Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001729

Physical Location & Seq

Genomic Coordinates Forward (+)

11781285 .. 11793659

Gene Structure 12375 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006910

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3621 bp

ATGACGGAAAGTCAAGGCCGCGACGCCGTTAAAATGCCGAAGCGGAACGACCGCCAGCACCGCCTAATAGCCGTCACCGGAGCCGCCGCTCTCCTCGCTCTCGCCGTCAACCTTGGAATCACCGCCTTCAACTCTCACAGGAACAACAGAAAGAAGAAAGATCTTCAGGGCTCGAAGGTTCGAGTCGCTCTATCGGCGTCGGAGATTTTGAAATTGGCCGACCGAGTCATTTCCAAGTCAAAAGAGGTCCATGACGCTGTGGCTTCACTTCCCCTAGATAAGGTTACGTATATGAATGTTATATCACCTCTAGCTGAATTGGAAGCTCAGCAATTTCCGCTCGTTCAGTCTTGCGTGTTTCCAAAGATGGTGTCTACTAGTAATGATGTTCGAAAAGCAAGCGCTGAGGCCGAGCGGAGAATTGATGCACATGTTCTGACTTGCAGCATGCGTGAGGATGTGTACCGTGTTGTCAAAGCTTTTGCTACGAGAGGAGAGTGGGTGAATGCTGAAGCAAAGCACTACACTCAAGCCTTGATGAGAGACTTTGAACGAAATGGGTTGAATCTTACTTTAACTAAGAGAGAGGAGATGCAGCGTGTGAGAGTCCAAATTGATGAGCTAAGCTTGCGCTATATCCAAAATCTACAAGAGGATTGTTCTTTCCTTGTCTTCACTGAGACTGAGTTGGCTGGGGTACCACAAGATCATCATGTGGCGGCAGTACTAGAACTTTGCGAGGTTGGAACAACAAGGAAGATGGTAGCAGTGGAATATGGAAAGAGGTGCGGAGACGTCAATCTTTCTATCTTAGAAGATTTGGTCCATCTGCGCCATAAGTTTGCTCGGTTACTTGGCTATTCAAATTATGCTGACTATGCTGTTGATCTTAGAATGGCAAAGACGCCCGCAAAGGTTTTTGAGTTCTTAGAGGACATCTCCAATAGTTTGGCTGACTCAGCTACGATGGAGCTTTCTATGTTGAAAGATTTGAAGAAAAAAGAGGAAGGAGACTATCCATTTGGAGTTGAGGATCTACTATACTATGTGAAGAAGGCTGAAGAACAGCAGTTTAATTTTGACTTTGGAGCTCTCAAGCAATACTTTCCGGTAAACTTGGTCCTATCTGGGGTCTTCAAGATAGTCCAAGACCTGTTTGGTTTAAGGTTTGAGGAAATTACAGATGCTGAGGTTTGGCATTCTGATGTTTCGGCGTATTCAGTGTTTGACCTGAGTTCTGGTGAACTGTTGGGTCATTTCTACCTCGATATGTACACAAGGCAAGAAAAATATAGTCATACATGTGTGGTGGCTCTTCAAAATGGTGCTTTATCATCCAATGGATCACGTCAGATCCCAGTTGCATTATTGATATTTCAAGTCCAAAAGGATGTTATCGGTCATCCTGCATTACTGCGATTTTCTGAAGTTGTGAACCTTTTTCACGAGTTTGGCCATGTGGTCCAACATATTTGCAATCGTGCATCATTCTCCAAGTTTTCTGGTCTGGGTTTTGATCCAGACTTTGTGGAGGTTCCTGCTCAGGTGCTAGAGAATTGGTGTTATGAAAGCTTCAGTTTGAAGTTGATATCCGGCTTCCATCAGGATATGACAAAGCCTATCAAAGATGAAATGTGCAGATCCATTAAAAGATGGCGATATTCCTTTTCAGCCCTCAAAATGAAGCAAGAAATTCTTTATTGTCTTTTCGACCAAATCATACATTCTGCTGAAAATGTTGACATAGTTGAGTTATTCAAGCATCTTCATCCAAGGATCATGTTAGGTTTGCCAGCACTGGAGGGTGTCAATCCAGCTTCACGGTTTCCATGTAGTGCCATTGGTTATGAATCTTCTTGTTACAGCCGTATTTGGAGCGAGGTCTTTACTGCGGATATATTTGCCTCAAAGTTTCATGATAGTTATTTGAACCAGTATGCTGGCATGCAGTTCAGGAACAAGGTATTGGCCCCAGGAGGATCAAAAGAACCGATTGAAGTGTTAACAGGCTTTCTTGGGAGAGAACCATCAACTCAAGCTTTTATCGACAGGAAAAGAATCAATCAAATATATTCAAAAAGAAGCAAACTTTCTCAGTCAACAAACTACAACCAACAAAGAACGAGTCTTTTCATCTCTGAGATAAAGTGGGGGTTCTTGAATTCAATTTGGGAAGCTCTTGCTGATTTTTGGAGTTGGAGTGGGTTTTTGGTCATCTGGATATTAAGTAAGGTTTCCCGGAAGTCTTCTAAGCATTCTGAAAGTCGGGATGGAGGCCATACATTGTATTCAAATGCTCCCAACTATTCGAAAAGTGGTGAGCTAGGGACTAGCAAGTCTGGTAATGTGATCTCATCTGTACCAGCTGGTAGTTTTGTTTCAGATGTTGGGAAAAGTAATGGCAACAAGAATGCAAAGGGTGTGAATTTGAAGTTGAATGGCTTTGTGGCGTCTTCCTCTTATGAAGCATTACCTGGATTTAGAGATGTTCCCAATTCTGAGAAGCAGAGCTTATTAGTCCAAAAGCTAAACCTGTGCTGTGTTATATTTGACTTCACGGACCCAACTAAGCACCTGAAAGAAAAGGAGATCAAGCGCCAAACACTGTTGGAAGTAGTGGATTATGTGACTGCAGCAAATGGTAAATTTTCAGAAACTGTAATGCAAGAGGGTATTAACATGGTGTCTGCAAATTTGTTTAGGTCATTCTCTCCGCAGCCACGGGAGAACAAGGTAGTAGATGGCTTTGACTTGGAAGAGGAGGAGCCTTCAATGGATCCTGCTTGGCCTCACTTGCAAATAGTTTACGAGTTCTTGTTAAGATTTGTCGCATCACCTGAAACAGATGCAAAATTAGCTAAAAGATATGTTGATCACTCATTCATTCTTAAGTTGCTTGATCTTTTTGACTCCGAAGATCCTAGAGAGAGGGAGTATTTGAAAACAATTCTGCACAGAACTTATGGAAAATTTATGGTGCATCGCCCATTCATCAGGAAGGCTATCAACAACATCTTTTATAGTTTTATCTTTGAGGCTGAGAAACATAATGGAGTGTCTGAACTTCTAGAAATTTTGGGCAGTATTATAAATGGATTTGCTCTGCCACTGAAAGAAGAACATAAGTTGTTCCTTGTTCGGGCTCTAATTCCCTTGCATAAGCCAAAATATCTAGCAATGTACCATCAACAGCTATCCTATTGCATTACGCAATTTGTAGAAAAAGATTGCAAGCTTGCTGATACTGTCATAAGGGGTTTATTGAAGTACTGGCCGGTCACCAACAGTTCAAAGGAAGTATTGTTTCTTAGCGAGCTGGAGGAGGTTTTAGAAGCAACTCAGCCATCTGAATTCCAGCGCTGCATGGTTCCCTTATTCCGCCAGATTGCTCATTGTTTGAACAGTTCTCACTTTCAGGTGGCAGAGAGGGCTCTGTTTCTGTGGAACAACGATCACATTGAGAACTTGATCAAACAGAATCGTAAGAGCACCTCTGCGCACTGCTTCACGTTAGCCGAAGAGACTGTTGACAATTCAATGACATCAATATTTTTTGGGTTGAAACGGGGTTGGTTCAGGTGGAATACTCATGCTTTGTTAATTGCTATATGTATGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005758 GO:0005829 GO:0005886 GO:0006109 GO:0006111 GO:0006508 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009889 GO:0009987 GO:0010675 GO:0010830 GO:0010906 GO:0016020 GO:0016202 GO:0016787 GO:0019222 GO:0019538 GO:0031323 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0033218 GO:0034641 GO:0042277 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043255 GO:0043603 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0048634 GO:0048641 GO:0050789 GO:0050793 GO:0050794 GO:0051147 GO:0051153 GO:0051239 GO:0062012 GO:0065007 GO:0070011 GO:0070012 GO:0070013 GO:0071704 GO:0071944 GO:0080090 GO:0140096 GO:1901564 GO:1901861 GO:1902809 GO:2000026 GO:2001014

