAGATAAGTCTTGTGTGTTTCCAAAGATGGTGTCTACCAGTGATGATGTTCGAAAAGCAAGTGCCGAAGCCGAGCCGAGAATTGCGCACATGTTCTACGCATTTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005758 GO:0005829 GO:0005886 GO:0006109 GO:0006111 GO:0006508 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009889 GO:0009987 GO:0010675 GO:0010830 GO:0010906 GO:0016020 GO:0016202 GO:0016787 GO:0019222 GO:0019538 GO:0031323 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0033218 GO:0034641 GO:0042277 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043255 GO:0043603 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0048634 GO:0048641 GO:0050789 GO:0050793 GO:0050794 GO:0051147 GO:0051153 GO:0051239 GO:0062012 GO:0065007 GO:0070011 GO:0070012 GO:0070013 GO:0071704 GO:0071944 GO:0080090 GO:0140096 GO:1901564 GO:1901861 GO:1902809 GO:2000026 GO:2001014

KEGG Pathways

Metabolic & Signaling

ko04614 ko05143 map04614 map05143

Pfam Domains

Protein Families

Peptidase_M3

Protein Analysis

110

Amino Acids

12.04

Weight (kDa)

9.41

Isoelectric Point (pI)

46.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001729)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67690
fragaria_vesca	FvH4_4g24570 FvH4_4g24570 FvH4_4g24570 FvH4_4g24570
malus_domestica	MD02G1151800.v1.1 MD13G1110200.v1.1 MD16G1110100.v1.1 MD16G1110200.v1.1
prunus_persica	Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1
pyrus_communis	pycom13g09590 pycom16g09360
rosa_chinensis	RchiOBHm_Chr4g0431491 RchiOBHm_Chr4g0431531 RchiOBHm_Chr4g0444651
rosa_laevigata	RLG00000006910 RLG00000018869 RLG00000036429
rosa_multiflora	Rmu_sc0000543.1_g000041 Rmu_sc0001207.1_g000024
rosa_roxburghii	Rroxscaffold_5G00372940 Rroxscaffold_5G00372960 Rroxscaffold_5G00372990 Rroxscaffold_5G00373020
rosa_rugosa	Rorug04G0250600 Rorug04G0250700
rosa_samantha	Rh2AG013000 Rh2AG278200 Rh4AG306800 Rh4AG307200 Rh4AG307400 Rh4BG314800 Rh4BG315100 Rh4CG330200 Rh4DG310000 Rh4DG310100 Rh4DG421900 Rh5AG518200 Rh5DG435400 Rh6CG219500
rosa_wichuraiana	Rw4G026630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	306
AccI	GTMKAC	2 cut(s)	165, 254
AciI	CCGC	1 cut(s)	104
AclWI	GGATC	1 cut(s)	114
AcuI	CTGAAG	1 cut(s)	95
AfiI	CCNNNNNNNGG	1 cut(s)	16
AflIII	ACRYGT	1 cut(s)	309
AgsI	TTSAA	2 cut(s)	157, 213
AjuI	GAANNNNNNNTTGG	1 cut(s)	36
AluBI	AGCT	1 cut(s)	33
AluI	AGCT	1 cut(s)	33
Alw26I	GTCTC	1 cut(s)	46
AlwI	GGATC	1 cut(s)	114
ApeKI	GCWGC	1 cut(s)	33
ArsI	GACNNNNNNTTYG	2 cut(s)	236, 268
AspLEI	GCGC	1 cut(s)	307
AsuII	TTCGAA	1 cut(s)	271
BanII	GRGCYC	2 cut(s)	11, 119
BbvI	GCAGC	1 cut(s)	20
BccI	CCATC	1 cut(s)	241
BcoDI	GTCTC	1 cut(s)	46
BfaI	CTAG	2 cut(s)	30, 221
BisI	GCNGC	1 cut(s)	34
BlsI	GCNGC	1 cut(s)	35
Bpu14I	TTCGAA	1 cut(s)	271
BsaI	GGTCTC	1 cut(s)	46
Bsc4I	CCNNNNNNNGG	1 cut(s)	16
Bse1I	ACTGG	1 cut(s)	258
BseLI	CCNNNNNNNGG	1 cut(s)	16
BseNI	ACTGG	1 cut(s)	258
BseXI	GCAGC	1 cut(s)	20
Bsh1285I	CGRYCG	1 cut(s)	169
BsiEI	CGRYCG	1 cut(s)	169
BslI	CCNNNNNNNGG	1 cut(s)	16
BsmAI	GTCTC	1 cut(s)	46
Bso31I	GGTCTC	1 cut(s)	46
Bsp119I	TTCGAA	1 cut(s)	271
