Rh1DG156900

Survival protein SurE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0002356
Physical Location & Seq
Forward (+)
32593433 .. 32605127
11695 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG156900.1

Sequence Viewer

Length: 453 bp
ATGGTTTCAGGTAATCGATCAGTGGAATCAACCGGGGATCAAACTGTGGCCATCACATGTAAGTTGTTGTACTCAGGTGTTGTTGCTGGAGCTAGGGAGGCACTAATAAGTGGAGTGCCCTCTTTATCAATATCACTAAATTGGAGGAAGGATGAAAGTCAAGAAAATGATTTCAAAGATGCAGTTGTTGTTTGTTTACCTCTAATAAATGCAGCTATCAGGGATATTGAGAAGGGGCAATTCCCCAAGAGTTGCTTTCTAAATATAGAGATTCCTTCATCTCCTTTATCAAACAAGAAGGCATATACGCAATTTATAAACAATTTCCCTCTTTGCATTCAATCTAAAGAAGAATCTAAAGGATTGGACTTTCACCTCATTCAAATGCACATTACGGACAACAACAAACCAAAGAATGCATTTTTTACATTTGATCATAAAGCTTTGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 ko00760 ko01100 ko01110 map00230 map00240 map00760 map01100 map01110
Pfam Domains
Protein Families
SurE

Protein Analysis

150

Amino Acids

16.62

Weight (kDa)

6.29

Isoelectric Point (pI)