KEGG Pathways

Metabolic & Signaling

ko04614 ko05143 map04614 map05143

Pfam Domains

Protein Families

Peptidase_M3

Protein Analysis

1207

Amino Acids

137.5

Weight (kDa)

7.23

Isoelectric Point (pI)

39.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M3	PF01432	245 - 685	2.1e-99	Peptidase family M3
B56	PF01603	824 - 1169	2.4e-161	Protein phosphatase 2A regulatory B subunit (B56 family)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001729)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67690
fragaria_vesca	FvH4_4g24570 FvH4_4g24570 FvH4_4g24570 FvH4_4g24570
malus_domestica	MD02G1151800.v1.1 MD13G1110200.v1.1 MD16G1110100.v1.1 MD16G1110200.v1.1
prunus_persica	Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1
pyrus_communis	pycom13g09590 pycom16g09360
rosa_chinensis	RchiOBHm_Chr4g0431491 RchiOBHm_Chr4g0431531 RchiOBHm_Chr4g0444651
rosa_laevigata	RLG00000006910 RLG00000018869 RLG00000036429
rosa_multiflora	Rmu_sc0000543.1_g000041 Rmu_sc0001207.1_g000024
rosa_roxburghii	Rroxscaffold_5G00372940 Rroxscaffold_5G00372960 Rroxscaffold_5G00372990 Rroxscaffold_5G00373020
rosa_rugosa	Rorug04G0250600 Rorug04G0250700
rosa_samantha	Rh2AG013000 Rh2AG278200 Rh4AG306800 Rh4AG307200 Rh4AG307400 Rh4BG314800 Rh4BG315100 Rh4CG330200 Rh4DG310000 Rh4DG310100 Rh4DG421900 Rh5AG518200 Rh5DG435400 Rh6CG219500
rosa_wichuraiana	Rw4G026630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	3089
AasI	GACNNNNNNGTC	1 cut(s)	2335
AatII	GACGTC	1 cut(s)	798
Acc16I	TGCGCA	1 cut(s)	3498
Acc65I	GGTACC	1 cut(s)	697
AccB1I	GGYRCC	1 cut(s)	697
AccBSI	CCGCTC	3 cut(s)	89, 340, 415
AccI	GTMKAC	1 cut(s)	374
AccII	CGCG	1 cut(s)	21
AcoI	YGGCCR	3 cut(s)	216, 1453, 3272
AcsI	RAATTY	8 cut(s)	1692, 2161, 2425, 2645, 2692, 2969, 3072, 3350
AcuI	CTGAAG	5 cut(s)	149, 531, 1080, 1446, 1558
AcyI	GRCGYC	5 cut(s)	24, 197, 795, 905, 2450
AfaI	GTAC	7 cut(s)	464, 699, 726, 1274, 2361, 3182, 3269
AfeI	AGCGCT	2 cut(s)	403, 3359
AfiI	CCNNNNNNNGG	3 cut(s)	280, 1129, 3139
AflII	CTTAAG	1 cut(s)	2888
AflIII	ACRYGT	2 cut(s)	430, 1301
AhdI	GACNNNNNGTC	1 cut(s)	9
AhlI	ACTAGT	1 cut(s)	377
AjiI	CACGTC	1 cut(s)	1349
AjnI	CCWGG	2 cut(s)	1972, 2473
AjuI	GAANNNNNNNTTGG	2 cut(s)	1949, 1981
Alw21I	GWGCWC	2 cut(s)	1093, 3491
Alw26I	GTCTC	5 cut(s)	537, 674, 786, 1005, 3515
AlwNI	CAGNNNCTG	2 cut(s)	1187, 2657
Aor51HI	AGCGCT	2 cut(s)	403, 3359
AoxI	GGCC	8 cut(s)	16, 216, 408, 1453, 1968, 2275, 2786, 3272
ApeKI	GCWGC	5 cut(s)	444, 595, 2633, 2716, 3360
ApoI	RAATTY	8 cut(s)	1692, 2161, 2425, 2645, 2692, 2969, 3072, 3350
