AT1G72880

Survival protein SurE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0002356
Physical Location & Seq
Reverse (-)
27423385 .. 27426215
2831 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G72880.1

Sequence Viewer

Length: 1158 bp
ATGACCTCGAAGAACAATGGTTTGTCAGCTGCGCTCGTTTCGAATCTCCAAGATGTGCTTTCGAAGAGAAAAGTAGGAAATGAGGAAAAAGTTGGAAGCGATGGATCGGCGGAGGAGGCTCCGTCTACATCTGATTCCGTTGATGTTGCGTCGGTGGAGGAAGAGATCGATGATTCTAGACCTATTGTTTTAGTTACGAATGGTGATGGGATTGATTCGCCAGGGCTTGTTTCTCTCGTTGAGGCTTTGGTTCTCGAAGGGCTTTACAATGTTCATGTTTGTGCTCCTCAAACGGACAAATCAGCCTCTGCTCATTCTACTACTCCAGGAGAAACAATCGCTGTAAGCTCTGTAAAACTCAAAGGTGCCACAGCCTTTGAAGTTTCAGGGACTCCTGTGGACTGCATCTCATTAGGATTATCTGGAGCGCTTTTTGCTTGGTCAAAACCTATACTGGTAATTAGTGGAATTAATCAGGGATCAAGCTGTGGCCATCAAATGTTCTATTCAGGTGCAGTTGCTGGAGGCAGGGAGGCTTTGATTTCTGGGGTACCCTCTTTGTCAATATCGTTGAATTGGAAGAAAAATGAAAGCCAAGAAAGTCACTTTAAGGATGCTGTTGGTGTCTGCTTACCTTTGATAAACGCAACTATCAGAGACATTGCGAAAGGAGTTTTCCCTAAAGACTGCTCTCTCAACATAGAAATTCCAACATCACCCTCATCAAACAAGGGTTTCAAGGTAACAAAGCAAAGCATGTGGAGGCAGTATCCTAGTTGGCAAGCTGTTTCAGCTAATCGTCACCCTGGTGCTGGGAATTTCATGTCCAACCAACAAAGTTTAGGGGCTCAGCTTGCCCAGCTTGGCAGGGATGCTTCAGCGGCTGGGGCGGCTCGTCGTTTTACCACTCAGAAGAAGAGTATTGTAGAAATTGAATCAGTTGGTGTTGCTGGTAAAACTGATACCCGTGTTAAGAAATTCTTTCGTCTAGAGTTTCTTGCTAAAGAACAAGAACACACAGATGAAGATTTGGATGTCAAGGCTCTAGAAGATGGTTTCGTTTCCGTGACTCCATTTTCTCTCCTTCCAAAAACGGATTCAGAAACTCAAGCCGCAGCATCAGAATGGATCTCCAAAGCCCTTAACTCTGATCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 ko00760 ko01100 ko01110 map00230 map00240 map00760 map01100 map01110
Pfam Domains
Protein Families
SurE

Protein Analysis

385

Amino Acids

40.67

Weight (kDa)

5.3

Isoelectric Point (pI)

