Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001729

Physical Location & Seq

Genomic Coordinates Forward (+)

42263864 .. 42264234

Gene Structure 371 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0250600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGCAGTTGATATTGGGAGTGGTAGCCTCAGCAACTGGGAGTGCCGGTAGTGTTGCATATAGCATACTCAAGGGTGATCTTTGCTCTACTTACAACCGCTACTGTCGACATCTAGGAGTCGCCTTGGGGTTCGCCTTATTTGCCTCAGTTTTGCTTGTCGTTCTTCTATGGACCTCCCTAATTAGTCTCTACAAAAGGATCCCCAAACAAACCTTTGAGACACCACAACCACTTGCACAGTCTCCGTTACAAACCCCACCACAAGCGCAGACCTTACAGACTCCACCACAGGCACAAGAAGGAACTAAAACATATGCATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005758 GO:0005829 GO:0005886 GO:0006109 GO:0006111 GO:0006508 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009889 GO:0009987 GO:0010675 GO:0010830 GO:0010906 GO:0016020 GO:0016202 GO:0016787 GO:0019222 GO:0019538 GO:0031323 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0033218 GO:0034641 GO:0042277 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043255 GO:0043603 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0048634 GO:0048641 GO:0050789 GO:0050793 GO:0050794 GO:0051147 GO:0051153 GO:0051239 GO:0062012 GO:0065007 GO:0070011 GO:0070012 GO:0070013 GO:0071704 GO:0071944 GO:0080090 GO:0140096 GO:1901564 GO:1901861 GO:1902809 GO:2000026 GO:2001014

KEGG Pathways

Metabolic & Signaling

ko04614 ko05143 map04614 map05143

Pfam Domains

Protein Families

Peptidase_M3

Protein Analysis

107

Amino Acids

11.56

Weight (kDa)

9.3

Isoelectric Point (pI)