ArsI	GACNNNNNNTTYG	6 cut(s)	356, 388, 1004, 1036, 2110, 2142
Asp718I	GGTACC	1 cut(s)	697
AspLEI	GCGC	6 cut(s)	404, 633, 834, 2598, 3360, 3499
AspS9I	GGNCC	6 cut(s)	247, 823, 1120, 1462, 1969, 2560
AsuC2I	CCSGG	1 cut(s)	2239
AsuHPI	GGTGA	8 cut(s)	67, 112, 297, 514, 1253, 2330, 2826, 3271
AsuII	TTCGAA	2 cut(s)	391, 2309
AvaII	GGWCC	5 cut(s)	247, 823, 1120, 1462, 2560
BalI	TGGCCA	1 cut(s)	1455
BamHI	GGATCC	1 cut(s)	2776
BanI	GGYRCC	1 cut(s)	697
BanII	GRGCYC	4 cut(s)	173, 1093, 3145, 3433
BauI	CACGAG	1 cut(s)	1445
BbsI	GAAGAC	4 cut(s)	664, 1126, 2238, 2445
Bbv12I	GWGCWC	2 cut(s)	1093, 3491
BbvCI	CCTCAGC	2 cut(s)	405, 1188
BbvI	GCAGC	5 cut(s)	456, 607, 2645, 2728, 3347
BceAI	ACGGC	4 cut(s)	11, 56, 89, 1851
BciT130I	CCWGG	2 cut(s)	1974, 2475
BclI	TGATCA	2 cut(s)	2872, 3468
BcnI	CCSGG	1 cut(s)	2239
BcoDI	GTCTC	5 cut(s)	537, 674, 786, 1005, 3515
BcuI	ACTAGT	1 cut(s)	377
BfmI	CTRYAG	1 cut(s)	2631
BfoI	RGCGCY	3 cut(s)	405, 2599, 3361
BfrI	CTTAAG	1 cut(s)	2888
BglII	AGATCT	1 cut(s)	160
BisI	GCNGC	9 cut(s)	19, 84, 87, 445, 596, 720, 2634, 2717, 3361
BlpI	GCTNAGC	2 cut(s)	327, 623
BlsI	GCNGC	9 cut(s)	20, 85, 88, 446, 597, 721, 2635, 2718, 3362
BmcAI	AGTACT	2 cut(s)	726, 3269
Bme1390I	CCNGG	3 cut(s)	1974, 2239, 2475
Bme18I	GGWCC	5 cut(s)	247, 823, 1120, 1462, 2560
BmeRI	GACNNNNNGTC	1 cut(s)	9
BmgBI	CACGTC	1 cut(s)	1349
BmgT120I	GGNCC	6 cut(s)	247, 823, 1120, 1462, 1969, 2560
BmiI	GGNNCC	8 cut(s)	82, 699, 1536, 1971, 2562, 2766, 2778, 3369
BmrFI	CCNGG	3 cut(s)	1974, 2239, 2475
BmrI	ACTGGG	1 cut(s)	1352
BmsI	GCATC	8 cut(s)	415, 582, 1174, 1493, 1771, 2836, 2840, 2989
BmuI	ACTGGG	1 cut(s)	1352
BpiI	GAAGAC	4 cut(s)	664, 1126, 2238, 2445
BplI	GAGNNNNNCTC	2 cut(s)	923, 955
BpmI	CTGGAG	2 cut(s)	1820, 3338
Bpu10I	CCTNAGC	3 cut(s)	405, 1188, 1542
Bpu1102I	GCTNAGC	2 cut(s)	327, 623
Bpu14I	TTCGAA	2 cut(s)	391, 2309
BpuEI	CTTGAG	3 cut(s)	513, 1079, 2019
BpuMI	CCSGG	1 cut(s)	2239
BsaAI	YACGTR	1 cut(s)	288
BsaHI	GRCGYC	5 cut(s)	24, 197, 795, 905, 2450
BsaJI	CCNNGG	4 cut(s)	112, 1772, 1972, 2720
BsaWI	WCCGGW	2 cut(s)	77, 1108
BsaXI	ACNNNNNCTCC	4 cut(s)	486, 516, 2185, 2215
Bsc4I	CCNNNNNNNGG	3 cut(s)	280, 1129, 3139
Bse118I	RCCGGY	1 cut(s)	3274
Bse1I	ACTGG	4 cut(s)	1358, 1803, 1933, 3275
Bse3DI	GCAATG	1 cut(s)	3183
BseBI	CCWGG	2 cut(s)	1974, 2475
BseDI	CCNNGG	4 cut(s)	112, 1772, 1972, 2720
BseGI	GGATG	6 cut(s)	463, 1334, 1396, 1402, 1768, 2275
BseLI	CCNNNNNNNGG	3 cut(s)	280, 1129, 3139
BseMI	GCAATG	1 cut(s)	3183
BseNI	ACTGG	4 cut(s)	1358, 1803, 1933, 3275
BseRI	GAGGAG	6 cut(s)	83, 507, 602, 2774, 2777, 3335
