Rroxscaffold_5G00372960

thimet oligopeptidase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Reverse (-)
54244011 .. 54247883
3873 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00372960.1

Sequence Viewer

Length: 1128 bp
ATGACGGAAAGTCAAGGCGGCAACGCCGTCAAAATGCCGAAGCGGAACCACCGCCTAATAGCCGTCACCGGAGCCGCCGCTCTCCTCGCTCTCGCCGTCAACCTCGGAATCACCGCCTTCAACTCTCACAGGAACAACAGAAAGAAGAAAGATCTCTCTTCACTACTCTACTCTTTTCATCTTCAGGGCTCGAAGGTTCGAGTTACTCTATCGGCTTCGGAGATTTTGAAATTGGCCGACCGAGTCATTTCCAAGTCAAAAGAGGTCCACGACGCTGTGGCTTCGGTTCCGCTAGATAAGGTTACGTATATGAATGTTATTTCACCTCTAGCTGAATTGGAAGCGCAGCAATTTCCACTTGTACAGTCATTTTTGTTTCCAAAGATGGTGTCTACTAGTGATGATGTTCGAAAAGCAAGCGCCGAGGCCGAGCGGAGAATTGATGCACATGTTCTCACCTGCAGCATGCGTGAGGATGTGTACCGTGTTGTCAAAGCTTTTGCTACGAGAGGAGAGTGGGTGCTGAAGCAAAGCACTATACTCAAGCCTTGTACAATTCATTATAGCTTAGACAAAGCTGAAAATGGTAAATTGAAGGTGACCCTGAAAAGTCATCATGTGGCGGCAGTACTAGAACTTTGTGAGGTCCATCTGCGCCATAAGTTTGCTCGGTTACTTGGCTATTCAAACTATGCTGACTATGCTGTTGATCTTAGAATGGCAAAGACGCCCGCAAAGAGAGGTGAGATCCCAGCTGCTAGAGATCTTGAAGACACTGAAATCCCACTGACGACTTGTTGGCCTGACACGGATGTTGTTAGAAAAGCTATCTGCTCTGCATACTTCCACAATTCTGCTAGATTGAAGGGTGTGGGGGAGTATGTTAATTCCAGAACTGGGATGCCATGCCATCTACATCCGAGCAGTGCTCTCTATGATACATCGCTATTGGAGCATAAGAAGAGACAAAAGGAAGAGAAGACATTTATGGGGCAAGAGATGGAGAATCTGAGAAAGGCTCAAGCAGAGGCAGAGATAGAAAACAAGCAGAGGGAGAGAGAAAAAAGATCCAAGCAGCAGCAGCAAATTTCAATGCCTGGTTTGAGGCCAAAGAAACTTAGCTTGTAA

Protein Analysis

375

Amino Acids

42.19

Weight (kDa)

9.58

Isoelectric Point (pI)