46.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CASP_dom	PF04535	2 - 51	1.5e-06	Casparian strip membrane protein domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001729)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67690
fragaria_vesca	FvH4_4g24570 FvH4_4g24570 FvH4_4g24570 FvH4_4g24570
malus_domestica	MD02G1151800.v1.1 MD13G1110200.v1.1 MD16G1110100.v1.1 MD16G1110200.v1.1
prunus_persica	Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1
pyrus_communis	pycom13g09590 pycom16g09360
rosa_chinensis	RchiOBHm_Chr4g0431491 RchiOBHm_Chr4g0431531 RchiOBHm_Chr4g0444651
rosa_laevigata	RLG00000006910 RLG00000018869 RLG00000036429
rosa_multiflora	Rmu_sc0000543.1_g000041 Rmu_sc0001207.1_g000024
rosa_roxburghii	Rroxscaffold_5G00372940 Rroxscaffold_5G00372960 Rroxscaffold_5G00372990 Rroxscaffold_5G00373020
rosa_rugosa	Rorug04G0250600 Rorug04G0250700
rosa_samantha	Rh2AG013000 Rh2AG278200 Rh4AG306800 Rh4AG307200 Rh4AG307400 Rh4BG314800 Rh4BG315100 Rh4CG330200 Rh4DG310000 Rh4DG310100 Rh4DG421900 Rh5AG518200 Rh5DG435400 Rh6CG219500
rosa_wichuraiana	Rw4G026630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	106
AciI	CCGC	1 cut(s)	97
AclWI	GGATC	2 cut(s)	193, 206
Alw26I	GTCTC	3 cut(s)	191, 212, 246
AlwI	GGATC	2 cut(s)	193, 206
AlwNI	CAGNNNCTG	1 cut(s)	35
AspLEI	GCGC	1 cut(s)	268
AspS9I	GGNCC	1 cut(s)	171
AsuHPI	GGTGA	1 cut(s)	86
AvaII	GGWCC	1 cut(s)	171
BamHI	GGATCC	1 cut(s)	198
BbvCI	CCTCAGC	1 cut(s)	28
BcoDI	GTCTC	3 cut(s)	191, 212, 246
BfaI	CTAG	1 cut(s)	113
Bme18I	GGWCC	1 cut(s)	171
BmgT120I	GGNCC	1 cut(s)	171
BmiI	GGNNCC	1 cut(s)	200
BmrI	ACTGGG	1 cut(s)	45
BmuI	ACTGGG	1 cut(s)	45
Bpu10I	CCTNAGC	1 cut(s)	28
BpuEI	CTTGAG	1 cut(s)	53
BsaJI	CCNNGG	1 cut(s)	123
BsaXI	ACNNNNNCTCC	2 cut(s)	31, 61
Bse118I	RCCGGY	1 cut(s)	44
Bse1I	ACTGG	1 cut(s)	40
BseDI	CCNNGG	1 cut(s)	123
BseMII	CTCAG	2 cut(s)	42, 159
BseNI	ACTGG	1 cut(s)	40
BsiSI	CCGG	1 cut(s)	45
BsmAI	GTCTC	3 cut(s)	191, 212, 246
Bsp143I	GATC	2 cut(s)	76, 198
BspACI	CCGC	1 cut(s)	97
BspCNI	CTCAG	2 cut(s)	41, 158
BspLI	GGNNCC	1 cut(s)	200
BspPI	GGATC	2 cut(s)	193, 206
BsrFI	RCCGGY	1 cut(s)	44
BsrI	ACTGG	1 cut(s)	40
BssAI	RCCGGY	1 cut(s)	44
BssECI	CCNNGG	1 cut(s)	123
BssMI	GATC	2 cut(s)	76, 198
BssT1I	CCWWGG	1 cut(s)	123
Bst4CI	ACNGT	2 cut(s)	104, 240
BstDEI	CTNAG	2 cut(s)	28, 145
BstHHI	GCGC	1 cut(s)	268
BstKTI	GATC	2 cut(s)	79, 201
BstMAI	GTCTC	3 cut(s)	191, 212, 246
BstMBI	GATC	2 cut(s)	76, 198
BstMWI	GCNNNNNNNGC	1 cut(s)	140
BstX2I	RGATCY	1 cut(s)	198
BstYI	RGATCY	1 cut(s)	198
CaiI	CAGNNNCTG	1 cut(s)	35
CfoI	GCGC	1 cut(s)	268
Cfr10I	RCCGGY	1 cut(s)	44
Cfr13I	GGNCC	1 cut(s)	171
CviJI	RGCY	1 cut(s)	26
CviKI_1	RGCY	1 cut(s)	26
DdeI	CTNAG	2 cut(s)	28, 145
DpnI	GATC	2 cut(s)	78, 200
DpnII	GATC	2 cut(s)	76, 198
Eco130I	CCWWGG	1 cut(s)	123
Eco47I	GGWCC	1 cut(s)	171
EcoT14I	CCWWGG	1 cut(s)	123
EcoT22I	ATGCAT	1 cut(s)	319
ErhI	CCWWGG	1 cut(s)	123
FaiI	YATR	7 cut(s)	58, 60, 65, 169, 313, 315, 319
FauNDI	CATATG	1 cut(s)	313
FblI	GTMKAC	1 cut(s)	106
FspBI	CTAG	1 cut(s)	113
GlaI	GCGC	1 cut(s)	267
HapII	CCGG	1 cut(s)	45
HhaI	GCGC	1 cut(s)	268
Hin6I	GCGC	1 cut(s)	266
HinP1I	GCGC	1 cut(s)	266
HincII	GTYRAC	1 cut(s)	107
HindII	GTYRAC	1 cut(s)	107
HinfI	GANTC	2 cut(s)	117, 280
HpaII	CCGG	1 cut(s)	45
HphI	GGTGA	1 cut(s)	86
Hpy166II	GTNNAC	1 cut(s)	107
Hpy8I	GTNNAC	1 cut(s)	107
HpyAV	CCTTC	1 cut(s)	293
HpyCH4III	ACNGT	2 cut(s)	104, 240
HpyCH4V	TGCA	4 cut(s)	4, 56, 236, 317
HpyF10VI	GCNNNNNNNGC	1 cut(s)	140
HpyF3I	CTNAG	2 cut(s)	28, 145
HspAI	GCGC	1 cut(s)	266
Kzo9I	GATC	2 cut(s)	76, 198
LpnPI	CCDG	3 cut(s)	21, 58, 275
MaeI	CTAG	1 cut(s)	113
MaeIII	GTNAC	1 cut(s)	246
MalI	GATC	2 cut(s)	78, 200
MboI	GATC	2 cut(s)	76, 198
MboII	GAAGA	1 cut(s)	155
MflI	RGATCY	1 cut(s)	198
MluCI	AATT	1 cut(s)	180
MlyI	GAGTC	2 cut(s)	126, 274
MnlI	CCTC	3 cut(s)	37, 154, 184
Mph1103I	ATGCAT	1 cut(s)	319
MseI	TTAA	1 cut(s)	322
MspI	CCGG	1 cut(s)	45
MwoI	GCNNNNNNNGC	1 cut(s)	140
NdeI	CATATG	1 cut(s)	313
NdeII	GATC	2 cut(s)	76, 198
NlaIV	GGNNCC	1 cut(s)	200
NsiI	ATGCAT	1 cut(s)	319
PleI	GAGTC	2 cut(s)	125, 274
PpsI	GAGTC	2 cut(s)	125, 274
PspN4I	GGNNCC	1 cut(s)	200
PspPI	GGNCC	1 cut(s)	171
PstNI	CAGNNNCTG	1 cut(s)	35
PsuI	RGATCY	1 cut(s)	198
SalI	GTCGAC	1 cut(s)	105
SaqAI	TTAA	1 cut(s)	322
Sau3AI	GATC	2 cut(s)	76, 198
Sau96I	GGNCC	1 cut(s)	171
SchI	GAGTC	2 cut(s)	126, 274
SetI	ASST	3 cut(s)	176, 215, 275
SinI	GGWCC	1 cut(s)	171
SmlI	CTYRAG	1 cut(s)	68
SmoI	CTYRAG	1 cut(s)	68
Sse9I	AATT	1 cut(s)	180
SsiI	CCGC	1 cut(s)	97
SspMI	CTAG	1 cut(s)	113
StyI	CCWWGG	1 cut(s)	123
TaaI	ACNGT	2 cut(s)	104, 240
TaqI	TCGA	1 cut(s)	106
TasI	AATT	1 cut(s)	180
Tru1I	TTAA	1 cut(s)	322
Tru9I	TTAA	1 cut(s)	322
TspGWI	ACGGA	1 cut(s)	234
VpaK11BI	GGWCC	1 cut(s)	171
XmiI	GTMKAC	1 cut(s)	106
XspI	CTAG	1 cut(s)	113
Zsp2I	ATGCAT	1 cut(s)	319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.