BseXI	GCAGC	5 cut(s)	456, 607, 2645, 2728, 3347
BseYI	CCCAGC	1 cut(s)	692
BsgI	GTGCAG	2 cut(s)	1657, 2936
Bsh1236I	CGCG	1 cut(s)	21
Bsh1285I	CGRYCG	2 cut(s)	52, 223
BshFI	GGCC	8 cut(s)	18, 218, 410, 1455, 1970, 2277, 2788, 3274
BshNI	GGYRCC	1 cut(s)	697
BsiEI	CGRYCG	2 cut(s)	52, 223
BsiHKAI	GWGCWC	2 cut(s)	1093, 3491
BsiSI	CCGG	5 cut(s)	78, 1109, 1593, 2239, 3275
BslFI	GGGAC	1 cut(s)	2341
BslI	CCNNNNNNNGG	3 cut(s)	280, 1129, 3139
BsmAI	GTCTC	5 cut(s)	537, 674, 786, 1005, 3515
BsmBI	CGTCTC	1 cut(s)	786
BsmFI	GGGAC	1 cut(s)	2341
BsmI	GAATGC	4 cut(s)	511, 1198, 2254, 2416
BsnI	GGCC	8 cut(s)	18, 218, 410, 1455, 1970, 2277, 2788, 3274
Bsp119I	TTCGAA	2 cut(s)	391, 2309
Bsp1286I	GDGCHC	5 cut(s)	173, 1093, 3145, 3433, 3491
Bsp1407I	TGTACA	1 cut(s)	1272
Bsp1720I	GCTNAGC	2 cut(s)	327, 623
BspANI	GGCC	8 cut(s)	18, 218, 410, 1455, 1970, 2277, 2788, 3274
BspFNI	CGCG	1 cut(s)	21
BspHI	TCATGA	1 cut(s)	1915
BspLI	GGNNCC	8 cut(s)	82, 699, 1536, 1971, 2562, 2766, 2778, 3369
BspMAI	CTGCAG	1 cut(s)	2635
BspQI	GCTCTTC	1 cut(s)	1320
BspT104I	TTCGAA	2 cut(s)	391, 2309
BspT107I	GGYRCC	1 cut(s)	697
BspTI	CTTAAG	1 cut(s)	2888
BsrBI	CCGCTC	3 cut(s)	89, 340, 415
BsrDI	GCAATG	1 cut(s)	3183
BsrFI	RCCGGY	1 cut(s)	3274
BsrGI	TGTACA	1 cut(s)	1272
BsrI	ACTGG	4 cut(s)	1358, 1803, 1933, 3275
BssAI	RCCGGY	1 cut(s)	3274
BssECI	CCNNGG	4 cut(s)	112, 1772, 1972, 2720
BssNI	GRCGYC	5 cut(s)	24, 197, 795, 905, 2450
BssSI	CACGAG	1 cut(s)	1445
BssT1I	CCWWGG	2 cut(s)	112, 1772
Bst2BI	CACGAG	1 cut(s)	1445
Bst2UI	CCWGG	2 cut(s)	1974, 2475
Bst4CI	ACNGT	9 cut(s)	467, 1248, 1824, 2607, 2659, 3247, 3287, 3404, 3526
Bst6I	CTCTTC	3 cut(s)	1320, 2751, 3513
BstACI	GRCGYC	5 cut(s)	24, 197, 795, 905, 2450
BstAFI	CTTAAG	1 cut(s)	2888
BstAUI	TGTACA	1 cut(s)	1272
BstBAI	YACGTR	1 cut(s)	288
BstBI	TTCGAA	2 cut(s)	391, 2309
BstDSI	CCRYGG	1 cut(s)	2720
BstEII	GGTNACC	1 cut(s)	3277
BstENI	CCTNNNNNAGG	1 cut(s)	278
BstF5I	GGATG	6 cut(s)	463, 1334, 1396, 1402, 1768, 2275
BstFNI	CGCG	1 cut(s)	21
BstH2I	RGCGCY	3 cut(s)	405, 2599, 3361
BstHHI	GCGC	6 cut(s)	404, 633, 834, 2598, 3360, 3499
BstMAI	GTCTC	5 cut(s)	537, 674, 786, 1005, 3515
BstMCI	CGRYCG	2 cut(s)	52, 223
BstNI	CCWGG	2 cut(s)	1974, 2475
BstNSI	RCATGY	4 cut(s)	434, 451, 1305, 1948
BstPI	GGTNACC	1 cut(s)	3277
BstSCI	CCNGG	3 cut(s)	1972, 2237, 2473
BstSFI	CTRYAG	1 cut(s)	2631
BstSNI	TACGTA	1 cut(s)	288
BstUI	CGCG	1 cut(s)	21
BstV1I	GCAGC	5 cut(s)	456, 607, 2645, 2728, 3347
BstV2I	GAAGAC	4 cut(s)	664, 1126, 2238, 2445
BstX2I	RGATCY	6 cut(s)	160, 1033, 1353, 1640, 2776, 2917
BstXI	CCANNNNNNTGG	2 cut(s)	949, 1940