36.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SurE PF01975 63 - 255 7.1e-47 Survival protein SurE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 550
AccB1I GGYRCC 2 cut(s) 365, 550
AccI GTMKAC 1 cut(s) 125
AciI CCGC 4 cut(s) 110, 881, 890, 1113
AclWI GGATC 3 cut(s) 112, 487, 1136
AcoI YGGCCR 1 cut(s) 490
AcsI RAATTY 3 cut(s) 705, 817, 977
AcuI CTGAAG 1 cut(s) 861
AfaI GTAC 1 cut(s) 552
AfeI AGCGCT 1 cut(s) 429
AfiI CCNNNNNNNGG 1 cut(s) 812
AgsI TTSAA 4 cut(s) 380, 574, 739, 935
AjnI CCWGG 3 cut(s) 220, 325, 805
AjuI GAANNNNNNNTTGG 2 cut(s) 1081, 1113
AleI CACNNNNGTG 1 cut(s) 807
AluBI AGCT 7 cut(s) 29, 348, 486, 785, 794, 853, 862
AluI AGCT 7 cut(s) 29, 348, 486, 785, 794, 853, 862
Alw21I GWGCWC 1 cut(s) 286
Alw26I GTCTC 1 cut(s) 651
AlwI GGATC 3 cut(s) 112, 487, 1136
AlwNI CAGNNNCTG 3 cut(s) 308, 521, 884
Aor51HI AGCGCT 1 cut(s) 429
AoxI GGCC 1 cut(s) 490
ApeKI GCWGC 2 cut(s) 29, 1115
ApoI RAATTY 3 cut(s) 705, 817, 977
AseI ATTAAT 1 cut(s) 471
Asp718I GGTACC 1 cut(s) 550
AspLEI GCGC 2 cut(s) 34, 430
AsuHPI GGTGA 3 cut(s) 215, 708, 794
AsuII TTCGAA 2 cut(s) 41, 62
BaeI ACNNNNGTAYC 2 cut(s) 954, 987
BalI TGGCCA 1 cut(s) 492
BanI GGYRCC 2 cut(s) 365, 550
BanII GRGCYC 1 cut(s) 850
Bbv12I GWGCWC 1 cut(s) 286
BbvI GCAGC 2 cut(s) 16, 1127
BccI CCATC 4 cut(s) 95, 200, 501, 1046
BciT130I CCWGG 3 cut(s) 222, 327, 807
BciVI GTATCC 1 cut(s) 780
BclI TGATCA 1 cut(s) 1150
BcoDI GTCTC 1 cut(s) 651
BfaI CTAG 4 cut(s) 177, 774, 989, 1046
BfoI RGCGCY 1 cut(s) 431
BfuI GTATCC 1 cut(s) 780
BisI GCNGC 5 cut(s) 30, 882, 891, 1113, 1116
BlpI GCTNAGC 1 cut(s) 849
BlsI GCNGC 5 cut(s) 31, 883, 892, 1114, 1117
Bme1390I CCNGG 3 cut(s) 222, 327, 807
BmiI GGNNCC 3 cut(s) 120, 367, 552
BmrFI CCNGG 3 cut(s) 222, 327, 807
BmsI GCATC 4 cut(s) 414, 604, 862, 1127
BpmI CTGGAG 3 cut(s) 309, 444, 543
Bpu1102I GCTNAGC 1 cut(s) 849
Bpu14I TTCGAA 2 cut(s) 41, 62
BpuEI CTTGAG 1 cut(s) 1092
Bsa29I ATCGAT 1 cut(s) 168
BsaJI CCNNGG 2 cut(s) 221, 805
BsaXI ACNNNNNCTCC 2 cut(s) 107, 137
Bsc4I CCNNNNNNNGG 1 cut(s) 812
Bse1I ACTGG 1 cut(s) 459
Bse3DI GCAATG 1 cut(s) 660
BseBI CCWGG 3 cut(s) 222, 327, 807
BseCI ATCGAT 1 cut(s) 168
BseDI CCNNGG 2 cut(s) 221, 805
BseGI GGATG 3 cut(s) 619, 877, 1039
BseLI CCNNNNNNNGG 1 cut(s) 812
