Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001729

Physical Location & Seq

Genomic Coordinates Reverse (-)

54224798 .. 54225612

Gene Structure 815 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00372940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGACGGAAAGTCAAGGCGGCGACGCCGTCAAAATGCCGAAGCGGAACCACCGCCACCACCGCCTAATAGCCGTCACCGGAGCCGCCGCTCTCCTCGCTCTCGCCGTCAACCTTGGAATCACCGCCTTCAACTCTCACAGGAACAACAGAAAGAAGAAAGATCTTCAGGGCTCGAAGGTTCGAGTTACTCTATCGGCTTCGGAGATTTTGAAATTGGCCGACCGAGTCATTTCCAAGTCAAAAGAGGTCCACGACGCTGTGGCTTCGGTTCCGCTTGATAAGGTTACGTATATGAATGTTATTTCACCTCTAGCTGAATTGGAAGCGCAGCAATTTCCACTTGTACAGTCATGTTTGTTTCCAAAGATGGTGTCTACTAGTGATGATGTTCGAAAAGCAAGCGCCGAGGCCGAGCGGAGAATTGATGCACATGTTCTCACCTGCAGGTATTGTTGTTTTTTTCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005758 GO:0005829 GO:0005886 GO:0006109 GO:0006111 GO:0006508 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009889 GO:0009987 GO:0010675 GO:0010830 GO:0010906 GO:0016020 GO:0016202 GO:0016787 GO:0019222 GO:0019538 GO:0031323 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0033218 GO:0034641 GO:0042277 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043255 GO:0043603 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0048634 GO:0048641 GO:0050789 GO:0050793 GO:0050794 GO:0051147 GO:0051153 GO:0051239 GO:0062012 GO:0065007 GO:0070011 GO:0070012 GO:0070013 GO:0071704 GO:0071944 GO:0080090 GO:0140096 GO:1901564 GO:1901861 GO:1902809 GO:2000026 GO:2001014

KEGG Pathways

Metabolic & Signaling

ko04614 ko05143 map04614 map05143

Pfam Domains

Protein Families

Peptidase_M3

Protein Analysis

155

Amino Acids

17.16

Weight (kDa)

9.69

Isoelectric Point (pI)

