Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0001729

Physical Location & Seq

Genomic Coordinates Forward (+)

7741341 .. 7742836

Gene Structure 1496 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1110100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGCAATTTATCTCCCGGCTTATAAAATTGAGTCAATTGCCTCGCCTCCCTCCCTTTTCCGCCAATTACACCTCTCACAAAAACAAATGGCGGAAACTCGGGGAAACGGCGAGAAAATGCCCAAACAGAAGTGGGAACGCAGCAGGCTACTGGCCTTCGGAGGCGCCGCTGCTCTGCTCGCCGTCGCCGCTACCCTTGGAATCACCGCCTTCAATGCTCACACTAAGAACAGAAAGAAGAAATGTTTATCTTCAGGGCTCTAAGGTTCAGGCTAATCTATCGGCGTCCGAAATTTTGAAATTGGCGGACCGAATAATTTCAAAGTCGAAAGAGGTCCACGATGCGGTTGCTTCGGTTCCACTCGACAAGGTTGTTACATATATGAACGTTATTTCGCCTCTAGCAGAGTTAGAGGCGCAACAATTTCCACTTGTCCAGTCTTGTGTGTTTCCTAAGATGGCTTCCACTTCCGATGATGTTCACAAAGCAAGTGCCGAAGCAGAGCGGAGAATTGATGCCCATGTTCTGACTTGCAGGTATAGTTCATTACTGGTGGATGATGATCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005758 GO:0005829 GO:0005886 GO:0006109 GO:0006111 GO:0006508 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009889 GO:0009987 GO:0010675 GO:0010830 GO:0010906 GO:0016020 GO:0016202 GO:0016787 GO:0019222 GO:0019538 GO:0031323 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0033218 GO:0034641 GO:0042277 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043255 GO:0043603 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0048634 GO:0048641 GO:0050789 GO:0050793 GO:0050794 GO:0051147 GO:0051153 GO:0051239 GO:0062012 GO:0065007 GO:0070011 GO:0070012 GO:0070013 GO:0071704 GO:0071944 GO:0080090 GO:0140096 GO:1901564 GO:1901861 GO:1902809 GO:2000026 GO:2001014

KEGG Pathways

Metabolic & Signaling

ko04614 ko05143 map04614 map05143

Pfam Domains

Protein Families

Peptidase_M3

Protein Analysis

190

Amino Acids

20.99

Weight (kDa)

9.08

Isoelectric Point (pI)

