RchiOBHm_Chr4g0444651

thimet oligopeptidase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Reverse (-)
65282890 .. 65286543
3654 bp
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UTR
Exon/CDS
Intron
PRQ41228

Sequence Viewer

Length: 294 bp
ATGCGGGGTTATCGAATGTCAAAAGCTGGTGTTTGTTGTCTCCGAGCTCAACAAGAAATTTCAGAAGAAGCTGGTGTGTCAGAGCCCGATTCGAGGATCCCACCCCCACCAGGCAAGTTCTTTTCTATCTCACTATGCCTATTGCGTGAGGATGTGTACCATGTTGTCAAAGCTTTCGCTATGATAGGAGAGTGGGTGAGTGCTGAAGCAAAGCTCTATACTCAAGTCTTGGTAAGGAGCAAGAATGTTTTTGTCTTATTTTTGGTGTGTAGAATAGTAAATGTTGGATGTTGA

Protein Analysis

97

Amino Acids

10.84

Weight (kDa)

8.69

Isoelectric Point (pI)

39.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 4
AclWI GGATC 2 cut(s) 91, 104
AcsI RAATTY 1 cut(s) 57
AcuI CTGAAG 1 cut(s) 225
AfaI GTAC 1 cut(s) 158
AfiI CCNNNNNNNGG 2 cut(s) 93, 110
AjnI CCWGG 1 cut(s) 109
AluBI AGCT 5 cut(s) 26, 47, 71, 173, 214
AluI AGCT 5 cut(s) 26, 47, 71, 173, 214
Alw21I GWGCWC 1 cut(s) 49
Alw26I GTCTC 1 cut(s) 44
AlwI GGATC 2 cut(s) 91, 104
ApoI RAATTY 1 cut(s) 57
AsuHPI GGTGA 1 cut(s) 208
BamHI GGATCC 1 cut(s) 96
BanII GRGCYC 2 cut(s) 49, 87
Bbv12I GWGCWC 1 cut(s) 49
BciT130I CCWGG 1 cut(s) 111
BcoDI GTCTC 1 cut(s) 44
Bme1390I CCNGG 1 cut(s) 111
BmiI GGNNCC 1 cut(s) 98
BmrFI CCNGG 1 cut(s) 111
BpuEI CTTGAG 1 cut(s) 207
BsaXI ACNNNNNCTCC 2 cut(s) 180, 210
Bsc4I CCNNNNNNNGG 2 cut(s) 93, 110
BseBI CCWGG 1 cut(s) 111
BseGI GGATG 2 cut(s) 157, 293
BseLI CCNNNNNNNGG 2 cut(s) 93, 110
BsiHKAI GWGCWC 1 cut(s) 49
BslI CCNNNNNNNGG 2 cut(s) 93, 110
BsmAI GTCTC 1 cut(s) 44
Bsp1286I GDGCHC 2 cut(s) 49, 87
Bsp143I GATC 1 cut(s) 96
BspACI CCGC 1 cut(s) 4
BspLI GGNNCC 1 cut(s) 98
BspPI GGATC 2 cut(s) 91, 104
BssMI GATC 1 cut(s) 96
Bst2UI CCWGG 1 cut(s) 111
BstF5I GGATG 2 cut(s) 157, 293
BstKTI GATC 1 cut(s) 99
BstMAI GTCTC 1 cut(s) 44
BstMBI GATC 1 cut(s) 96
BstNI CCWGG 1 cut(s) 111
BstSCI CCNGG 1 cut(s) 109
BstX2I RGATCY 1 cut(s) 96
BstYI RGATCY 1 cut(s) 96
BtsCI GGATG 2 cut(s) 157, 293
Csp6I GTAC 1 cut(s) 157
CviAII CATG 1 cut(s) 161
CviJI RGCY 6 cut(s) 26, 47, 71, 85, 173, 214
CviKI_1 RGCY 6 cut(s) 26, 47, 71, 85, 173, 214
CviQI GTAC 1 cut(s) 157
DpnI GATC 1 cut(s) 98
DpnII GATC 1 cut(s) 96
Ecl136II GAGCTC 1 cut(s) 47
Eco24I GRGCYC 2 cut(s) 49, 87
Eco53kI GAGCTC 1 cut(s) 47
Eco57I CTGAAG 1 cut(s) 225
EcoICRI GAGCTC 1 cut(s) 47
EcoRII CCWGG 1 cut(s) 109
EcoT38I GRGCYC 2 cut(s) 49, 87
FaeI CATG 1 cut(s) 164
FaiI YATR 4 cut(s) 136, 162, 182, 219
FatI CATG 1 cut(s) 160
FokI GGATG 1 cut(s) 164
FriOI GRGCYC 2 cut(s) 49, 87
Hin1II CATG 1 cut(s) 164
HindIII AAGCTT 1 cut(s) 171
HinfI GANTC 1 cut(s) 89
HphI GGTGA 1 cut(s) 208
Hpy166II GTNNAC 1 cut(s) 157
Hpy188I TCNGA 3 cut(s) 44, 64, 82
Hpy8I GTNNAC 1 cut(s) 157
Hsp92II CATG 1 cut(s) 164
Kzo9I GATC 1 cut(s) 96
LmnI GCTCC 1 cut(s) 237
LpnPI CCDG 4 cut(s) 12, 57, 96, 123
MalI GATC 1 cut(s) 98
MboI GATC 1 cut(s) 96
MboII GAAGA 1 cut(s) 77
MflI RGATCY 1 cut(s) 96
MhlI GDGCHC 2 cut(s) 49, 87
MluCI AATT 1 cut(s) 57
MmeI TCCRAC 1 cut(s) 265
MnlI CCTC 2 cut(s) 87, 142
MspR9I CCNGG 1 cut(s) 111
MvaI CCWGG 1 cut(s) 111
NdeII GATC 1 cut(s) 96
NlaIII CATG 1 cut(s) 164
NlaIV GGNNCC 1 cut(s) 98
PfeI GAWTC 1 cut(s) 89
Psp124BI GAGCTC 1 cut(s) 49
Psp6I CCWGG 1 cut(s) 109
PspGI CCWGG 1 cut(s) 109
PspN4I GGNNCC 1 cut(s) 98
PsuI RGATCY 1 cut(s) 96
RsaI GTAC 1 cut(s) 158
RsaNI GTAC 1 cut(s) 157
SacI GAGCTC 1 cut(s) 49
Sau3AI GATC 1 cut(s) 96
ScrFI CCNGG 1 cut(s) 111
SduI GDGCHC 2 cut(s) 49, 87
SetI ASST 5 cut(s) 28, 49, 73, 175, 216
SmlI CTYRAG 1 cut(s) 222
SmoI CTYRAG 1 cut(s) 222
Sse9I AATT 1 cut(s) 57
SsiI CCGC 1 cut(s) 4
SstI GAGCTC 1 cut(s) 49
StyD4I CCNGG 1 cut(s) 109
TaqI TCGA 2 cut(s) 13, 92
TasI AATT 1 cut(s) 57
TfiI GAWTC 1 cut(s) 89
XapI RAATTY 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.