43.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001729)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67690
fragaria_vesca	FvH4_4g24570 FvH4_4g24570 FvH4_4g24570 FvH4_4g24570
malus_domestica	MD02G1151800.v1.1 MD13G1110200.v1.1 MD16G1110100.v1.1 MD16G1110200.v1.1
prunus_persica	Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1
pyrus_communis	pycom13g09590 pycom16g09360
rosa_chinensis	RchiOBHm_Chr4g0431491 RchiOBHm_Chr4g0431531 RchiOBHm_Chr4g0444651
rosa_laevigata	RLG00000006910 RLG00000018869 RLG00000036429
rosa_multiflora	Rmu_sc0000543.1_g000041 Rmu_sc0001207.1_g000024
rosa_roxburghii	Rroxscaffold_5G00372940 Rroxscaffold_5G00372960 Rroxscaffold_5G00372990 Rroxscaffold_5G00373020
rosa_rugosa	Rorug04G0250600 Rorug04G0250700
rosa_samantha	Rh2AG013000 Rh2AG278200 Rh4AG306800 Rh4AG307200 Rh4AG307400 Rh4BG314800 Rh4BG315100 Rh4CG330200 Rh4DG310000 Rh4DG310100 Rh4DG421900 Rh5AG518200 Rh5DG435400 Rh6CG219500
rosa_wichuraiana	Rw4G026630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	449
Acc36I	ACCTGC	2 cut(s)	435, 449
AccBSI	CCGCTC	2 cut(s)	89, 415
AccI	GTMKAC	1 cut(s)	374
AciI	CCGC	9 cut(s)	18, 43, 52, 61, 84, 87, 123, 272, 415
AcoI	YGGCCR	1 cut(s)	216
AcuI	CTGAAG	1 cut(s)	149
AcyI	GRCGYC	1 cut(s)	24
AfaI	GTAC	1 cut(s)	345
AflIII	ACRYGT	1 cut(s)	430
AgsI	TTSAA	2 cut(s)	130, 211
AhdI	GACNNNNNGTC	1 cut(s)	9
AhlI	ACTAGT	1 cut(s)	377
AluBI	AGCT	1 cut(s)	314
AluI	AGCT	1 cut(s)	314
AoxI	GGCC	2 cut(s)	216, 408
ApeKI	GCWGC	1 cut(s)	328
ArsI	GACNNNNNNTTYG	2 cut(s)	356, 388
AspLEI	GCGC	2 cut(s)	328, 404
AspS9I	GGNCC	1 cut(s)	247
AsuHPI	GGTGA	4 cut(s)	67, 112, 297, 430
AsuII	TTCGAA	1 cut(s)	391
AvaII	GGWCC	1 cut(s)	247
BanII	GRGCYC	1 cut(s)	173
BbvI	GCAGC	1 cut(s)	340
BccI	CCATC	1 cut(s)	361
BceAI	ACGGC	3 cut(s)	11, 56, 89
BcuI	ACTAGT	1 cut(s)	377
BfaI	CTAG	2 cut(s)	311, 378
BfmI	CTRYAG	1 cut(s)	442
BfoI	RGCGCY	1 cut(s)	405
BfuAI	ACCTGC	2 cut(s)	435, 449
BglII	AGATCT	1 cut(s)	160
BisI	GCNGC	4 cut(s)	19, 84, 87, 329
BlsI	GCNGC	4 cut(s)	20, 85, 88, 330
Bme18I	GGWCC	1 cut(s)	247
BmeRI	GACNNNNNGTC	1 cut(s)	9
BmgT120I	GGNCC	1 cut(s)	247
BmiI	GGNNCC	3 cut(s)	47, 82, 270
BmsI	GCATC	1 cut(s)	415
Bpu14I	TTCGAA	1 cut(s)	391
BsaAI	YACGTR	1 cut(s)	288
BsaHI	GRCGYC	1 cut(s)	24
BsaJI	CCNNGG	2 cut(s)	112, 405
BsaWI	WCCGGW	1 cut(s)	77
BseDI	CCNNGG	2 cut(s)	112, 405
BseRI	GAGGAG	1 cut(s)	83
BseXI	GCAGC	1 cut(s)	340
Bsh1285I	CGRYCG	1 cut(s)	223
BshFI	GGCC	2 cut(s)	218, 410
BsiEI	CGRYCG	1 cut(s)	223
BsiSI	CCGG	1 cut(s)	78
BsnI	GGCC	2 cut(s)	218, 410
Bsp119I	TTCGAA	1 cut(s)	391
Bsp1286I	GDGCHC	1 cut(s)	173