56.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001729)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67690
fragaria_vesca	FvH4_4g24570 FvH4_4g24570 FvH4_4g24570 FvH4_4g24570
malus_domestica	MD02G1151800.v1.1 MD13G1110200.v1.1 MD16G1110100.v1.1 MD16G1110200.v1.1
prunus_persica	Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1
pyrus_communis	pycom13g09590 pycom16g09360
rosa_chinensis	RchiOBHm_Chr4g0431491 RchiOBHm_Chr4g0431531 RchiOBHm_Chr4g0444651
rosa_laevigata	RLG00000006910 RLG00000018869 RLG00000036429
rosa_multiflora	Rmu_sc0000543.1_g000041 Rmu_sc0001207.1_g000024
rosa_roxburghii	Rroxscaffold_5G00372940 Rroxscaffold_5G00372960 Rroxscaffold_5G00372990 Rroxscaffold_5G00373020
rosa_rugosa	Rorug04G0250600 Rorug04G0250700
rosa_samantha	Rh2AG013000 Rh2AG278200 Rh4AG306800 Rh4AG307200 Rh4AG307400 Rh4BG314800 Rh4BG315100 Rh4CG330200 Rh4DG310000 Rh4DG310100 Rh4DG421900 Rh5AG518200 Rh5DG435400 Rh6CG219500
rosa_wichuraiana	Rw4G026630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	23
Acc36I	ACCTGC	1 cut(s)	525
AccB1I	GGYRCC	1 cut(s)	163
AccBSI	CCGCTC	1 cut(s)	505
AciI	CCGC	8 cut(s)	60, 91, 167, 188, 206, 305, 344, 505
AclI	AACGTT	1 cut(s)	387
AclWI	GGATC	1 cut(s)	557
AcsI	RAATTY	1 cut(s)	291
AcuI	CTGAAG	1 cut(s)	236
AcyI	GRCGYC	2 cut(s)	164, 284
AfiI	CCNNNNNNNGG	1 cut(s)	343
AgsI	TTSAA	3 cut(s)	213, 298, 321
AlwI	GGATC	1 cut(s)	557
Ama87I	CYCGRG	1 cut(s)	98
AoxI	GGCC	1 cut(s)	152
ApeKI	GCWGC	2 cut(s)	140, 169
ApoI	RAATTY	1 cut(s)	291
Asp700I	GAANNNNTTC	1 cut(s)	316
AspLEI	GCGC	2 cut(s)	166, 418
AspS9I	GGNCC	2 cut(s)	307, 334
AsuC2I	CCSGG	1 cut(s)	16
AsuHPI	GGTGA	1 cut(s)	195
AvaI	CYCGRG	1 cut(s)	98
AvaII	GGWCC	2 cut(s)	307, 334
BanI	GGYRCC	1 cut(s)	163
BanII	GRGCYC	1 cut(s)	260
BbvI	GCAGC	2 cut(s)	152, 156
BccI	CCATC	1 cut(s)	451
BceAI	ACGGC	2 cut(s)	123, 166
BcgI	CGANNNNNNTGC	2 cut(s)	329, 363
BcnI	CCSGG	1 cut(s)	16
BfaI	CTAG	1 cut(s)	401
BfoI	RGCGCY	1 cut(s)	167
BfuAI	ACCTGC	1 cut(s)	525
BisI	GCNGC	4 cut(s)	141, 167, 170, 188
BlsI	GCNGC	4 cut(s)	142, 168, 171, 189
Bme1390I	CCNGG	1 cut(s)	16
Bme18I	GGWCC	2 cut(s)	307, 334
BmeT110I	CYCGRG	1 cut(s)	98
BmgT120I	GGNCC	2 cut(s)	307, 334
BmiI	GGNNCC	2 cut(s)	165, 357
BmrFI	CCNGG	1 cut(s)	16
BmsI	GCATC	2 cut(s)	331, 505
BpuMI	CCSGG	1 cut(s)	16
BsaBI	GATNNNNATC	1 cut(s)	561
BsaHI	GRCGYC	2 cut(s)	164, 284
BsaJI	CCNNGG	1 cut(s)	195
Bsc4I	CCNNNNNNNGG	1 cut(s)	343
Bse1I	ACTGG	3 cut(s)	155, 436, 555
Bse8I	GATNNNNATC	1 cut(s)	561
BseDI	CCNNGG	1 cut(s)	195
BseGI	GGATG	1 cut(s)	562