BseMI GCAATG 1 cut(s) 660
BseMII CTCAG 2 cut(s) 863, 923
BseNI ACTGG 1 cut(s) 459
BseRI GAGGAG 2 cut(s) 128, 276
BseXI GCAGC 2 cut(s) 16, 1127
BseYI CCCAGC 3 cut(s) 812, 858, 884
BsgI GTGCAG 1 cut(s) 534
BshFI GGCC 1 cut(s) 492
BshNI GGYRCC 2 cut(s) 365, 550
BshVI ATCGAT 1 cut(s) 168
BsiHKAI GWGCWC 1 cut(s) 286
BslFI GGGAC 1 cut(s) 403
BslI CCNNNNNNNGG 1 cut(s) 812
BsmAI GTCTC 1 cut(s) 651
BsmFI GGGAC 1 cut(s) 403
BsnI GGCC 1 cut(s) 492
Bsp119I TTCGAA 2 cut(s) 41, 62
Bsp1286I GDGCHC 2 cut(s) 286, 850
Bsp143I GATC 5 cut(s) 104, 165, 479, 1128, 1150
Bsp1720I GCTNAGC 1 cut(s) 849
BspACI CCGC 4 cut(s) 110, 881, 890, 1113
BspANI GGCC 1 cut(s) 492
BspCNI CTCAG 2 cut(s) 862, 922
BspDI ATCGAT 1 cut(s) 168
BspLI GGNNCC 3 cut(s) 120, 367, 552
BspPI GGATC 3 cut(s) 112, 487, 1136
BspT104I TTCGAA 2 cut(s) 41, 62
BspT107I GGYRCC 2 cut(s) 365, 550
BsrDI GCAATG 1 cut(s) 660
BsrI ACTGG 1 cut(s) 459
BssECI CCNNGG 2 cut(s) 221, 805
BssMI GATC 5 cut(s) 104, 165, 479, 1128, 1150
Bst2UI CCWGG 3 cut(s) 222, 327, 807
Bst6I CTCTTC 3 cut(s) 59, 156, 911
BstBI TTCGAA 2 cut(s) 41, 62
BstC8I GCNNGC 2 cut(s) 783, 855
BstDEI CTNAG 2 cut(s) 849, 909
BstF5I GGATG 3 cut(s) 619, 877, 1039
BstH2I RGCGCY 1 cut(s) 431
BstHHI GCGC 2 cut(s) 34, 430
BstKTI GATC 5 cut(s) 107, 168, 482, 1131, 1153
BstMAI GTCTC 1 cut(s) 651
BstMBI GATC 5 cut(s) 104, 165, 479, 1128, 1150
BstMWI GCNNNNNNNGC 8 cut(s) 116, 434, 791, 854, 859, 881, 887, 890
BstNI CCWGG 3 cut(s) 222, 327, 807
BstNSI RCATGY 1 cut(s) 760
BstSCI CCNGG 3 cut(s) 220, 325, 805
BstV1I GCAGC 2 cut(s) 16, 1127
BstX2I RGATCY 1 cut(s) 1128
BstYI RGATCY 1 cut(s) 1128
Bsu15I ATCGAT 1 cut(s) 168
BsuI GTATCC 1 cut(s) 780
BsuRI GGCC 1 cut(s) 492
BsuTUI ATCGAT 1 cut(s) 168
BtgZI GCGATG 1 cut(s) 114
BtsCI GGATG 3 cut(s) 619, 877, 1039
Cac8I GCNNGC 2 cut(s) 783, 855
CaiI CAGNNNCTG 3 cut(s) 308, 521, 884
CfoI GCGC 2 cut(s) 34, 430
ClaI ATCGAT 1 cut(s) 168
CseI GACGC 1 cut(s) 138
Csp6I GTAC 1 cut(s) 551
CspCI CAANNNNNGTGG 4 cut(s) 358, 393, 740, 775
CviAII CATG 3 cut(s) 275, 757, 823
CviQI GTAC 1 cut(s) 551
DdeI CTNAG 2 cut(s) 849, 909
DpnI GATC 5 cut(s) 106, 167, 481, 1130, 1152
DpnII GATC 5 cut(s) 104, 165, 479, 1128, 1150
EaeI YGGCCR 1 cut(s) 490
Eam1104I CTCTTC 3 cut(s) 59, 156, 911
EarI CTCTTC 3 cut(s) 59, 156, 911