Bsp1286I	GDGCHC	2 cut(s)	11, 119
Bsp143I	GATC	1 cut(s)	106
BspACI	CCGC	1 cut(s)	104
BspPI	GGATC	1 cut(s)	114
BspT104I	TTCGAA	1 cut(s)	271
BspTNI	GGTCTC	1 cut(s)	46
BsrI	ACTGG	1 cut(s)	258
BssMI	GATC	1 cut(s)	106
BstBI	TTCGAA	1 cut(s)	271
BstHHI	GCGC	1 cut(s)	307
BstKTI	GATC	1 cut(s)	109
BstMAI	GTCTC	1 cut(s)	46
BstMBI	GATC	1 cut(s)	106
BstMCI	CGRYCG	1 cut(s)	169
BstNSI	RCATGY	1 cut(s)	313
BstV1I	GCAGC	1 cut(s)	20
BstX2I	RGATCY	1 cut(s)	106
BstYI	RGATCY	1 cut(s)	106
BtsIMutI	CAGTG	1 cut(s)	265
CfoI	GCGC	1 cut(s)	307
CseI	GACGC	1 cut(s)	209
CviAII	CATG	1 cut(s)	310
CviJI	RGCY	7 cut(s)	9, 33, 117, 143, 209, 290, 295
CviKI_1	RGCY	7 cut(s)	9, 33, 117, 143, 209, 290, 295
DpnI	GATC	1 cut(s)	108
DpnII	GATC	1 cut(s)	106
Eco24I	GRGCYC	2 cut(s)	11, 119
Eco31I	GGTCTC	1 cut(s)	46
Eco57I	CTGAAG	1 cut(s)	95
EcoT38I	GRGCYC	2 cut(s)	11, 119
FaeI	CATG	1 cut(s)	313
FaiI	YATR	3 cut(s)	137, 198, 311
FatI	CATG	1 cut(s)	309
FblI	GTMKAC	2 cut(s)	165, 254
Fnu4HI	GCNGC	1 cut(s)	34
FriOI	GRGCYC	2 cut(s)	11, 119
Fsp4HI	GCNGC	1 cut(s)	34
FspBI	CTAG	2 cut(s)	30, 221
FspI	TGCGCA	1 cut(s)	306
GlaI	GCGC	1 cut(s)	306
GluI	GCNGC	1 cut(s)	34
HgaI	GACGC	1 cut(s)	209
HhaI	GCGC	1 cut(s)	307
Hin1II	CATG	1 cut(s)	313
Hin6I	GCGC	1 cut(s)	305
HinP1I	GCGC	1 cut(s)	305
HincII	GTYRAC	1 cut(s)	166
HindII	GTYRAC	1 cut(s)	166
HinfI	GANTC	1 cut(s)	171
Hpy166II	GTNNAC	2 cut(s)	166, 255
Hpy188I	TCNGA	1 cut(s)	148
Hpy8I	GTNNAC	2 cut(s)	166, 255
HpyAV	CCTTC	1 cut(s)	115
HpyCH4V	TGCA	1 cut(s)	63
Hsp92II	CATG	1 cut(s)	313
HspAI	GCGC	1 cut(s)	305
Kzo9I	GATC	1 cut(s)	106
LpnPI	CCDG	2 cut(s)	98, 271
Lsp1109I	GCAGC	1 cut(s)	20
MaeI	CTAG	2 cut(s)	30, 221
MaeIII	GTNAC	1 cut(s)	74
MalI	GATC	1 cut(s)	108
MboI	GATC	1 cut(s)	106
MboII	GAAGA	2 cut(s)	101, 106
MflI	RGATCY	1 cut(s)	106
MhlI	GDGCHC	2 cut(s)	11, 119
MluCI	AATT	3 cut(s)	158, 213, 300
MlyI	GAGTC	1 cut(s)	180
MnlI	CCTC	2 cut(s)	31, 184
MseI	TTAA	1 cut(s)	42
NdeII	GATC	1 cut(s)	106
NlaIII	CATG	1 cut(s)	313
NmeAIII	GCCGAG	2 cut(s)	316, 321
NmuCI	GTSAC	1 cut(s)	74
NsbI	TGCGCA	1 cut(s)	306
NspI	RCATGY	1 cut(s)	313
NspV	TTCGAA	1 cut(s)	271
PciI	ACATGT	1 cut(s)	309
PflFI	GACNNNGTC	1 cut(s)	170
PkrI	GCNGC	1 cut(s)	35
PleI	GAGTC	1 cut(s)	179
PpsI	GAGTC	1 cut(s)	179
PscI	ACATGT	1 cut(s)	309
PsuI	RGATCY	1 cut(s)	106
PsyI	GACNNNGTC	1 cut(s)	170
SalI	GTCGAC	1 cut(s)	164
SaqAI	TTAA	1 cut(s)	42
SatI	GCNGC	1 cut(s)	34
Sau3AI	GATC	1 cut(s)	106
SchI	GAGTC	1 cut(s)	180
SduI	GDGCHC	2 cut(s)	11, 119
SetI	ASST	4 cut(s)	35, 42, 126, 195
SfuI	TTCGAA	1 cut(s)	271
Sse9I	AATT	3 cut(s)	158, 213, 300
SsiI	CCGC	1 cut(s)	104
SspMI	CTAG	2 cut(s)	30, 221
TaqI	TCGA	5 cut(s)	5, 119, 127, 165, 271
TaqII	GACCGA	1 cut(s)	183
TasI	AATT	3 cut(s)	158, 213, 300
Tru1I	TTAA	1 cut(s)	42
Tru9I	TTAA	1 cut(s)	42
TscAI	CASTG	1 cut(s)	265
TseFI	GTSAC	1 cut(s)	74
TseI	GCWGC	1 cut(s)	33
Tsp45I	GTSAC	1 cut(s)	74
TspRI	CASTG	1 cut(s)	265
Tth111I	GACNNNGTC	1 cut(s)	170
XceI	RCATGY	1 cut(s)	313
XmiI	GTMKAC	2 cut(s)	165, 254
XspI	CTAG	2 cut(s)	30, 221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.