BseJI	GATNNNNATC	1 cut(s)	561
BseLI	CCNNNNNNNGG	1 cut(s)	343
BseNI	ACTGG	3 cut(s)	155, 436, 555
BseXI	GCAGC	2 cut(s)	152, 156
BshFI	GGCC	1 cut(s)	154
BshNI	GGYRCC	1 cut(s)	163
BsiHKCI	CYCGRG	1 cut(s)	98
BsiSI	CCGG	1 cut(s)	16
BslI	CCNNNNNNNGG	1 cut(s)	343
BsnI	GGCC	1 cut(s)	154
BsoBI	CYCGRG	1 cut(s)	98
Bsp1286I	GDGCHC	1 cut(s)	260
Bsp143I	GATC	1 cut(s)	562
BspACI	CCGC	8 cut(s)	60, 91, 167, 188, 206, 305, 344, 505
BspANI	GGCC	1 cut(s)	154
BspLI	GGNNCC	2 cut(s)	165, 357
BspMI	ACCTGC	1 cut(s)	525
BspPI	GGATC	1 cut(s)	557
BspT107I	GGYRCC	1 cut(s)	163
BsrBI	CCGCTC	1 cut(s)	505
BsrI	ACTGG	3 cut(s)	155, 436, 555
BssECI	CCNNGG	1 cut(s)	195
BssMI	GATC	1 cut(s)	562
BssNI	GRCGYC	2 cut(s)	164, 284
BssT1I	CCWWGG	1 cut(s)	195
BstACI	GRCGYC	2 cut(s)	164, 284
BstC8I	GCNNGC	2 cut(s)	145, 179
BstDEI	CTNAG	3 cut(s)	224, 261, 453
BstF5I	GGATG	1 cut(s)	562
BstH2I	RGCGCY	1 cut(s)	167
BstHHI	GCGC	2 cut(s)	166, 418
BstKTI	GATC	1 cut(s)	565
BstMBI	GATC	1 cut(s)	562
BstMWI	GCNNNNNNNGC	3 cut(s)	178, 187, 214
BstSCI	CCNGG	1 cut(s)	14
BstV1I	GCAGC	2 cut(s)	152, 156
BsuRI	GGCC	1 cut(s)	154
BtsCI	GGATG	1 cut(s)	562
BveI	ACCTGC	1 cut(s)	525
Cac8I	GCNNGC	2 cut(s)	145, 179
CfoI	GCGC	2 cut(s)	166, 418
Cfr13I	GGNCC	2 cut(s)	307, 334
CpoI	CGGWCCG	1 cut(s)	307
CseI	GACGC	1 cut(s)	273
CspI	CGGWCCG	1 cut(s)	307
CviAII	CATG	1 cut(s)	521
CviJI	RGCY	6 cut(s)	19, 147, 154, 258, 272, 461
CviKI_1	RGCY	6 cut(s)	19, 147, 154, 258, 272, 461
DdeI	CTNAG	3 cut(s)	224, 261, 453
DinI	GGCGCC	1 cut(s)	165
DpnI	GATC	1 cut(s)	564
DpnII	GATC	1 cut(s)	562
EciI	GGCGGA	3 cut(s)	49, 106, 320
Eco130I	CCWWGG	1 cut(s)	195
Eco24I	GRGCYC	1 cut(s)	260
Eco47I	GGWCC	2 cut(s)	307, 334
Eco57I	CTGAAG	1 cut(s)	236
Eco88I	CYCGRG	1 cut(s)	98
EcoT14I	CCWWGG	1 cut(s)	195
EcoT38I	GRGCYC	1 cut(s)	260
EgeI	GGCGCC	1 cut(s)	165
EheI	GGCGCC	1 cut(s)	165
ErhI	CCWWGG	1 cut(s)	195
FaeI	CATG	1 cut(s)	524
FaiI	YATR	6 cut(s)	23, 379, 381, 383, 522, 540
FatI	CATG	1 cut(s)	520
Fnu4HI	GCNGC	4 cut(s)	141, 167, 170, 188
FriOI	GRGCYC	1 cut(s)	260
Fsp4HI	GCNGC	4 cut(s)	141, 167, 170, 188
FspBI	CTAG	1 cut(s)	401
GlaI	GCGC	2 cut(s)	165, 417
GluI	GCNGC	4 cut(s)	141, 167, 170, 188
HaeII	RGCGCY	1 cut(s)	167
HaeIII	GGCC	1 cut(s)	154
HapII	CCGG	1 cut(s)	16
HgaI	GACGC	1 cut(s)	273
HhaI	GCGC	2 cut(s)	166, 418
Hin1I	GRCGYC	2 cut(s)	164, 284
Hin1II	CATG	1 cut(s)	524
Hin6I	GCGC	2 cut(s)	164, 416
HinP1I	GCGC	2 cut(s)	164, 416
HinfI	GANTC	2 cut(s)	31, 200
HpaII	CCGG	1 cut(s)	16
HphI	GGTGA	1 cut(s)	195
Hpy166II	GTNNAC	2 cut(s)	337, 481