45.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 467
Acc36I ACCTGC 1 cut(s) 467
AccBSI CCGCTC 2 cut(s) 80, 433
AccI GTMKAC 1 cut(s) 392
AclWI GGATC 2 cut(s) 742, 1062
AcoI YGGCCR 1 cut(s) 234
AcsI RAATTY 1 cut(s) 1086
AcuI CTGAAG 2 cut(s) 167, 545
AcyI GRCGYC 1 cut(s) 728
AfaI GTAC 4 cut(s) 363, 482, 553, 630
AfiI CCNNNNNNNGG 1 cut(s) 897
AflIII ACRYGT 1 cut(s) 448
AgsI TTSAA 7 cut(s) 121, 229, 595, 687, 770, 865, 1092
AhdI GACNNNNNGTC 1 cut(s) 9
AhlI ACTAGT 1 cut(s) 395
AjnI CCWGG 1 cut(s) 1096
AluBI AGCT 7 cut(s) 332, 497, 567, 578, 755, 827, 1122
AluI AGCT 7 cut(s) 332, 497, 567, 578, 755, 827, 1122
Alw21I GWGCWC 1 cut(s) 931
Alw26I GTCTC 1 cut(s) 958
AlwI GGATC 2 cut(s) 742, 1062
AoxI GGCC 4 cut(s) 234, 426, 800, 1106
ApeKI GCWGC 6 cut(s) 346, 462, 755, 1075, 1078, 1081
ApoI RAATTY 1 cut(s) 1086
ArsI GACNNNNNNTTYG 2 cut(s) 374, 406
AspLEI GCGC 3 cut(s) 346, 422, 657
AspS9I GGNCC 2 cut(s) 265, 646
AsuHPI GGTGA 6 cut(s) 58, 103, 315, 448, 610, 755
AsuII TTCGAA 1 cut(s) 409
AvaII GGWCC 2 cut(s) 265, 646
BanII GRGCYC 1 cut(s) 191
BbsI GAAGAC 2 cut(s) 777, 986
Bbv12I GWGCWC 1 cut(s) 931
BbvI GCAGC 6 cut(s) 358, 474, 742, 1087, 1090, 1093
BccI CCATC 4 cut(s) 379, 657, 918, 994
BceAI ACGGC 3 cut(s) 11, 47, 80
BciT130I CCWGG 1 cut(s) 1098
BcoDI GTCTC 1 cut(s) 958
BcuI ACTAGT 1 cut(s) 395
BfaI CTAG 6 cut(s) 293, 329, 396, 632, 759, 858
BfmI CTRYAG 1 cut(s) 460
BfoI RGCGCY 1 cut(s) 423
BfuAI ACCTGC 1 cut(s) 467
BglII AGATCT 2 cut(s) 151, 763
BmcAI AGTACT 1 cut(s) 630
Bme1390I CCNGG 1 cut(s) 1098
Bme18I GGWCC 2 cut(s) 265, 646
BmeRI GACNNNNNGTC 1 cut(s) 9
BmgT120I GGNCC 2 cut(s) 265, 646
BmiI GGNNCC 3 cut(s) 47, 73, 288
BmrFI CCNGG 1 cut(s) 1098
BmrI ACTGGG 1 cut(s) 906
BmsI GCATC 2 cut(s) 433, 891
BmuI ACTGGG 1 cut(s) 906
BpiI GAAGAC 2 cut(s) 777, 986
BplI GAGNNNNNCTC 4 cut(s) 913, 945, 1003, 1035
Bpu14I TTCGAA 1 cut(s) 409
BpuEI CTTGAG 2 cut(s) 527, 1005
BsaAI YACGTR 1 cut(s) 306
BsaHI GRCGYC 1 cut(s) 728
BsaJI CCNNGG 2 cut(s) 103, 423
BsaWI WCCGGW 1 cut(s) 68
BsaXI ACNNNNNCTCC 2 cut(s) 504, 534
Bsc4I CCNNNNNNNGG 1 cut(s) 897
Bse1I ACTGG 1 cut(s) 901
BseBI CCWGG 1 cut(s) 1098
BseDI CCNNGG 2 cut(s) 103, 423
BseGI GGATG 4 cut(s) 481, 817, 906, 916
BseLI CCNNNNNNNGG 1 cut(s) 897
BseMII CTCAG 1 cut(s) 1001
BseNI ACTGG 1 cut(s) 901
BseRI GAGGAG 2 cut(s) 74, 525
BseXI GCAGC 6 cut(s) 358, 474, 742, 1087, 1090, 1093
BseYI CCCAGC 1 cut(s) 751