BstYI	RGATCY	6 cut(s)	160, 1033, 1353, 1640, 2776, 2917
BsuRI	GGCC	8 cut(s)	18, 218, 410, 1455, 1970, 2277, 2788, 3274
BtgI	CCRYGG	1 cut(s)	2720
BtgZI	GCGATG	1 cut(s)	2966
BtrI	CACGTC	1 cut(s)	1349
BtsCI	GGATG	6 cut(s)	463, 1334, 1396, 1402, 1768, 2275
BtsI	GCAGTG	2 cut(s)	774, 3499
BtsIMutI	CAGTG	7 cut(s)	675, 774, 1227, 1796, 2603, 3107, 3499
CaiI	CAGNNNCTG	2 cut(s)	1187, 2657
CciI	TCATGA	1 cut(s)	1915
CfoI	GCGC	6 cut(s)	404, 633, 834, 2598, 3360, 3499
Cfr10I	RCCGGY	1 cut(s)	3274
Cfr13I	GGNCC	6 cut(s)	247, 823, 1120, 1462, 1969, 2560
CseI	GACGC	5 cut(s)	32, 186, 263, 913, 2439
Csp6I	GTAC	7 cut(s)	463, 698, 725, 1273, 2360, 3181, 3268
CviQI	GTAC	7 cut(s)	463, 698, 725, 1273, 2360, 3181, 3268
DrdI	GACNNNNNNGTC	1 cut(s)	2335
DriI	GACNNNNNGTC	1 cut(s)	9
DseDI	GACNNNNNNGTC	1 cut(s)	2335
EaeI	YGGCCR	3 cut(s)	216, 1453, 3272
Eam1104I	CTCTTC	3 cut(s)	1320, 2751, 3513
Eam1105I	GACNNNNNGTC	1 cut(s)	9
EarI	CTCTTC	3 cut(s)	1320, 2751, 3513
EciI	GGCGGA	1 cut(s)	3368
Ecl136II	GAGCTC	1 cut(s)	1091
Eco105I	TACGTA	1 cut(s)	288
Eco130I	CCWWGG	2 cut(s)	112, 1772
Eco24I	GRGCYC	4 cut(s)	173, 1093, 3145, 3433
Eco32I	GATATC	1 cut(s)	1590
Eco47I	GGWCC	5 cut(s)	247, 823, 1120, 1462, 2560
Eco47III	AGCGCT	2 cut(s)	403, 3359
Eco53kI	GAGCTC	1 cut(s)	1091
Eco57I	CTGAAG	5 cut(s)	149, 531, 1080, 1446, 1558
Eco91I	GGTNACC	1 cut(s)	3277
EcoICRI	GAGCTC	1 cut(s)	1091
EcoNI	CCTNNNNNAGG	1 cut(s)	278
EcoO65I	GGTNACC	1 cut(s)	3277
EcoRI	GAATTC	2 cut(s)	2161, 3350
EcoRII	CCWGG	2 cut(s)	1972, 2473
EcoRV	GATATC	1 cut(s)	1590
EcoT14I	CCWWGG	2 cut(s)	112, 1772
EcoT38I	GRGCYC	4 cut(s)	173, 1093, 3145, 3433
ErhI	CCWWGG	2 cut(s)	112, 1772
Esp3I	CGTCTC	1 cut(s)	786
FalI	AAGNNNNNCTT	6 cut(s)	1088, 1120, 1680, 1712, 2495, 2527
FaqI	GGGAC	1 cut(s)	2341
FauI	CCCGC	1 cut(s)	916
FbaI	TGATCA	2 cut(s)	2872, 3468
FblI	GTMKAC	1 cut(s)	374
Fnu4HI	GCNGC	9 cut(s)	19, 84, 87, 445, 596, 720, 2634, 2717, 3361
FokI	GGATG	6 cut(s)	470, 1321, 1389, 1403, 1755, 2282
FriOI	GRGCYC	4 cut(s)	173, 1093, 3145, 3433
Fsp4HI	GCNGC	9 cut(s)	19, 84, 87, 445, 596, 720, 2634, 2717, 3361
FspI	TGCGCA	1 cut(s)	3498
GlaI	GCGC	6 cut(s)	403, 632, 833, 2597, 3359, 3498
GluI	GCNGC	9 cut(s)	19, 84, 87, 445, 596, 720, 2634, 2717, 3361
GsaI	CCCAGC	1 cut(s)	696
GsuI	CTGGAG	2 cut(s)	1820, 3338
HaeII	RGCGCY	3 cut(s)	405, 2599, 3361
HaeIII	GGCC	8 cut(s)	18, 218, 410, 1455, 1970, 2277, 2788, 3274
HapII	CCGG	5 cut(s)	78, 1109, 1593, 2239, 3275
HgaI	GACGC	5 cut(s)	32, 186, 263, 913, 2439
HhaI	GCGC	6 cut(s)	404, 633, 834, 2598, 3360, 3499
Hin1I	GRCGYC	5 cut(s)	24, 197, 795, 905, 2450
