Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001729

Physical Location & Seq

Genomic Coordinates Reverse (-)

54296473 .. 54297508

Gene Structure 1036 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00373020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGACGGAAAGTCAAGGCGGCGACGCCGTCAAAATGCCGAAGCGGAACCACCGCCAGCACCGCCTAATAGCCGTCACCGGAGCCGCTGCTCTCCTCGCTCTCGCCGTCAACCTCGGAATCACCGCCTTCAACTCTCACAGGAACACCAGAAAGAAGAAAGCTTTGACTTTTCTGTGTGCGATGACATTAAACAGCATGCGTGAGGATGTGTACCGTGTTGTCAAAGCTTTTGCTACAAGAGGAGAGTGGGTGAATGCTGAAGCAAAGCACTATACTCAAGCCTTGGTAAGGAGTGAGAACGTTTTTGTGTTTTCGGTGTGTAGAAGAGTAAATGCTGGATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005758 GO:0005829 GO:0005886 GO:0006109 GO:0006111 GO:0006508 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009889 GO:0009987 GO:0010675 GO:0010830 GO:0010906 GO:0016020 GO:0016202 GO:0016787 GO:0019222 GO:0019538 GO:0031323 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0033218 GO:0034641 GO:0042277 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043255 GO:0043603 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0048634 GO:0048641 GO:0050789 GO:0050793 GO:0050794 GO:0051147 GO:0051153 GO:0051239 GO:0062012 GO:0065007 GO:0070011 GO:0070012 GO:0070013 GO:0071704 GO:0071944 GO:0080090 GO:0140096 GO:1901564 GO:1901861 GO:1902809 GO:2000026 GO:2001014

KEGG Pathways

Metabolic & Signaling

ko04614 ko05143 map04614 map05143

Pfam Domains

Protein Families

Peptidase_M3

Protein Analysis

114

Amino Acids

12.69

Weight (kDa)

10.48

Isoelectric Point (pI)