Bsh1285I CGRYCG 1 cut(s) 241
BshFI GGCC 4 cut(s) 236, 428, 802, 1108
BsiEI CGRYCG 1 cut(s) 241
BsiHKAI GWGCWC 1 cut(s) 931
BsiSI CCGG 1 cut(s) 69
BslI CCNNNNNNNGG 1 cut(s) 897
BsmAI GTCTC 1 cut(s) 958
BsnI GGCC 4 cut(s) 236, 428, 802, 1108
Bsp119I TTCGAA 1 cut(s) 409
Bsp1286I GDGCHC 2 cut(s) 191, 931
Bsp1407I TGTACA 2 cut(s) 361, 551
Bsp143I GATC 5 cut(s) 151, 709, 747, 763, 1067
BspANI GGCC 4 cut(s) 236, 428, 802, 1108
BspCNI CTCAG 1 cut(s) 1002
BspLI GGNNCC 3 cut(s) 47, 73, 288
BspMAI CTGCAG 1 cut(s) 464
BspMI ACCTGC 1 cut(s) 467
BspPI GGATC 2 cut(s) 742, 1062
BspT104I TTCGAA 1 cut(s) 409
BsrBI CCGCTC 2 cut(s) 80, 433
BsrGI TGTACA 2 cut(s) 361, 551
BsrI ACTGG 1 cut(s) 901
BssECI CCNNGG 2 cut(s) 103, 423
BssMI GATC 5 cut(s) 151, 709, 747, 763, 1067
BssNI GRCGYC 1 cut(s) 728
Bst2UI CCWGG 1 cut(s) 1098
Bst4CI ACNGT 2 cut(s) 366, 485
Bst6I CTCTTC 3 cut(s) 163, 956, 969
BstACI GRCGYC 1 cut(s) 728
BstAUI TGTACA 2 cut(s) 361, 551
BstBAI YACGTR 1 cut(s) 306
BstBI TTCGAA 1 cut(s) 409
BstC8I GCNNGC 3 cut(s) 418, 467, 732
BstDEI CTNAG 4 cut(s) 568, 713, 1010, 1118
BstEII GGTNACC 1 cut(s) 598
BstF5I GGATG 4 cut(s) 481, 817, 906, 916
BstH2I RGCGCY 1 cut(s) 423
BstHHI GCGC 3 cut(s) 346, 422, 657
BstKTI GATC 5 cut(s) 154, 712, 750, 766, 1070
BstMAI GTCTC 1 cut(s) 958
BstMBI GATC 5 cut(s) 151, 709, 747, 763, 1067
BstMCI CGRYCG 1 cut(s) 241
BstMWI GCNNNNNNNGC 4 cut(s) 86, 701, 952, 1081
BstNI CCWGG 1 cut(s) 1098
BstNSI RCATGY 2 cut(s) 452, 469
BstPI GGTNACC 1 cut(s) 598
BstSCI CCNGG 1 cut(s) 1096
BstSFI CTRYAG 1 cut(s) 460
BstSNI TACGTA 1 cut(s) 306
BstV1I GCAGC 6 cut(s) 358, 474, 742, 1087, 1090, 1093
BstV2I GAAGAC 2 cut(s) 777, 986
BstX2I RGATCY 4 cut(s) 151, 747, 763, 1067
BstYI RGATCY 4 cut(s) 151, 747, 763, 1067
BsuRI GGCC 4 cut(s) 236, 428, 802, 1108
BtgZI GCGATG 1 cut(s) 927
BtsCI GGATG 4 cut(s) 481, 817, 906, 916
BtsI GCAGTG 1 cut(s) 931
BtsIMutI CAGTG 3 cut(s) 774, 785, 931
BveI ACCTGC 1 cut(s) 467
Cac8I GCNNGC 3 cut(s) 418, 467, 732
CfoI GCGC 3 cut(s) 346, 422, 657
Cfr13I GGNCC 2 cut(s) 265, 646
CseI GACGC 2 cut(s) 281, 736
Csp6I GTAC 4 cut(s) 362, 481, 552, 629
CviAII CATG 4 cut(s) 449, 466, 617, 906
CviQI GTAC 4 cut(s) 362, 481, 552, 629
DdeI CTNAG 4 cut(s) 568, 713, 1010, 1118
DpnI GATC 5 cut(s) 153, 711, 749, 765, 1069
DpnII GATC 5 cut(s) 151, 709, 747, 763, 1067
DriI GACNNNNNGTC 1 cut(s) 9
EaeI YGGCCR 1 cut(s) 234