Hpy188I	TCNGA	4 cut(s)	160, 289, 472, 528
Hpy8I	GTNNAC	2 cut(s)	337, 481
Hpy99I	CGWCG	1 cut(s)	187
HpyAV	CCTTC	2 cut(s)	165, 219
HpyCH4IV	ACGT	1 cut(s)	387
HpyCH4V	TGCA	2 cut(s)	4, 534
HpyF10VI	GCNNNNNNNGC	3 cut(s)	178, 187, 214
HpyF3I	CTNAG	3 cut(s)	224, 261, 453
HpySE526I	ACGT	1 cut(s)	387
Hsp92I	GRCGYC	2 cut(s)	164, 284
Hsp92II	CATG	1 cut(s)	524
HspAI	GCGC	2 cut(s)	164, 416
KasI	GGCGCC	1 cut(s)	163
Kzo9I	GATC	1 cut(s)	562
LpnPI	CCDG	8 cut(s)	29, 129, 136, 239, 254, 449, 520, 536
Lsp1109I	GCAGC	2 cut(s)	152, 156
LweI	GCATC	2 cut(s)	331, 505
MaeI	CTAG	1 cut(s)	401
MaeII	ACGT	1 cut(s)	387
MaeIII	GTNAC	1 cut(s)	373
MalI	GATC	1 cut(s)	564
MbiI	CCGCTC	1 cut(s)	505
MboI	GATC	1 cut(s)	562
MboII	GAAGA	2 cut(s)	242, 249
MfeI	CAATTG	1 cut(s)	35
MhlI	GDGCHC	1 cut(s)	260
MluCI	AATT	9 cut(s)	5, 26, 35, 64, 291, 299, 315, 422, 510
Mly113I	GGCGCC	1 cut(s)	164
MlyI	GAGTC	1 cut(s)	40
MnlI	CCTC	8 cut(s)	51, 56, 60, 82, 154, 325, 406, 408
MroXI	GAANNNNTTC	1 cut(s)	316
MspA1I	CMGCKG	1 cut(s)	169
MspI	CCGG	1 cut(s)	16
MspR9I	CCNGG	1 cut(s)	16
MunI	CAATTG	1 cut(s)	35
MwoI	GCNNNNNNNGC	3 cut(s)	178, 187, 214
NarI	GGCGCC	1 cut(s)	164
NciI	CCSGG	1 cut(s)	16
NdeII	GATC	1 cut(s)	562
NlaIII	CATG	1 cut(s)	524
NlaIV	GGNNCC	2 cut(s)	165, 357
PdmI	GAANNNNTTC	1 cut(s)	316
PfeI	GAWTC	1 cut(s)	200
PkrI	GCNGC	4 cut(s)	142, 168, 171, 189
PleI	GAGTC	1 cut(s)	39
PluTI	GGCGCC	1 cut(s)	167
PpsI	GAGTC	1 cut(s)	39
PsiI	TTATAA	1 cut(s)	23
Psp1406I	AACGTT	1 cut(s)	387
PspN4I	GGNNCC	2 cut(s)	165, 357
PspPI	GGNCC	2 cut(s)	307, 334
Rsr2I	CGGWCCG	1 cut(s)	307
RsrII	CGGWCCG	1 cut(s)	307
SatI	GCNGC	4 cut(s)	141, 167, 170, 188
Sau3AI	GATC	1 cut(s)	562
Sau96I	GGNCC	2 cut(s)	307, 334
SchI	GAGTC	1 cut(s)	40
ScrFI	CCNGG	1 cut(s)	16
SduI	GDGCHC	1 cut(s)	260
SetI	ASST	6 cut(s)	74, 267, 336, 372, 390, 539
SfaNI	GCATC	2 cut(s)	331, 505
SfoI	GGCGCC	1 cut(s)	165
SinI	GGWCC	2 cut(s)	307, 334
Sse9I	AATT	9 cut(s)	5, 26, 35, 64, 291, 299, 315, 422, 510
SsiI	CCGC	8 cut(s)	60, 91, 167, 188, 206, 305, 344, 505
SspDI	GGCGCC	1 cut(s)	163
SspMI	CTAG	1 cut(s)	401
StyD4I	CCNGG	1 cut(s)	14
StyI	CCWWGG	1 cut(s)	195
TaiI	ACGT	1 cut(s)	390
TaqI	TCGA	2 cut(s)	326, 363
TaqII	GACCGA	1 cut(s)	324
TasI	AATT	9 cut(s)	5, 26, 35, 64, 291, 299, 315, 422, 510
TauI	GCSGC	2 cut(s)	169, 190
TfiI	GAWTC	1 cut(s)	200
TseI	GCWGC	2 cut(s)	140, 169
TspDTI	ATGAA	2 cut(s)	398, 534
VpaK11BI	GGWCC	2 cut(s)	307, 334
XapI	RAATTY	1 cut(s)	291
XmnI	GAANNNNTTC	1 cut(s)	316
XspI	CTAG	1 cut(s)	401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.