34.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001729)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67690
fragaria_vesca	FvH4_4g24570 FvH4_4g24570 FvH4_4g24570 FvH4_4g24570
malus_domestica	MD02G1151800.v1.1 MD13G1110200.v1.1 MD16G1110100.v1.1 MD16G1110200.v1.1
prunus_persica	Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1
pyrus_communis	pycom13g09590 pycom16g09360
rosa_chinensis	RchiOBHm_Chr4g0431491 RchiOBHm_Chr4g0431531 RchiOBHm_Chr4g0444651
rosa_laevigata	RLG00000006910 RLG00000018869 RLG00000036429
rosa_multiflora	Rmu_sc0000543.1_g000041 Rmu_sc0001207.1_g000024
rosa_roxburghii	Rroxscaffold_5G00372940 Rroxscaffold_5G00372960 Rroxscaffold_5G00372990 Rroxscaffold_5G00373020
rosa_rugosa	Rorug04G0250600 Rorug04G0250700
rosa_samantha	Rh2AG013000 Rh2AG278200 Rh4AG306800 Rh4AG307200 Rh4AG307400 Rh4BG314800 Rh4BG315100 Rh4CG330200 Rh4DG310000 Rh4DG310100 Rh4DG421900 Rh5AG518200 Rh5DG435400 Rh6CG219500
rosa_wichuraiana	Rw4G026630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	18, 43, 52, 61, 84, 123
AclI	AACGTT	1 cut(s)	300
AcuI	CTGAAG	1 cut(s)	279
AcyI	GRCGYC	1 cut(s)	24
AfaI	GTAC	1 cut(s)	212
AfiI	CCNNNNNNNGG	1 cut(s)	288
AgsI	TTSAA	1 cut(s)	130
AhdI	GACNNNNNGTC	1 cut(s)	9
AluBI	AGCT	2 cut(s)	161, 227
AluI	AGCT	2 cut(s)	161, 227
ApeKI	GCWGC	1 cut(s)	86
AsuHPI	GGTGA	3 cut(s)	67, 112, 262
BbvI	GCAGC	1 cut(s)	73
BceAI	ACGGC	3 cut(s)	11, 56, 89
BisI	GCNGC	3 cut(s)	19, 84, 87
BlsI	GCNGC	3 cut(s)	20, 85, 88
BmeRI	GACNNNNNGTC	1 cut(s)	9
BmiI	GGNNCC	2 cut(s)	47, 82
BpuEI	CTTGAG	1 cut(s)	261
BsaHI	GRCGYC	1 cut(s)	24
BsaJI	CCNNGG	2 cut(s)	112, 282
BsaWI	WCCGGW	1 cut(s)	77
BsaXI	ACNNNNNCTCC	2 cut(s)	234, 264
Bsc4I	CCNNNNNNNGG	1 cut(s)	288
BseDI	CCNNGG	2 cut(s)	112, 282
BseGI	GGATG	2 cut(s)	211, 344
BseLI	CCNNNNNNNGG	1 cut(s)	288
BseRI	GAGGAG	2 cut(s)	83, 255
BseXI	GCAGC	1 cut(s)	73
BsiSI	CCGG	1 cut(s)	78
BslI	CCNNNNNNNGG	1 cut(s)	288
BsmI	GAATGC	1 cut(s)	259
BspACI	CCGC	6 cut(s)	18, 43, 52, 61, 84, 123
BspLI	GGNNCC	2 cut(s)	47, 82
BssECI	CCNNGG	2 cut(s)	112, 282
BssNI	GRCGYC	1 cut(s)	24
BssT1I	CCWWGG	1 cut(s)	282
Bst4CI	ACNGT	1 cut(s)	215
Bst6I	CTCTTC	1 cut(s)	319
BstACI	GRCGYC	1 cut(s)	24
BstC8I	GCNNGC	2 cut(s)	56, 197
BstENI	CCTNNNNNAGG	1 cut(s)	286
BstF5I	GGATG	2 cut(s)	211, 344
BstMWI	GCNNNNNNNGC	2 cut(s)	60, 95
BstNSI	RCATGY	1 cut(s)	199
BstV1I	GCAGC	1 cut(s)	73
BtgZI	GCGATG	1 cut(s)	194
BtsCI	GGATG	2 cut(s)	211, 344
Cac8I	GCNNGC	2 cut(s)	56, 197
CseI	GACGC	1 cut(s)	32
Csp6I	GTAC	1 cut(s)	211
CviAII	CATG	1 cut(s)	196
