Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0001729

Physical Location & Seq

Genomic Coordinates Reverse (-)

61927494 .. 61928250

Gene Structure 757 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG307400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGCAAGTCATTTCCAAGTCAAAAGAGGTCCACGACGCTGTCGCTTCGGTTCCACTAGATAAGGTTGCGTATATGAATGTTATTTCACCTCTAGCTGAATTGGAAGCGCAGCAATTTCCACTTGTACAGTCTTGTGTGTTTCCAAAGATGGTGTCTACCAGTGATGATGTTCGAAAAGCAAGCGGCGAGGCCGAGCGGAGAATTGATGCACATGTTCTGACTTGCAGCATGCGTGAGGATGTGTACTGTGTTGTCAAAGCTTGTGCCACGAGAGGAGAGTGGGTGAATGCTGAAGCAAAGCACTATACTCAAGCCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005758 GO:0005829 GO:0005886 GO:0006109 GO:0006111 GO:0006508 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009889 GO:0009987 GO:0010675 GO:0010830 GO:0010906 GO:0016020 GO:0016202 GO:0016787 GO:0019222 GO:0019538 GO:0031323 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0033218 GO:0034641 GO:0042277 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043255 GO:0043603 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0048634 GO:0048641 GO:0050789 GO:0050793 GO:0050794 GO:0051147 GO:0051153 GO:0051239 GO:0062012 GO:0065007 GO:0070011 GO:0070012 GO:0070013 GO:0071704 GO:0071944 GO:0080090 GO:0140096 GO:1901564 GO:1901861 GO:1902809 GO:2000026 GO:2001014

KEGG Pathways

Metabolic & Signaling

ko04614 ko05143 map04614 map05143

Pfam Domains

Protein Families

Peptidase_M3

Protein Analysis

106

Amino Acids

11.73

Weight (kDa)

5.87

Isoelectric Point (pI)

37.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001729)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67690
fragaria_vesca	FvH4_4g24570 FvH4_4g24570 FvH4_4g24570 FvH4_4g24570
malus_domestica	MD02G1151800.v1.1 MD13G1110200.v1.1 MD16G1110100.v1.1 MD16G1110200.v1.1
prunus_persica	Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1
pyrus_communis	pycom13g09590 pycom16g09360
rosa_chinensis	RchiOBHm_Chr4g0431491 RchiOBHm_Chr4g0431531 RchiOBHm_Chr4g0444651
rosa_laevigata	RLG00000006910 RLG00000018869 RLG00000036429
rosa_multiflora	Rmu_sc0000543.1_g000041 Rmu_sc0001207.1_g000024
rosa_roxburghii	Rroxscaffold_5G00372940 Rroxscaffold_5G00372960 Rroxscaffold_5G00372990 Rroxscaffold_5G00373020
rosa_rugosa	Rorug04G0250600 Rorug04G0250700
rosa_samantha	Rh2AG013000 Rh2AG278200 Rh4AG306800 Rh4AG307200 Rh4AG307400 Rh4BG314800 Rh4BG315100 Rh4CG330200 Rh4DG310000 Rh4DG310100 Rh4DG421900 Rh5AG518200 Rh5DG435400 Rh6CG219500
rosa_wichuraiana	Rw4G026630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	196
AccI	GTMKAC	1 cut(s)	155
AciI	CCGC	2 cut(s)	183, 196
AcuI	CTGAAG	1 cut(s)	312
AfaI	GTAC	2 cut(s)	126, 245
AflIII	ACRYGT	1 cut(s)	211
AluBI	AGCT	2 cut(s)	95, 260
AluI	AGCT	2 cut(s)	95, 260
AoxI	GGCC	1 cut(s)	189
ApeKI	GCWGC	2 cut(s)	109, 225
ArsI	GACNNNNNNTTYG	2 cut(s)	137, 169
AspLEI	GCGC	1 cut(s)	109
AspS9I	GGNCC	1 cut(s)	28
AsuHPI	GGTGA	2 cut(s)	78, 295
AsuII	TTCGAA	1 cut(s)	172
AvaII	GGWCC	1 cut(s)	28
BauI	CACGAG	1 cut(s)	268
BbvI	GCAGC	2 cut(s)	121, 237
BccI	CCATC	1 cut(s)	142
BfaI	CTAG	2 cut(s)	56, 92
BisI	GCNGC	3 cut(s)	110, 184, 226
BlsI	GCNGC	3 cut(s)	111, 185, 227
Bme18I	GGWCC	1 cut(s)	28
BmgT120I	GGNCC	1 cut(s)	28
BmiI	GGNNCC	1 cut(s)	51
BmsI	GCATC	1 cut(s)	196
Bpu14I	TTCGAA	1 cut(s)	172
BpuEI	CTTGAG	1 cut(s)	294
BsaXI	ACNNNNNCTCC	2 cut(s)	267, 297
Bse1I	ACTGG	1 cut(s)	159
BseGI	GGATG	1 cut(s)	244
BseNI	ACTGG	1 cut(s)	159
BseRI	GAGGAG	1 cut(s)	288
BseXI	GCAGC	2 cut(s)	121, 237
BshFI	GGCC	1 cut(s)	191
BsmI	GAATGC	1 cut(s)	292
BsnI	GGCC	1 cut(s)	191
Bsp119I	TTCGAA	1 cut(s)	172
Bsp1407I	TGTACA	1 cut(s)	124
BspACI	CCGC	2 cut(s)	183, 196
BspANI	GGCC	1 cut(s)	191
BspLI	GGNNCC	1 cut(s)	51
BspT104I	TTCGAA	1 cut(s)	172
BsrBI	CCGCTC	1 cut(s)	196
BsrGI	TGTACA	1 cut(s)	124
BsrI	ACTGG	1 cut(s)	159
BssSI	CACGAG	1 cut(s)	268
Bst2BI	CACGAG	1 cut(s)	268
Bst4CI	ACNGT	2 cut(s)	129, 248
BstAUI	TGTACA	1 cut(s)	124
BstBI	TTCGAA	1 cut(s)	172
BstC8I	GCNNGC	2 cut(s)	181, 230
BstF5I	GGATG	1 cut(s)	244
BstHHI	GCGC	1 cut(s)	109
BstNSI	RCATGY	2 cut(s)	215, 232
BstV1I	GCAGC	2 cut(s)	121, 237
BsuRI	GGCC	1 cut(s)	191
BtsCI	GGATG	1 cut(s)	244
