Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0001729

Physical Location & Seq

Genomic Coordinates Reverse (-)

62930858 .. 62932221

Gene Structure 1364 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG421900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGTCAAAAGCTGGTGTTTGTTGTCTCCGAGCTCAACAAGAAATTTCAGAAGAAGCTGGTGTGTCAGAGCCCGATTCGAGGATCCCACCCCCACCAGGCAAGTTCTTTTCTATCTCACTATGCCTATTGCGTGAGGATGTGTACCATGTTGTCAAAGCTTTCGCTATGATAGGAGAGTGGGTGAGTGCTGAAGCAAAGCTCTATACTCAAGTCTTGCGTGTGAGAGTCCAAATTGATGAGCTAAGCTTGCGCTATATCCAAAATCTACGTGAGGATTTTTCTTTCCTTGTCTTCACTGAGACTGAGTTGGCTGGGGTACCACAAGAGTTTCTCAAGACTTATACTTTGTTCTATTATGTTGGTTACTTGGAGGAACAAATGATGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005758 GO:0005829 GO:0005886 GO:0006109 GO:0006111 GO:0006508 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009889 GO:0009987 GO:0010675 GO:0010830 GO:0010906 GO:0016020 GO:0016202 GO:0016787 GO:0019222 GO:0019538 GO:0031323 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0033218 GO:0034641 GO:0042277 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043255 GO:0043603 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0048634 GO:0048641 GO:0050789 GO:0050793 GO:0050794 GO:0051147 GO:0051153 GO:0051239 GO:0062012 GO:0065007 GO:0070011 GO:0070012 GO:0070013 GO:0071704 GO:0071944 GO:0080090 GO:0140096 GO:1901564 GO:1901861 GO:1902809 GO:2000026 GO:2001014

KEGG Pathways

Metabolic & Signaling

ko04614 ko05143 map04614 map05143

Pfam Domains

Protein Families

Peptidase_M3

Protein Analysis

129

Amino Acids

14.87

Weight (kDa)

4.79

Isoelectric Point (pI)