Bsp1407I	TGTACA	1 cut(s)	343
Bsp143I	GATC	1 cut(s)	160
BspACI	CCGC	9 cut(s)	18, 43, 52, 61, 84, 87, 123, 272, 415
BspANI	GGCC	2 cut(s)	218, 410
BspLI	GGNNCC	3 cut(s)	47, 82, 270
BspMAI	CTGCAG	1 cut(s)	446
BspMI	ACCTGC	2 cut(s)	435, 449
BspT104I	TTCGAA	1 cut(s)	391
BsrBI	CCGCTC	2 cut(s)	89, 415
BsrGI	TGTACA	1 cut(s)	343
BssECI	CCNNGG	2 cut(s)	112, 405
BssMI	GATC	1 cut(s)	160
BssNI	GRCGYC	1 cut(s)	24
BssT1I	CCWWGG	1 cut(s)	112
Bst4CI	ACNGT	1 cut(s)	348
BstACI	GRCGYC	1 cut(s)	24
BstAUI	TGTACA	1 cut(s)	343
BstBAI	YACGTR	1 cut(s)	288
BstBI	TTCGAA	1 cut(s)	391
BstC8I	GCNNGC	1 cut(s)	400
BstH2I	RGCGCY	1 cut(s)	405
BstHHI	GCGC	2 cut(s)	328, 404
BstKTI	GATC	1 cut(s)	163
BstMBI	GATC	1 cut(s)	160
BstMCI	CGRYCG	1 cut(s)	223
BstMWI	GCNNNNNNNGC	2 cut(s)	60, 95
BstNSI	RCATGY	1 cut(s)	434
BstSFI	CTRYAG	1 cut(s)	442
BstSNI	TACGTA	1 cut(s)	288
BstV1I	GCAGC	1 cut(s)	340
BstX2I	RGATCY	1 cut(s)	160
BstYI	RGATCY	1 cut(s)	160
BsuRI	GGCC	2 cut(s)	218, 410
BveI	ACCTGC	2 cut(s)	435, 449
Cac8I	GCNNGC	1 cut(s)	400
CfoI	GCGC	2 cut(s)	328, 404
Cfr13I	GGNCC	1 cut(s)	247
CseI	GACGC	2 cut(s)	32, 263
Csp6I	GTAC	1 cut(s)	344
CviAII	CATG	2 cut(s)	351, 431
CviJI	RGCY	8 cut(s)	71, 83, 171, 197, 218, 263, 314, 410
CviKI_1	RGCY	8 cut(s)	71, 83, 171, 197, 218, 263, 314, 410
CviQI	GTAC	1 cut(s)	344
DpnI	GATC	1 cut(s)	162
DpnII	GATC	1 cut(s)	160
DriI	GACNNNNNGTC	1 cut(s)	9
EaeI	YGGCCR	1 cut(s)	216
Eam1105I	GACNNNNNGTC	1 cut(s)	9
Eco105I	TACGTA	1 cut(s)	288
Eco130I	CCWWGG	1 cut(s)	112
Eco24I	GRGCYC	1 cut(s)	173
Eco47I	GGWCC	1 cut(s)	247
Eco57I	CTGAAG	1 cut(s)	149
EcoT14I	CCWWGG	1 cut(s)	112
EcoT38I	GRGCYC	1 cut(s)	173
ErhI	CCWWGG	1 cut(s)	112
FaeI	CATG	2 cut(s)	354, 434
FaiI	YATR	4 cut(s)	291, 293, 352, 432
FatI	CATG	2 cut(s)	350, 430
FblI	GTMKAC	1 cut(s)	374
Fnu4HI	GCNGC	4 cut(s)	19, 84, 87, 329
FriOI	GRGCYC	1 cut(s)	173
Fsp4HI	GCNGC	4 cut(s)	19, 84, 87, 329
FspBI	CTAG	2 cut(s)	311, 378
GlaI	GCGC	2 cut(s)	327, 403
GluI	GCNGC	4 cut(s)	19, 84, 87, 329
HaeII	RGCGCY	1 cut(s)	405
HaeIII	GGCC	2 cut(s)	218, 410
HapII	CCGG	1 cut(s)	78
HgaI	GACGC	2 cut(s)	32, 263
HhaI	GCGC	2 cut(s)	328, 404
Hin1I	GRCGYC	1 cut(s)	24
Hin1II	CATG	2 cut(s)	354, 434
Hin6I	GCGC	2 cut(s)	326, 402
HinP1I	GCGC	2 cut(s)	326, 402
HincII	GTYRAC	1 cut(s)	109
HindII	GTYRAC	1 cut(s)	109
HinfI	GANTC	2 cut(s)	117, 225
HpaII	CCGG	1 cut(s)	78
HphI	GGTGA	4 cut(s)	67, 112, 297, 430
Hpy166II	GTNNAC	3 cut(s)	109, 250, 375
Hpy188I	TCNGA	1 cut(s)	202
Hpy8I	GTNNAC	3 cut(s)	109, 250, 375
Hpy99I	CGWCG	2 cut(s)	26, 257
HpyAV	CCTTC	2 cut(s)	136, 169
HpyCH4III	ACNGT	1 cut(s)	348