CviJI	RGCY	5 cut(s)	71, 83, 161, 227, 281
CviKI_1	RGCY	5 cut(s)	71, 83, 161, 227, 281
CviQI	GTAC	1 cut(s)	211
DriI	GACNNNNNGTC	1 cut(s)	9
Eam1104I	CTCTTC	1 cut(s)	319
Eam1105I	GACNNNNNGTC	1 cut(s)	9
EarI	CTCTTC	1 cut(s)	319
Eco130I	CCWWGG	1 cut(s)	282
Eco57I	CTGAAG	1 cut(s)	279
EcoNI	CCTNNNNNAGG	1 cut(s)	286
EcoT14I	CCWWGG	1 cut(s)	282
ErhI	CCWWGG	1 cut(s)	282
FaeI	CATG	1 cut(s)	199
FaiI	YATR	2 cut(s)	197, 273
FatI	CATG	1 cut(s)	195
Fnu4HI	GCNGC	3 cut(s)	19, 84, 87
FokI	GGATG	1 cut(s)	218
Fsp4HI	GCNGC	3 cut(s)	19, 84, 87
GluI	GCNGC	3 cut(s)	19, 84, 87
HapII	CCGG	1 cut(s)	78
HgaI	GACGC	1 cut(s)	32
Hin1I	GRCGYC	1 cut(s)	24
Hin1II	CATG	1 cut(s)	199
HincII	GTYRAC	1 cut(s)	109
HindII	GTYRAC	1 cut(s)	109
HindIII	AAGCTT	2 cut(s)	159, 225
HinfI	GANTC	1 cut(s)	117
HpaII	CCGG	1 cut(s)	78
HphI	GGTGA	3 cut(s)	67, 112, 262
Hpy166II	GTNNAC	2 cut(s)	109, 211
Hpy188I	TCNGA	1 cut(s)	116
Hpy8I	GTNNAC	2 cut(s)	109, 211
Hpy99I	CGWCG	1 cut(s)	26
HpyAV	CCTTC	1 cut(s)	136
HpyCH4III	ACNGT	1 cut(s)	215
HpyCH4IV	ACGT	1 cut(s)	300
HpyF10VI	GCNNNNNNNGC	2 cut(s)	60, 95
HpySE526I	ACGT	1 cut(s)	300
Hsp92I	GRCGYC	1 cut(s)	24
Hsp92II	CATG	1 cut(s)	199
LmnI	GCTCC	1 cut(s)	80
LpnPI	CCDG	5 cut(s)	68, 91, 124, 160, 321
Lsp1109I	GCAGC	1 cut(s)	73
MaeII	ACGT	1 cut(s)	300
MaeIII	GTNAC	1 cut(s)	73
MboII	GAAGA	2 cut(s)	166, 336
MnlI	CCTC	4 cut(s)	104, 122, 196, 233
MseI	TTAA	1 cut(s)	188
MspA1I	CMGCKG	1 cut(s)	86
MspI	CCGG	1 cut(s)	78
Mva1269I	GAATGC	1 cut(s)	259
MwoI	GCNNNNNNNGC	2 cut(s)	60, 95
NlaIII	CATG	1 cut(s)	199
NlaIV	GGNNCC	2 cut(s)	47, 82
NmuCI	GTSAC	1 cut(s)	73
NspI	RCATGY	1 cut(s)	199
PaeI	GCATGC	1 cut(s)	199
PcsI	WCGNNNNNNNCGW	1 cut(s)	102
PctI	GAATGC	1 cut(s)	259
PfeI	GAWTC	1 cut(s)	117
PflFI	GACNNNGTC	1 cut(s)	26
PkrI	GCNGC	3 cut(s)	20, 85, 88
Psp1406I	AACGTT	1 cut(s)	300
PspN4I	GGNNCC	2 cut(s)	47, 82
PsyI	GACNNNGTC	1 cut(s)	26
RsaI	GTAC	1 cut(s)	212
RsaNI	GTAC	1 cut(s)	211
SaqAI	TTAA	1 cut(s)	188
SatI	GCNGC	3 cut(s)	19, 84, 87
SetI	ASST	4 cut(s)	114, 163, 229, 303
SmlI	CTYRAG	1 cut(s)	276
SmoI	CTYRAG	1 cut(s)	276
SphI	GCATGC	1 cut(s)	199
SsiI	CCGC	6 cut(s)	18, 43, 52, 61, 84, 123
StyI	CCWWGG	1 cut(s)	282
TaaI	ACNGT	1 cut(s)	215
TaiI	ACGT	1 cut(s)	303
TauI	GCSGC	2 cut(s)	21, 86
TfiI	GAWTC	1 cut(s)	117
Tru1I	TTAA	1 cut(s)	188
Tru9I	TTAA	1 cut(s)	188
TseFI	GTSAC	1 cut(s)	73
TseI	GCWGC	1 cut(s)	86
Tsp45I	GTSAC	1 cut(s)	73
TspGWI	ACGGA	1 cut(s)	20
Tth111I	GACNNNGTC	1 cut(s)	26
XagI	CCTNNNNNAGG	1 cut(s)	286
XceI	RCATGY	1 cut(s)	199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.