Eam1104I CTCTTC 3 cut(s) 163, 956, 969
Eam1105I GACNNNNNGTC 1 cut(s) 9
EarI CTCTTC 3 cut(s) 163, 956, 969
Eco105I TACGTA 1 cut(s) 306
Eco24I GRGCYC 1 cut(s) 191
Eco47I GGWCC 2 cut(s) 265, 646
Eco57I CTGAAG 2 cut(s) 167, 545
Eco91I GGTNACC 1 cut(s) 598
EcoO65I GGTNACC 1 cut(s) 598
EcoRII CCWGG 1 cut(s) 1096
EcoT38I GRGCYC 1 cut(s) 191
FaeI CATG 4 cut(s) 452, 469, 620, 909
FatI CATG 4 cut(s) 448, 465, 616, 905
FauI CCCGC 1 cut(s) 739
FblI GTMKAC 1 cut(s) 392
FokI GGATG 4 cut(s) 488, 824, 903, 913
FriOI GRGCYC 1 cut(s) 191
FspBI CTAG 6 cut(s) 293, 329, 396, 632, 759, 858
GlaI GCGC 3 cut(s) 345, 421, 656
GsaI CCCAGC 1 cut(s) 755
HaeII RGCGCY 1 cut(s) 423
HaeIII GGCC 4 cut(s) 236, 428, 802, 1108
HapII CCGG 1 cut(s) 69
HgaI GACGC 2 cut(s) 281, 736
HhaI GCGC 3 cut(s) 346, 422, 657
Hin1I GRCGYC 1 cut(s) 728
Hin1II CATG 4 cut(s) 452, 469, 620, 909
Hin6I GCGC 3 cut(s) 344, 420, 655
HinP1I GCGC 3 cut(s) 344, 420, 655
HincII GTYRAC 1 cut(s) 100
HindII GTYRAC 1 cut(s) 100
HindIII AAGCTT 1 cut(s) 495
HinfI GANTC 3 cut(s) 108, 243, 1006
HpaII CCGG 1 cut(s) 69
HphI GGTGA 6 cut(s) 58, 103, 315, 448, 610, 755
Hpy166II GTNNAC 4 cut(s) 100, 268, 393, 481
Hpy188I TCNGA 4 cut(s) 107, 220, 921, 1011
Hpy188III TCNNGA 2 cut(s) 767, 891
Hpy8I GTNNAC 4 cut(s) 100, 268, 393, 481
Hpy99I CGWCG 1 cut(s) 275
HpyAV CCTTC 4 cut(s) 127, 187, 589, 859
HpyCH4III ACNGT 2 cut(s) 366, 485
HpyCH4IV ACGT 1 cut(s) 305
HpyCH4V TGCA 3 cut(s) 446, 462, 839
HpyF10VI GCNNNNNNNGC 4 cut(s) 86, 701, 952, 1081
HpyF3I CTNAG 4 cut(s) 568, 713, 1010, 1118
HpySE526I ACGT 1 cut(s) 305
Hsp92I GRCGYC 1 cut(s) 728
Hsp92II CATG 4 cut(s) 452, 469, 620, 909
HspAI GCGC 3 cut(s) 344, 420, 655
Kzo9I GATC 5 cut(s) 151, 709, 747, 763, 1067
LmnI GCTCC 2 cut(s) 71, 952
Lsp1109I GCAGC 6 cut(s) 358, 474, 742, 1087, 1090, 1093
LweI GCATC 2 cut(s) 433, 891
MaeI CTAG 6 cut(s) 293, 329, 396, 632, 759, 858
MaeII ACGT 1 cut(s) 305
MaeIII GTNAC 5 cut(s) 64, 202, 301, 598, 672
MalI GATC 5 cut(s) 153, 711, 749, 765, 1069
MbiI CCGCTC 2 cut(s) 80, 433
MboI GATC 5 cut(s) 151, 709, 747, 763, 1067
MboII GAAGA 7 cut(s) 150, 157, 173, 782, 973, 986, 991
MflI RGATCY 4 cut(s) 151, 747, 763, 1067
MhlI GDGCHC 2 cut(s) 191, 931
MluCI AATT 9 cut(s) 230, 335, 350, 438, 555, 590, 850, 886, 1086
MlyI GAGTC 1 cut(s) 252
MseI TTAA 1 cut(s) 885
MspA1I CMGCKG 1 cut(s) 755
MspI CCGG 1 cut(s) 69
MspR9I CCNGG 1 cut(s) 1098