49.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001729)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67690
fragaria_vesca	FvH4_4g24570 FvH4_4g24570 FvH4_4g24570 FvH4_4g24570
malus_domestica	MD02G1151800.v1.1 MD13G1110200.v1.1 MD16G1110100.v1.1 MD16G1110200.v1.1
prunus_persica	Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1 Prupe.1G234500_v2.0.a1
pyrus_communis	pycom13g09590 pycom16g09360
rosa_chinensis	RchiOBHm_Chr4g0431491 RchiOBHm_Chr4g0431531 RchiOBHm_Chr4g0444651
rosa_laevigata	RLG00000006910 RLG00000018869 RLG00000036429
rosa_multiflora	Rmu_sc0000543.1_g000041 Rmu_sc0001207.1_g000024
rosa_roxburghii	Rroxscaffold_5G00372940 Rroxscaffold_5G00372960 Rroxscaffold_5G00372990 Rroxscaffold_5G00373020
rosa_rugosa	Rorug04G0250600 Rorug04G0250700
rosa_samantha	Rh2AG013000 Rh2AG278200 Rh4AG306800 Rh4AG307200 Rh4AG307400 Rh4BG314800 Rh4BG315100 Rh4CG330200 Rh4DG310000 Rh4DG310100 Rh4DG421900 Rh5AG518200 Rh5DG435400 Rh6CG219500
rosa_wichuraiana	Rw4G026630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	316
AccB1I	GGYRCC	1 cut(s)	316
AclWI	GGATC	2 cut(s)	76, 89
AcsI	RAATTY	1 cut(s)	42
AcuI	CTGAAG	1 cut(s)	210
AfaI	GTAC	2 cut(s)	143, 318
AfiI	CCNNNNNNNGG	2 cut(s)	78, 95
AjnI	CCWGG	1 cut(s)	94
AluBI	AGCT	7 cut(s)	11, 32, 56, 158, 199, 241, 246
AluI	AGCT	7 cut(s)	11, 32, 56, 158, 199, 241, 246
Alw21I	GWGCWC	1 cut(s)	34
Alw26I	GTCTC	2 cut(s)	29, 293
AlwI	GGATC	2 cut(s)	76, 89
ApoI	RAATTY	1 cut(s)	42
ArsI	GACNNNNNNTTYG	2 cut(s)	328, 360
Asp718I	GGTACC	1 cut(s)	316
AspLEI	GCGC	1 cut(s)	252
AsuHPI	GGTGA	1 cut(s)	193
BamHI	GGATCC	1 cut(s)	81
BanI	GGYRCC	1 cut(s)	316
BanII	GRGCYC	2 cut(s)	34, 72
BbsI	GAAGAC	1 cut(s)	283
Bbv12I	GWGCWC	1 cut(s)	34
BciT130I	CCWGG	1 cut(s)	96
BcoDI	GTCTC	2 cut(s)	29, 293
BlpI	GCTNAGC	1 cut(s)	242
Bme1390I	CCNGG	1 cut(s)	96
BmiI	GGNNCC	2 cut(s)	83, 318
BmrFI	CCNGG	1 cut(s)	96
BmsI	GCATC	1 cut(s)	372
BpiI	GAAGAC	1 cut(s)	283
Bpu1102I	GCTNAGC	1 cut(s)	242
BpuEI	CTTGAG	2 cut(s)	192, 317
BsaAI	YACGTR	1 cut(s)	269
BsaXI	ACNNNNNCTCC	2 cut(s)	165, 195
Bsc4I	CCNNNNNNNGG	2 cut(s)	78, 95
BseBI	CCWGG	1 cut(s)	96
BseGI	GGATG	1 cut(s)	142
BseLI	CCNNNNNNNGG	2 cut(s)	78, 95
BseMII	CTCAG	2 cut(s)	288, 294
BseYI	CCCAGC	1 cut(s)	311
BshNI	GGYRCC	1 cut(s)	316
BsiHKAI	GWGCWC	1 cut(s)	34
BslI	CCNNNNNNNGG	2 cut(s)	78, 95
BsmAI	GTCTC	2 cut(s)	29, 293
Bsp1286I	GDGCHC	2 cut(s)	34, 72
Bsp143I	GATC	1 cut(s)	81
Bsp1720I	GCTNAGC	1 cut(s)	242
BspCNI	CTCAG	2 cut(s)	289, 295
BspLI	GGNNCC	2 cut(s)	83, 318
BspPI	GGATC	2 cut(s)	76, 89
BspT107I	GGYRCC	1 cut(s)	316
BssMI	GATC	1 cut(s)	81
Bst2UI	CCWGG	1 cut(s)	96
BstBAI	YACGTR	1 cut(s)	269
BstC8I	GCNNGC	1 cut(s)	248
BstDEI	CTNAG	3 cut(s)	242, 297, 303
BstF5I	GGATG	1 cut(s)	142
BstHHI	GCGC	1 cut(s)	252
BstKTI	GATC	1 cut(s)	84
BstMAI	GTCTC	2 cut(s)	29, 293
BstMBI	GATC	1 cut(s)	81
BstMWI	GCNNNNNNNGC	1 cut(s)	247