53.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SurE PF01975 20 - 103 8e-12 Survival protein SurE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 317
AclWI GGATC 1 cut(s) 45
AcoI YGGCCR 1 cut(s) 48
AfaI GTAC 1 cut(s) 71
AflIII ACRYGT 1 cut(s) 56
AgsI TTSAA 3 cut(s) 175, 341, 383
AluBI AGCT 3 cut(s) 92, 215, 443
AluI AGCT 3 cut(s) 92, 215, 443
AlwI GGATC 1 cut(s) 45
AoxI GGCC 1 cut(s) 48
ApeKI GCWGC 1 cut(s) 212
AsuC2I CCSGG 1 cut(s) 34
AsuHPI GGTGA 1 cut(s) 365
BaeGI GKGCMC 1 cut(s) 120
BalI TGGCCA 1 cut(s) 50
BbvI GCAGC 1 cut(s) 224
BccI CCATC 1 cut(s) 59
BclI TGATCA 1 cut(s) 433
BcnI CCSGG 1 cut(s) 34
BfaI CTAG 1 cut(s) 93
BisI GCNGC 1 cut(s) 213
BlsI GCNGC 1 cut(s) 214
Bme1390I CCNGG 1 cut(s) 34
BmrFI CCNGG 1 cut(s) 34
BmsI GCATC 1 cut(s) 169
BpmI CTGGAG 1 cut(s) 108
BpuMI CCSGG 1 cut(s) 34
Bsa29I ATCGAT 1 cut(s) 16
BsaJI CCNNGG 1 cut(s) 33
BseCI ATCGAT 1 cut(s) 16
BseDI CCNNGG 1 cut(s) 33
BseGI GGATG 1 cut(s) 157
BseMII CTCAG 1 cut(s) 87
BseSI GKGCMC 1 cut(s) 120
BseXI GCAGC 1 cut(s) 224
BshFI GGCC 1 cut(s) 50
BshVI ATCGAT 1 cut(s) 16
BsiSI CCGG 1 cut(s) 33
BsmI GAATGC 2 cut(s) 336, 421
BsnI GGCC 1 cut(s) 50
Bsp1286I GDGCHC 1 cut(s) 120
Bsp143I GATC 3 cut(s) 17, 37, 433
BspANI GGCC 1 cut(s) 50
BspCNI CTCAG 1 cut(s) 86
BspDI ATCGAT 1 cut(s) 16
BspPI GGATC 1 cut(s) 45
BssECI CCNNGG 1 cut(s) 33
BssMI GATC 3 cut(s) 17, 37, 433
Bst4CI ACNGT 1 cut(s) 46
BstDEI CTNAG 1 cut(s) 73
BstF5I GGATG 1 cut(s) 157
BstKTI GATC 3 cut(s) 20, 40, 436
BstMBI GATC 3 cut(s) 17, 37, 433
BstMWI GCNNNNNNNGC 1 cut(s) 98
BstNSI RCATGY 1 cut(s) 60
BstSCI CCNGG 1 cut(s) 32
BstSLI GKGCMC 1 cut(s) 120
BstV1I GCAGC 1 cut(s) 224
Bsu15I ATCGAT 1 cut(s) 16
BsuRI GGCC 1 cut(s) 50
BsuTUI ATCGAT 1 cut(s) 16
BtsCI GGATG 1 cut(s) 157
BtsIMutI CAGTG 1 cut(s) 27
ClaI ATCGAT 1 cut(s) 16
Csp6I GTAC 1 cut(s) 70
CviAII CATG 1 cut(s) 57
CviJI RGCY 4 cut(s) 50, 92, 215, 443
CviKI_1 RGCY 4 cut(s) 50, 92, 215, 443
CviQI GTAC 1 cut(s) 70
DdeI CTNAG 1 cut(s) 73
DpnI GATC 3 cut(s) 19, 39, 435
DpnII GATC 3 cut(s) 17, 37, 433
EaeI YGGCCR 1 cut(s) 48
EcoT22I ATGCAT 1 cut(s) 421
FaeI CATG 1 cut(s) 60
FaiI YATR 6 cut(s) 58, 266, 304, 306, 317, 438
FalI AAGNNNNNCTT 2 cut(s) 239, 271
FatI CATG 1 cut(s) 56
FbaI TGATCA 1 cut(s) 433
Fnu4HI GCNGC 1 cut(s) 213
FokI GGATG 1 cut(s) 164
Fsp4HI GCNGC 1 cut(s) 213
FspBI CTAG 1 cut(s) 93
GluI GCNGC 1 cut(s) 213
GsuI CTGGAG 1 cut(s) 108
HaeIII GGCC 1 cut(s) 50
HapII CCGG 1 cut(s) 33
Hin1II CATG 1 cut(s) 60
HindIII AAGCTT 1 cut(s) 441
HinfI GANTC 3 cut(s) 26, 271, 353
HpaII CCGG 1 cut(s) 33
HphI GGTGA 1 cut(s) 365
Hpy166II GTNNAC 1 cut(s) 197
Hpy188III TCNNGA 1 cut(s) 161
Hpy8I GTNNAC 1 cut(s) 197
HpyAV CCTTC 4 cut(s) 142, 226, 285, 292
HpyCH4III ACNGT 1 cut(s) 46
HpyCH4V TGCA 5 cut(s) 182, 212, 336, 388, 419
HpyF10VI GCNNNNNNNGC 1 cut(s) 98
HpyF3I CTNAG 1 cut(s) 73
Hsp92II CATG 1 cut(s) 60
Ksp22I TGATCA 1 cut(s) 433
Kzo9I GATC 3 cut(s) 17, 37, 433
LmnI GCTCC 1 cut(s) 89
LpnPI CCDG 4 cut(s) 46, 60, 72, 205
Lsp1109I GCAGC 1 cut(s) 224
LweI GCATC 1 cut(s) 169
MaeI CTAG 1 cut(s) 93
MalI GATC 3 cut(s) 19, 39, 435
MboI GATC 3 cut(s) 17, 37, 433
MboII GAAGA 1 cut(s) 362
MhlI GDGCHC 1 cut(s) 120
MlsI TGGCCA 1 cut(s) 50
MluCI AATT 4 cut(s) 139, 239, 311, 322
MluNI TGGCCA 1 cut(s) 50
MnlI CCTC 6 cut(s) 91, 130, 138, 210, 339, 386
Mox20I TGGCCA 1 cut(s) 50
Mph1103I ATGCAT 1 cut(s) 421
MscI TGGCCA 1 cut(s) 50
MseI TTAA 1 cut(s) 451
MslI CAYNNNNRTG 1 cut(s) 383
Msp20I TGGCCA 1 cut(s) 50
MspI CCGG 1 cut(s) 33
MspR9I CCNGG 1 cut(s) 34
Mva1269I GAATGC 2 cut(s) 336, 421
MwoI GCNNNNNNNGC 1 cut(s) 98
NciI CCSGG 1 cut(s) 34
NdeII GATC 3 cut(s) 17, 37, 433
NlaIII CATG 1 cut(s) 60
NsiI ATGCAT 1 cut(s) 421
NspI RCATGY 1 cut(s) 60
PciI ACATGT 1 cut(s) 56
PctI GAATGC 2 cut(s) 336, 421
PfeI GAWTC 3 cut(s) 26, 271, 353
PkrI GCNGC 1 cut(s) 214
PscI ACATGT 1 cut(s) 56
PsiI TTATAA 1 cut(s) 317
RsaI GTAC 1 cut(s) 71
RsaNI GTAC 1 cut(s) 70
RseI CAYNNNNRTG 1 cut(s) 383
SaqAI TTAA 1 cut(s) 451
SatI GCNGC 1 cut(s) 213
Sau3AI GATC 3 cut(s) 17, 37, 433
ScrFI CCNGG 1 cut(s) 34
SduI GDGCHC 1 cut(s) 120
SetI ASST 7 cut(s) 13, 79, 94, 202, 217, 378, 445
SfaNI GCATC 1 cut(s) 169
SmiMI CAYNNNNRTG 1 cut(s) 383
Sse9I AATT 4 cut(s) 139, 239, 311, 322
SspMI CTAG 1 cut(s) 93
StyD4I CCNGG 1 cut(s) 32
TaaI ACNGT 1 cut(s) 46
TaqI TCGA 1 cut(s) 16
TasI AATT 4 cut(s) 139, 239, 311, 322
TatI WGTACW 1 cut(s) 69
TfiI GAWTC 3 cut(s) 26, 271, 353
Tru1I TTAA 1 cut(s) 451
Tru9I TTAA 1 cut(s) 451
TscAI CASTG 1 cut(s) 27
TseI GCWGC 1 cut(s) 212
TspDTI ATGAA 2 cut(s) 168, 267
TspGWI ACGGA 1 cut(s) 410
TspRI CASTG 1 cut(s) 27
XceI RCATGY 1 cut(s) 60
XspI CTAG 1 cut(s) 93
Zsp2I ATGCAT 1 cut(s) 421
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.