MvaI CCWGG 1 cut(s) 1098
MwoI GCNNNNNNNGC 4 cut(s) 86, 701, 952, 1081
NdeII GATC 5 cut(s) 151, 709, 747, 763, 1067
NlaIII CATG 4 cut(s) 452, 469, 620, 909
NlaIV GGNNCC 3 cut(s) 47, 73, 288
NmeAIII GCCGAG 2 cut(s) 448, 454
NmuCI GTSAC 2 cut(s) 64, 598
NspI RCATGY 2 cut(s) 452, 469
NspV TTCGAA 1 cut(s) 409
PaeI GCATGC 1 cut(s) 469
PaqCI CACCTGC 1 cut(s) 467
PciI ACATGT 1 cut(s) 448
PcsI WCGNNNNNNNCGW 1 cut(s) 93
PfeI GAWTC 2 cut(s) 108, 1006
PflFI GACNNNGTC 1 cut(s) 242
PleI GAGTC 1 cut(s) 251
PpsI GAGTC 1 cut(s) 251
Ppu21I YACGTR 1 cut(s) 306
PscI ACATGT 1 cut(s) 448
Psp6I CCWGG 1 cut(s) 1096
PspEI GGTNACC 1 cut(s) 598
PspFI CCCAGC 1 cut(s) 751
PspGI CCWGG 1 cut(s) 1096
PspN4I GGNNCC 3 cut(s) 47, 73, 288
PspPI GGNCC 2 cut(s) 265, 646
PstI CTGCAG 1 cut(s) 464
PsuI RGATCY 4 cut(s) 151, 747, 763, 1067
PsyI GACNNNGTC 1 cut(s) 242
PvuII CAGCTG 1 cut(s) 755
RsaI GTAC 4 cut(s) 363, 482, 553, 630
RsaNI GTAC 4 cut(s) 362, 481, 552, 629
SaqAI TTAA 1 cut(s) 885
Sau3AI GATC 5 cut(s) 151, 709, 747, 763, 1067
Sau96I GGNCC 2 cut(s) 265, 646
ScaI AGTACT 1 cut(s) 630
SchI GAGTC 1 cut(s) 252
ScrFI CCNGG 1 cut(s) 1098
SduI GDGCHC 2 cut(s) 191, 931
SfaNI GCATC 2 cut(s) 433, 891
SfcI CTRYAG 1 cut(s) 460
SfuI TTCGAA 1 cut(s) 409
SinI GGWCC 2 cut(s) 265, 646
SmlI CTYRAG 2 cut(s) 542, 1020
SmoI CTYRAG 2 cut(s) 542, 1020
SnaBI TACGTA 1 cut(s) 306
SpeI ACTAGT 1 cut(s) 395
SphI GCATGC 1 cut(s) 469
Sse9I AATT 9 cut(s) 230, 335, 350, 438, 555, 590, 850, 886, 1086
SspMI CTAG 6 cut(s) 293, 329, 396, 632, 759, 858
StyD4I CCNGG 1 cut(s) 1096
TaaI ACNGT 2 cut(s) 366, 485
TaiI ACGT 1 cut(s) 308
TaqI TCGA 3 cut(s) 191, 199, 409
TaqII GACCGA 1 cut(s) 255
TasI AATT 9 cut(s) 230, 335, 350, 438, 555, 590, 850, 886, 1086
TatI WGTACW 3 cut(s) 361, 551, 628
TauI GCSGC 4 cut(s) 21, 77, 80, 626
TfiI GAWTC 2 cut(s) 108, 1006
Tru1I TTAA 1 cut(s) 885
Tru9I TTAA 1 cut(s) 885
TscAI CASTG 3 cut(s) 781, 792, 931
TseFI GTSAC 2 cut(s) 64, 598
TseI GCWGC 6 cut(s) 346, 462, 755, 1075, 1078, 1081
Tsp45I GTSAC 2 cut(s) 64, 598
TspDTI ATGAA 3 cut(s) 167, 326, 548
TspGWI ACGGA 2 cut(s) 20, 824
TspRI CASTG 3 cut(s) 781, 792, 931
Tth111I GACNNNGTC 1 cut(s) 242
VpaK11BI GGWCC 2 cut(s) 265, 646
XapI RAATTY 1 cut(s) 1086
XceI RCATGY 2 cut(s) 452, 469
XmiI GTMKAC 1 cut(s) 392
XspI CTAG 6 cut(s) 293, 329, 396, 632, 759, 858
ZrmI AGTACT 1 cut(s) 630
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.