BstNI	CCWGG	1 cut(s)	96
BstSCI	CCNGG	1 cut(s)	94
BstV2I	GAAGAC	1 cut(s)	283
BstX2I	RGATCY	1 cut(s)	81
BstYI	RGATCY	1 cut(s)	81
BtsCI	GGATG	1 cut(s)	142
BtsIMutI	CAGTG	1 cut(s)	294
Cac8I	GCNNGC	1 cut(s)	248
CfoI	GCGC	1 cut(s)	252
Csp6I	GTAC	2 cut(s)	142, 317
CviAII	CATG	1 cut(s)	146
CviJI	RGCY	9 cut(s)	11, 32, 56, 70, 158, 199, 241, 246, 311
CviKI_1	RGCY	9 cut(s)	11, 32, 56, 70, 158, 199, 241, 246, 311
CviQI	GTAC	2 cut(s)	142, 317
DdeI	CTNAG	3 cut(s)	242, 297, 303
DpnI	GATC	1 cut(s)	83
DpnII	GATC	1 cut(s)	81
Ecl136II	GAGCTC	1 cut(s)	32
Eco24I	GRGCYC	2 cut(s)	34, 72
Eco53kI	GAGCTC	1 cut(s)	32
Eco57I	CTGAAG	1 cut(s)	210
EcoICRI	GAGCTC	1 cut(s)	32
EcoRII	CCWGG	1 cut(s)	94
EcoT38I	GRGCYC	2 cut(s)	34, 72
FaeI	CATG	1 cut(s)	149
FaiI	YATR	7 cut(s)	121, 147, 167, 204, 255, 342, 357
FatI	CATG	1 cut(s)	145
FokI	GGATG	1 cut(s)	149
FriOI	GRGCYC	2 cut(s)	34, 72
GlaI	GCGC	1 cut(s)	251
GsaI	CCCAGC	1 cut(s)	315
HhaI	GCGC	1 cut(s)	252
Hin1II	CATG	1 cut(s)	149
Hin6I	GCGC	1 cut(s)	250
HinP1I	GCGC	1 cut(s)	250
HindIII	AAGCTT	2 cut(s)	156, 244
HinfI	GANTC	2 cut(s)	74, 225
HphI	GGTGA	1 cut(s)	193
Hpy166II	GTNNAC	1 cut(s)	142
Hpy188I	TCNGA	3 cut(s)	29, 49, 67
Hpy188III	TCNNGA	1 cut(s)	334
Hpy8I	GTNNAC	1 cut(s)	142
HpyCH4IV	ACGT	1 cut(s)	268
HpyCH4V	TGCA	1 cut(s)	385
HpyF10VI	GCNNNNNNNGC	1 cut(s)	247
HpyF3I	CTNAG	3 cut(s)	242, 297, 303
HpySE526I	ACGT	1 cut(s)	268
Hsp92II	CATG	1 cut(s)	149
HspAI	GCGC	1 cut(s)	250
KpnI	GGTACC	1 cut(s)	320
Kzo9I	GATC	1 cut(s)	81
LpnPI	CCDG	4 cut(s)	42, 81, 108, 297
LweI	GCATC	1 cut(s)	372
MaeII	ACGT	1 cut(s)	268
MaeIII	GTNAC	1 cut(s)	362
MalI	GATC	1 cut(s)	83
MboI	GATC	1 cut(s)	81
MboII	GAAGA	2 cut(s)	62, 283
MflI	RGATCY	1 cut(s)	81
MhlI	GDGCHC	2 cut(s)	34, 72
MluCI	AATT	2 cut(s)	42, 231
MlyI	GAGTC	1 cut(s)	234
MnlI	CCTC	4 cut(s)	72, 127, 265, 364
MspR9I	CCNGG	1 cut(s)	96
MvaI	CCWGG	1 cut(s)	96
MwoI	GCNNNNNNNGC	1 cut(s)	247
NdeII	GATC	1 cut(s)	81
NlaIII	CATG	1 cut(s)	149
NlaIV	GGNNCC	2 cut(s)	83, 318
PfeI	GAWTC	1 cut(s)	74
PleI	GAGTC	1 cut(s)	233
PpsI	GAGTC	1 cut(s)	233
Ppu21I	YACGTR	1 cut(s)	269
Psp124BI	GAGCTC	1 cut(s)	34
Psp6I	CCWGG	1 cut(s)	94
PspFI	CCCAGC	1 cut(s)	311
PspGI	CCWGG	1 cut(s)	94
PspN4I	GGNNCC	2 cut(s)	83, 318
PsuI	RGATCY	1 cut(s)	81
RsaI	GTAC	2 cut(s)	143, 318
RsaNI	GTAC	2 cut(s)	142, 317
SacI	GAGCTC	1 cut(s)	34
Sau3AI	GATC	1 cut(s)	81
SchI	GAGTC	1 cut(s)	234
ScrFI	CCNGG	1 cut(s)	96
SduI	GDGCHC	2 cut(s)	34, 72
SetI	ASST	8 cut(s)	13, 34, 58, 160, 201, 243, 248, 271
SfaNI	GCATC	1 cut(s)	372
SmlI	CTYRAG	2 cut(s)	207, 332
SmoI	CTYRAG	2 cut(s)	207, 332
Sse9I	AATT	2 cut(s)	42, 231
SstI	GAGCTC	1 cut(s)	34
StyD4I	CCNGG	1 cut(s)	94
TaiI	ACGT	1 cut(s)	271
TaqI	TCGA	1 cut(s)	77
TasI	AATT	2 cut(s)	42, 231
TfiI	GAWTC	1 cut(s)	74
TscAI	CASTG	1 cut(s)	301
TspRI	CASTG	1 cut(s)	301
XapI	RAATTY	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.