EciI GGCGGA 1 cut(s) 125
Eco24I GRGCYC 1 cut(s) 850
Eco47III AGCGCT 1 cut(s) 429
Eco57I CTGAAG 1 cut(s) 861
EcoRII CCWGG 3 cut(s) 220, 325, 805
EcoT38I GRGCYC 1 cut(s) 850
FaeI CATG 3 cut(s) 278, 760, 826
FaiI YATR 5 cut(s) 276, 452, 701, 758, 824
FalI AAGNNNNNCTT 4 cut(s) 42, 74, 965, 997
FaqI GGGAC 1 cut(s) 403
FatI CATG 3 cut(s) 274, 756, 822
FbaI TGATCA 1 cut(s) 1150
FblI GTMKAC 1 cut(s) 125
Fnu4HI GCNGC 5 cut(s) 30, 882, 891, 1113, 1116
FokI GGATG 3 cut(s) 626, 884, 1046
FriOI GRGCYC 1 cut(s) 850
Fsp4HI GCNGC 5 cut(s) 30, 882, 891, 1113, 1116
FspBI CTAG 4 cut(s) 177, 774, 989, 1046
GlaI GCGC 2 cut(s) 33, 429
GluI GCNGC 5 cut(s) 30, 882, 891, 1113, 1116
GsaI CCCAGC 3 cut(s) 816, 862, 888
GsuI CTGGAG 3 cut(s) 309, 444, 543
HaeII RGCGCY 1 cut(s) 431
HaeIII GGCC 1 cut(s) 492
HgaI GACGC 1 cut(s) 138
HhaI GCGC 2 cut(s) 34, 430
Hin1II CATG 3 cut(s) 278, 760, 826
Hin6I GCGC 2 cut(s) 32, 428
HinP1I GCGC 2 cut(s) 32, 428
HinfI GANTC 8 cut(s) 43, 134, 173, 215, 391, 935, 1069, 1097
HphI GGTGA 3 cut(s) 215, 708, 794
Hpy166II GTNNAC 2 cut(s) 126, 400
Hpy188I TCNGA 6 cut(s) 133, 656, 912, 1102, 1123, 1150
Hpy188III TCNNGA 5 cut(s) 177, 254, 423, 989, 1046
Hpy8I GTNNAC 2 cut(s) 126, 400
Hpy99I CGWCG 2 cut(s) 154, 900
HpyAV CCTTC 2 cut(s) 251, 1094
HpyCH4V TGCA 2 cut(s) 405, 515
HpyF10VI GCNNNNNNNGC 8 cut(s) 116, 434, 791, 854, 859, 881, 887, 890
HpyF3I CTNAG 2 cut(s) 849, 909
Hsp92II CATG 3 cut(s) 278, 760, 826
HspAI GCGC 2 cut(s) 32, 428
KpnI GGTACC 1 cut(s) 554
Ksp22I TGATCA 1 cut(s) 1150
Kzo9I GATC 5 cut(s) 104, 165, 479, 1128, 1150
LmnI GCTCC 3 cut(s) 124, 289, 425
Lsp1109I GCAGC 2 cut(s) 16, 1127
LweI GCATC 4 cut(s) 414, 604, 862, 1127
MaeI CTAG 4 cut(s) 177, 774, 989, 1046
MaeIII GTNAC 5 cut(s) 193, 602, 742, 800, 1066
MalI GATC 5 cut(s) 106, 167, 481, 1130, 1152
MboI GATC 5 cut(s) 104, 165, 479, 1128, 1150
MboII GAAGA 8 cut(s) 22, 76, 173, 592, 925, 928, 1037, 1061
MflI RGATCY 1 cut(s) 1128
MhlI GDGCHC 2 cut(s) 286, 850
MlsI TGGCCA 1 cut(s) 492
MluCI AATT 7 cut(s) 459, 468, 574, 705, 817, 930, 977
MluNI TGGCCA 1 cut(s) 492
MlyI GAGTC 2 cut(s) 385, 1063
MmeI TCCRAC 3 cut(s) 73, 734, 852
Mox20I TGGCCA 1 cut(s) 492
MscI TGGCCA 1 cut(s) 492
MseI TTAA 4 cut(s) 471, 609, 972, 1143