HpyCH4IV	ACGT	1 cut(s)	287
HpyCH4V	TGCA	2 cut(s)	428, 444
HpyF10VI	GCNNNNNNNGC	2 cut(s)	60, 95
HpySE526I	ACGT	1 cut(s)	287
Hsp92I	GRCGYC	1 cut(s)	24
Hsp92II	CATG	2 cut(s)	354, 434
HspAI	GCGC	2 cut(s)	326, 402
Kzo9I	GATC	1 cut(s)	160
LmnI	GCTCC	1 cut(s)	80
LpnPI	CCDG	5 cut(s)	91, 124, 152, 430, 454
Lsp1109I	GCAGC	1 cut(s)	340
LweI	GCATC	1 cut(s)	415
MaeI	CTAG	2 cut(s)	311, 378
MaeII	ACGT	1 cut(s)	287
MaeIII	GTNAC	3 cut(s)	73, 184, 283
MalI	GATC	1 cut(s)	162
MbiI	CCGCTC	2 cut(s)	89, 415
MboI	GATC	1 cut(s)	160
MboII	GAAGA	2 cut(s)	155, 166
MflI	RGATCY	1 cut(s)	160
MhlI	GDGCHC	1 cut(s)	173
MluCI	AATT	4 cut(s)	212, 317, 332, 420
MlyI	GAGTC	1 cut(s)	234
MnlI	CCTC	4 cut(s)	104, 238, 318, 400
MspI	CCGG	1 cut(s)	78
MwoI	GCNNNNNNNGC	2 cut(s)	60, 95
NdeII	GATC	1 cut(s)	160
NlaIII	CATG	2 cut(s)	354, 434
NlaIV	GGNNCC	3 cut(s)	47, 82, 270
NmeAIII	GCCGAG	2 cut(s)	430, 436
NmuCI	GTSAC	1 cut(s)	73
NspI	RCATGY	1 cut(s)	434
NspV	TTCGAA	1 cut(s)	391
PaqCI	CACCTGC	1 cut(s)	449
PciI	ACATGT	1 cut(s)	430
PcsI	WCGNNNNNNNCGW	1 cut(s)	102
PfeI	GAWTC	1 cut(s)	117
PflFI	GACNNNGTC	2 cut(s)	26, 224
PkrI	GCNGC	4 cut(s)	20, 85, 88, 330
PleI	GAGTC	1 cut(s)	233
PpsI	GAGTC	1 cut(s)	233
Ppu21I	YACGTR	1 cut(s)	288
PscI	ACATGT	1 cut(s)	430
PspN4I	GGNNCC	3 cut(s)	47, 82, 270
PspPI	GGNCC	1 cut(s)	247
PstI	CTGCAG	1 cut(s)	446
PsuI	RGATCY	1 cut(s)	160
PsyI	GACNNNGTC	2 cut(s)	26, 224
RsaI	GTAC	1 cut(s)	345
RsaNI	GTAC	1 cut(s)	344
SatI	GCNGC	4 cut(s)	19, 84, 87, 329
Sau3AI	GATC	1 cut(s)	160
Sau96I	GGNCC	1 cut(s)	247
SbfI	CCTGCAGG	1 cut(s)	446
SchI	GAGTC	1 cut(s)	234
SdaI	CCTGCAGG	1 cut(s)	446
SduI	GDGCHC	1 cut(s)	173
SetI	ASST	9 cut(s)	114, 180, 249, 285, 290, 310, 316, 443, 449
SfaNI	GCATC	1 cut(s)	415
SfcI	CTRYAG	1 cut(s)	442
SfuI	TTCGAA	1 cut(s)	391
SinI	GGWCC	1 cut(s)	247
SnaBI	TACGTA	1 cut(s)	288
SpeI	ACTAGT	1 cut(s)	377
Sse8387I	CCTGCAGG	1 cut(s)	446
Sse9I	AATT	4 cut(s)	212, 317, 332, 420
SsiI	CCGC	9 cut(s)	18, 43, 52, 61, 84, 87, 123, 272, 415
SspMI	CTAG	2 cut(s)	311, 378
StyI	CCWWGG	1 cut(s)	112
TaaI	ACNGT	1 cut(s)	348
TaiI	ACGT	1 cut(s)	290
TaqI	TCGA	3 cut(s)	173, 181, 391
TaqII	GACCGA	1 cut(s)	237
TasI	AATT	4 cut(s)	212, 317, 332, 420
TatI	WGTACW	1 cut(s)	343
TauI	GCSGC	3 cut(s)	21, 86, 89
TfiI	GAWTC	1 cut(s)	117
TseFI	GTSAC	1 cut(s)	73
TseI	GCWGC	1 cut(s)	328
Tsp45I	GTSAC	1 cut(s)	73
TspDTI	ATGAA	1 cut(s)	308
TspGWI	ACGGA	1 cut(s)	20
Tth111I	GACNNNGTC	2 cut(s)	26, 224
VpaK11BI	GGWCC	1 cut(s)	247
XceI	RCATGY	1 cut(s)	434
XmiI	GTMKAC	1 cut(s)	374
XspI	CTAG	2 cut(s)	311, 378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.