BtsIMutI	CAGTG	1 cut(s)	166
Cac8I	GCNNGC	2 cut(s)	181, 230
CfoI	GCGC	1 cut(s)	109
Cfr13I	GGNCC	1 cut(s)	28
CseI	GACGC	1 cut(s)	44
Csp6I	GTAC	2 cut(s)	125, 244
CviAII	CATG	2 cut(s)	212, 229
CviJI	RGCY	4 cut(s)	95, 191, 260, 314
CviKI_1	RGCY	4 cut(s)	95, 191, 260, 314
CviQI	GTAC	2 cut(s)	125, 244
Eco47I	GGWCC	1 cut(s)	28
Eco57I	CTGAAG	1 cut(s)	312
FaeI	CATG	2 cut(s)	215, 232
FaiI	YATR	5 cut(s)	72, 74, 213, 230, 306
FatI	CATG	2 cut(s)	211, 228
FblI	GTMKAC	1 cut(s)	155
Fnu4HI	GCNGC	3 cut(s)	110, 184, 226
FokI	GGATG	1 cut(s)	251
Fsp4HI	GCNGC	3 cut(s)	110, 184, 226
FspBI	CTAG	2 cut(s)	56, 92
GlaI	GCGC	1 cut(s)	108
GluI	GCNGC	3 cut(s)	110, 184, 226
HaeIII	GGCC	1 cut(s)	191
HgaI	GACGC	1 cut(s)	44
HhaI	GCGC	1 cut(s)	109
Hin1II	CATG	2 cut(s)	215, 232
Hin6I	GCGC	1 cut(s)	107
HinP1I	GCGC	1 cut(s)	107
HindIII	AAGCTT	1 cut(s)	258
HphI	GGTGA	2 cut(s)	78, 295
Hpy166II	GTNNAC	3 cut(s)	31, 156, 244
Hpy188I	TCNGA	1 cut(s)	219
Hpy8I	GTNNAC	3 cut(s)	31, 156, 244
Hpy99I	CGWCG	1 cut(s)	38
HpyCH4III	ACNGT	2 cut(s)	129, 248
HpyCH4V	TGCA	3 cut(s)	4, 209, 225
Hsp92II	CATG	2 cut(s)	215, 232
HspAI	GCGC	1 cut(s)	107
LpnPI	CCDG	1 cut(s)	172
Lsp1109I	GCAGC	2 cut(s)	121, 237
LweI	GCATC	1 cut(s)	196
MaeI	CTAG	2 cut(s)	56, 92
MbiI	CCGCTC	1 cut(s)	196
MluCI	AATT	3 cut(s)	98, 113, 201
MnlI	CCTC	5 cut(s)	19, 99, 181, 229, 266
Mva1269I	GAATGC	1 cut(s)	292
NlaIII	CATG	2 cut(s)	215, 232
NlaIV	GGNNCC	1 cut(s)	51
NmeAIII	GCCGAG	1 cut(s)	217
NspI	RCATGY	2 cut(s)	215, 232
NspV	TTCGAA	1 cut(s)	172
PaeI	GCATGC	1 cut(s)	232
PciI	ACATGT	1 cut(s)	211
PctI	GAATGC	1 cut(s)	292
PflFI	GACNNNGTC	1 cut(s)	38
PkrI	GCNGC	3 cut(s)	111, 185, 227
PscI	ACATGT	1 cut(s)	211
PspN4I	GGNNCC	1 cut(s)	51
PspPI	GGNCC	1 cut(s)	28
PsyI	GACNNNGTC	1 cut(s)	38
RsaI	GTAC	2 cut(s)	126, 245
RsaNI	GTAC	2 cut(s)	125, 244
SatI	GCNGC	3 cut(s)	110, 184, 226
Sau96I	GGNCC	1 cut(s)	28
SetI	ASST	5 cut(s)	30, 66, 91, 97, 262
SfaNI	GCATC	1 cut(s)	196
SfuI	TTCGAA	1 cut(s)	172
SinI	GGWCC	1 cut(s)	28
SmlI	CTYRAG	1 cut(s)	309
SmoI	CTYRAG	1 cut(s)	309
SphI	GCATGC	1 cut(s)	232
Sse9I	AATT	3 cut(s)	98, 113, 201
SsiI	CCGC	2 cut(s)	183, 196
SspMI	CTAG	2 cut(s)	56, 92
TaaI	ACNGT	2 cut(s)	129, 248
TaqI	TCGA	1 cut(s)	172
TasI	AATT	3 cut(s)	98, 113, 201
TatI	WGTACW	2 cut(s)	124, 243
TauI	GCSGC	1 cut(s)	186
TscAI	CASTG	1 cut(s)	166
TseI	GCWGC	2 cut(s)	109, 225
TspDTI	ATGAA	1 cut(s)	89
TspRI	CASTG	1 cut(s)	166
Tth111I	GACNNNGTC	1 cut(s)	38
VpaK11BI	GGWCC	1 cut(s)	28
XceI	RCATGY	2 cut(s)	215, 232
XmiI	GTMKAC	1 cut(s)	155
XspI	CTAG	2 cut(s)	56, 92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.