MslI CAYNNNNRTG 4 cut(s) 279, 807, 1020, 1123
Msp20I TGGCCA 1 cut(s) 492
MspA1I CMGCKG 2 cut(s) 29, 881
MspR9I CCNGG 3 cut(s) 222, 327, 807
MvaI CCWGG 3 cut(s) 222, 327, 807
MwoI GCNNNNNNNGC 8 cut(s) 116, 434, 791, 854, 859, 881, 887, 890
NdeII GATC 5 cut(s) 104, 165, 479, 1128, 1150
NlaIII CATG 3 cut(s) 278, 760, 826
NlaIV GGNNCC 3 cut(s) 120, 367, 552
NmuCI GTSAC 3 cut(s) 602, 800, 1066
NspI RCATGY 1 cut(s) 760
NspV TTCGAA 2 cut(s) 41, 62
OliI CACNNNNGTG 1 cut(s) 807
PfeI GAWTC 6 cut(s) 43, 134, 173, 215, 935, 1097
PfoI TCCNGGA 1 cut(s) 325
PkrI GCNGC 5 cut(s) 31, 883, 892, 1114, 1117
PleI GAGTC 2 cut(s) 385, 1063
PpsI GAGTC 2 cut(s) 385, 1063
PshBI ATTAAT 1 cut(s) 471
Psp6I CCWGG 3 cut(s) 220, 325, 805
PspFI CCCAGC 3 cut(s) 812, 858, 884
PspGI CCWGG 3 cut(s) 220, 325, 805
PspN4I GGNNCC 3 cut(s) 120, 367, 552
PstNI CAGNNNCTG 3 cut(s) 308, 521, 884
PsuI RGATCY 1 cut(s) 1128
PvuII CAGCTG 1 cut(s) 29
RsaI GTAC 1 cut(s) 552
RsaNI GTAC 1 cut(s) 551
RseI CAYNNNNRTG 4 cut(s) 279, 807, 1020, 1123
SaqAI TTAA 4 cut(s) 471, 609, 972, 1143
SatI GCNGC 5 cut(s) 30, 882, 891, 1113, 1116
Sau3AI GATC 5 cut(s) 104, 165, 479, 1128, 1150
SchI GAGTC 2 cut(s) 385, 1063
ScrFI CCNGG 3 cut(s) 222, 327, 807
SduI GDGCHC 2 cut(s) 286, 850
SfaNI GCATC 4 cut(s) 414, 604, 862, 1127
SfuI TTCGAA 2 cut(s) 41, 62
SmiMI CAYNNNNRTG 4 cut(s) 279, 807, 1020, 1123
SmlI CTYRAG 1 cut(s) 1107
SmoI CTYRAG 1 cut(s) 1107
Sse9I AATT 7 cut(s) 459, 468, 574, 705, 817, 930, 977
SsiI CCGC 4 cut(s) 110, 881, 890, 1113
SspMI CTAG 4 cut(s) 177, 774, 989, 1046
StyD4I CCNGG 3 cut(s) 220, 325, 805
TaqI TCGA 5 cut(s) 8, 41, 62, 168, 255
TasI AATT 7 cut(s) 459, 468, 574, 705, 817, 930, 977
TauI GCSGC 3 cut(s) 884, 893, 1115
TfiI GAWTC 6 cut(s) 43, 134, 173, 215, 935, 1097
Tru1I TTAA 4 cut(s) 471, 609, 972, 1143
Tru9I TTAA 4 cut(s) 471, 609, 972, 1143
TseFI GTSAC 3 cut(s) 602, 800, 1066
TseI GCWGC 2 cut(s) 29, 1115
Tsp45I GTSAC 3 cut(s) 602, 800, 1066
TspDTI ATGAA 4 cut(s) 263, 603, 811, 1038
TspGWI ACGGA 5 cut(s) 111, 127, 308, 1054, 1109
VspI ATTAAT 1 cut(s) 471
XapI RAATTY 3 cut(s) 705, 817, 977
XbaI TCTAGA 3 cut(s) 176, 988, 1045
XceI RCATGY 1 cut(s) 760
XmiI GTMKAC 1 cut(s) 125
XspI CTAG 4 cut(s) 177, 774, 989, 1046
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.