Hin6I	GCGC	6 cut(s)	402, 631, 832, 2596, 3358, 3497
HinP1I	GCGC	6 cut(s)	402, 631, 832, 2596, 3358, 3497
HincII	GTYRAC	5 cut(s)	109, 1741, 2004, 2100, 3529
HindII	GTYRAC	5 cut(s)	109, 1741, 2004, 2100, 3529
HindIII	AAGCTT	5 cut(s)	477, 625, 1570, 2037, 3233
HpaI	GTTAAC	1 cut(s)	2004
HpaII	CCGG	5 cut(s)	78, 1109, 1593, 2239, 3275
HphI	GGTGA	8 cut(s)	67, 112, 297, 514, 1253, 2330, 2826, 3271
Hpy99I	CGWCG	2 cut(s)	26, 202
HpyAV	CCTTC	6 cut(s)	136, 169, 1001, 1048, 2778, 2992
HpyCH4III	ACNGT	9 cut(s)	467, 1248, 1824, 2607, 2659, 3247, 3287, 3404, 3526
HpyCH4IV	ACGT	4 cut(s)	287, 795, 1348, 3509
HpySE526I	ACGT	4 cut(s)	287, 795, 1348, 3509
Hsp92I	GRCGYC	5 cut(s)	24, 197, 795, 905, 2450
HspAI	GCGC	6 cut(s)	402, 631, 832, 2596, 3358, 3497
KpnI	GGTACC	1 cut(s)	701
Ksp22I	TGATCA	2 cut(s)	2872, 3468
KspAI	GTTAAC	1 cut(s)	2004
LguI	GCTCTTC	1 cut(s)	1320
LmnI	GCTCC	6 cut(s)	80, 970, 1088, 1875, 2302, 2764
Lsp1109I	GCAGC	5 cut(s)	456, 607, 2645, 2728, 3347
LweI	GCATC	8 cut(s)	415, 582, 1174, 1493, 1771, 2836, 2840, 2989
MaeII	ACGT	4 cut(s)	287, 795, 1348, 3509
MaeIII	GTNAC	6 cut(s)	73, 283, 849, 1859, 2626, 3277
MbiI	CCGCTC	3 cut(s)	89, 340, 415
MflI	RGATCY	6 cut(s)	160, 1033, 1353, 1640, 2776, 2917
MhlI	GDGCHC	5 cut(s)	173, 1093, 3145, 3433, 3491
MlsI	TGGCCA	1 cut(s)	1455
MluNI	TGGCCA	1 cut(s)	1455
MlyI	GAGTC	6 cut(s)	192, 234, 615, 950, 2134, 2903
MmeI	TCCRAC	5 cut(s)	180, 724, 1489, 2177, 2589
Mox20I	TGGCCA	1 cut(s)	1455
MscI	TGGCCA	1 cut(s)	1455
MslI	CAYNNNNRTG	2 cut(s)	1203, 1302
Msp20I	TGGCCA	1 cut(s)	1455
MspA1I	CMGCKG	1 cut(s)	2366
MspCI	CTTAAG	1 cut(s)	2888
MspI	CCGG	5 cut(s)	78, 1109, 1593, 2239, 3275
MspR9I	CCNGG	3 cut(s)	1974, 2239, 2475
Mva1269I	GAATGC	4 cut(s)	511, 1198, 2254, 2416
MvaI	CCWGG	2 cut(s)	1974, 2475
MvnI	CGCG	1 cut(s)	21
NciI	CCSGG	1 cut(s)	2239
NlaIV	GGNNCC	8 cut(s)	82, 699, 1536, 1971, 2562, 2766, 2778, 3369
NmeAIII	GCCGAG	1 cut(s)	436
NmuCI	GTSAC	3 cut(s)	73, 2626, 3277
NsbI	TGCGCA	1 cut(s)	3498
NspI	RCATGY	4 cut(s)	434, 451, 1305, 1948
NspV	TTCGAA	2 cut(s)	391, 2309
PaeI	GCATGC	2 cut(s)	451, 1948
PagI	TCATGA	1 cut(s)	1915
PciI	ACATGT	2 cut(s)	430, 1301
PciSI	GCTCTTC	1 cut(s)	1320
PcsI	WCGNNNNNNNCGW	1 cut(s)	102
PctI	GAATGC	4 cut(s)	511, 1198, 2254, 2416
PfeI	GAWTC	5 cut(s)	117, 565, 1850, 2058, 3478
PflFI	GACNNNGTC	1 cut(s)	224
PfoI	TCCNGGA	1 cut(s)	2237
PkrI	GCNGC	9 cut(s)	20, 85, 88, 446, 597, 721, 2635, 2718, 3362
PleI	GAGTC	6 cut(s)	191, 233, 614, 950, 2133, 2903
PpsI	GAGTC	6 cut(s)	191, 233, 614, 950, 2133, 2903
Ppu21I	YACGTR	1 cut(s)	288
PscI	ACATGT	2 cut(s)	430, 1301
PsiI	TTATAA	1 cut(s)	3089
Psp124BI	GAGCTC	1 cut(s)	1093
Psp6I	CCWGG	2 cut(s)	1972, 2473
PspEI	GGTNACC	1 cut(s)	3277
PspFI	CCCAGC	1 cut(s)	692
PspGI	CCWGG	2 cut(s)	1972, 2473
PspN4I	GGNNCC	8 cut(s)	82, 699, 1536, 1971, 2562, 2766, 2778, 3369
PspPI	GGNCC	6 cut(s)	247, 823, 1120, 1462, 1969, 2560
PstI	CTGCAG	1 cut(s)	2635
PstNI	CAGNNNCTG	2 cut(s)	1187, 2657
PsuI	RGATCY	6 cut(s)	160, 1033, 1353, 1640, 2776, 2917
PsyI	GACNNNGTC	1 cut(s)	224
PvuII	CAGCTG	1 cut(s)	2366
RsaI	GTAC	7 cut(s)	464, 699, 726, 1274, 2361, 3182, 3269
RsaNI	GTAC	7 cut(s)	463, 698, 725, 1273, 2360, 3181, 3268
RseI	CAYNNNNRTG	2 cut(s)	1203, 1302
SacI	GAGCTC	1 cut(s)	1093
SapI	GCTCTTC	1 cut(s)	1320
SatI	GCNGC	9 cut(s)	19, 84, 87, 445, 596, 720, 2634, 2717, 3361
Sau96I	GGNCC	6 cut(s)	247, 823, 1120, 1462, 1969, 2560
ScaI	AGTACT	2 cut(s)	726, 3269
SchI	GAGTC	6 cut(s)	192, 234, 615, 950, 2134, 2903
ScrFI	CCNGG	3 cut(s)	1974, 2239, 2475
SduI	GDGCHC	5 cut(s)	173, 1093, 3145, 3433, 3491
SfaNI	GCATC	8 cut(s)	415, 582, 1174, 1493, 1771, 2836, 2840, 2989
SfcI	CTRYAG	1 cut(s)	2631
SfuI	TTCGAA	2 cut(s)	391, 2309
SinI	GGWCC	5 cut(s)	247, 823, 1120, 1462, 2560
SmiMI	CAYNNNNRTG	2 cut(s)	1203, 1302
SmlI	CTYRAG	4 cut(s)	528, 1094, 2034, 2888
SmoI	CTYRAG	4 cut(s)	528, 1094, 2034, 2888
SnaBI	TACGTA	1 cut(s)	288
SpeI	ACTAGT	1 cut(s)	377
SphI	GCATGC	2 cut(s)	451, 1948
SspI	AATATT	1 cut(s)	3549
SstI	GAGCTC	1 cut(s)	1093
StyD4I	CCNGG	3 cut(s)	1972, 2237, 2473
StyI	CCWWGG	2 cut(s)	112, 1772
TaaI	ACNGT	9 cut(s)	467, 1248, 1824, 2607, 2659, 3247, 3287, 3404, 3526
TaiI	ACGT	4 cut(s)	290, 798, 1351, 3512
TaqI	TCGA	7 cut(s)	173, 181, 391, 1266, 1710, 2046, 2309
TaqII	GACCGA	2 cut(s)	237, 1388
TatI	WGTACW	3 cut(s)	724, 1272, 3267
TauI	GCSGC	4 cut(s)	21, 86, 89, 722
TfiI	GAWTC	5 cut(s)	117, 565, 1850, 2058, 3478
TscAI	CASTG	7 cut(s)	682, 774, 1227, 1803, 2610, 3114, 3506
TseFI	GTSAC	3 cut(s)	73, 2626, 3277
TseI	GCWGC	5 cut(s)	444, 595, 2633, 2716, 3360
Tsp45I	GTSAC	3 cut(s)	73, 2626, 3277
TspGWI	ACGGA	2 cut(s)	20, 2573
TspRI	CASTG	7 cut(s)	682, 774, 1227, 1803, 2610, 3114, 3506
Tth111I	GACNNNGTC	1 cut(s)	224
Vha464I	CTTAAG	1 cut(s)	2888
VpaK11BI	GGWCC	5 cut(s)	247, 823, 1120, 1462, 2560
XagI	CCTNNNNNAGG	1 cut(s)	278
XapI	RAATTY	8 cut(s)	1692, 2161, 2425, 2645, 2692, 2969, 3072, 3350
XbaI	TCTAGA	1 cut(s)	3067
XceI	RCATGY	4 cut(s)	434, 451, 1305, 1948
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1154
XmiI	GTMKAC	1 cut(s)	374
ZraI	GACGTC	1 cut(s)	796
ZrmI	AGTACT	2 cut(s)	726, 3269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.