FvH4_6g33730

Survival protein SurE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0002356
Physical Location & Seq
Forward (+)
26728317 .. 26732915
4599 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g33730.t2

Sequence Viewer

Length: 1119 bp
ATGACTTCAACATCTGTGAAACCCAACATGTTGCCTCCTGGGTTGGTCTCCAATCTGCAAGACGTGTTGAGCAAAAGGGGTGGAGGTGACCAACCCACTCAGCCCTCAACTTCTCAACCTGAAGAGGACTCTCTTGATAGCTCCAAGCCCATTGTGTTGGTCACCAATGGCGATGGGATTGACTCCCCTGGTCTTACTTTCCTTGTTGAAGCTCTCGTTCGCCAAGGCCTTTACAATGTCCATGTCTGCGCTCCTCAATCGGACAAATCAGTATCCGGTCATTCGGTGACTCTCCGGGAAACGGTTTCTGTTAGTTCTGCTGATATGAATGGTGCCACTGCTTATGAAGTTGCAGGTACCCCCGTAGATTGTGTGTCATTAGCGTTATCTGGTGCACTGTTTTCTTGGTCAAAGCCTCTGCTGGTAATTAGTGGAATCAACCGGGGATCAAACTGCGGCCATCACATGTTGTACTCAGGTGTTGTTGCTGGAGCTAGGGAGGCACTGATAAGTGGAGTACCCTCTCTATCAATATCACTGAATTGGAGGAAGGATGAAAGTCAAGAAAATGATTTCAAAGATGCAGTCGCTGTTTGTTTACCTCTAATAAATGCAGCTATCAGGGATATTGAGAAGGGGGATTTCCCCAAGAGTTGCTTCCTGAATATAGAGATTCCATCATCTCCTTTATCCAATAAGGGTTTTAAAATAACCAAGCAAAGCACGTGGAGATCTATTCCCAGCTGGCAAGCTGTTTCAGGTAATCGTTATCCTCCTGGACATTTTATGAATAATCAACAAAGCCTTGGGATTCAGCTCGCACAACTTGGCCGAGATGCATCTGCTGCTGGTGCTGCTCGTCGTGTGACGACACAAAAGAAGAATGTGGAGATTGAATCAACTGGAGCTGCAGGAAAATCTGATTTTGAACGGGTGAAAAAGTACTTCCGACTAGAGTTTGTGGATAAGGAGCAGGATAATGTGGATGAGGATCTGGATTTCAGAGCAGTTGAAAGTGGATTTGTATCGGTAACTCCTCTTTCCCTTTCACCACATCTCGAGTCCGATACTCAAATAGCTGCCTCCAATTGGATCTCATCTGCACTTCAAGAGCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 ko00760 ko01100 ko01110 map00230 map00240 map00760 map01100 map01110
Pfam Domains
Protein Families
SurE

Protein Analysis

373

Amino Acids

39.86

Weight (kDa)

5.35

Isoelectric Point (pI)

40.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SurE PF01975 52 - 244 3.4e-52 Survival protein SurE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 344
Acc65I GGTACC 1 cut(s) 356
AccB1I GGYRCC 2 cut(s) 332, 356
AciI CCGC 1 cut(s) 456
AclWI GGATC 3 cut(s) 454, 999, 1100
AcoI YGGCCR 2 cut(s) 457, 829
AcuI CTGAAG 1 cut(s) 141
AcvI CACGTG 1 cut(s) 726
AfaI GTAC 4 cut(s) 358, 473, 519, 944
AfiI CCNNNNNNNGG 2 cut(s) 301, 1089
AflIII ACRYGT 3 cut(s) 27, 63, 465
AgsI TTSAA 7 cut(s) 9, 209, 577, 896, 929, 1013, 1109
AjiI CACGTC 1 cut(s) 64
AjnI CCWGG 3 cut(s) 37, 187, 775
AjuI GAANNNNNNNTTGG 2 cut(s) 641, 673
AluBI AGCT 9 cut(s) 141, 212, 494, 617, 744, 752, 817, 908, 1079
AluI AGCT 9 cut(s) 141, 212, 494, 617, 744, 752, 817, 908, 1079
Alw21I GWGCWC 1 cut(s) 397
Alw26I GTCTC 1 cut(s) 52
Alw44I GTGCAC 1 cut(s) 393
AlwI GGATC 3 cut(s) 454, 999, 1100
AlwNI CAGNNNCTG 1 cut(s) 590
Ama87I CYCGRG 1 cut(s) 1058
AoxI GGCC 3 cut(s) 226, 457, 829
ApaLI GTGCAC 1 cut(s) 393
ApeKI GCWGC 5 cut(s) 614, 845, 854, 908, 1079
ArsI GACNNNNNNTTYG 2 cut(s) 570, 602
Asp718I GGTACC 1 cut(s) 356
AspLEI GCGC 1 cut(s) 251
AsuC2I CCSGG 2 cut(s) 296, 443
AsuHPI GGTGA 5 cut(s) 98, 154, 298, 946, 1041
AvaI CYCGRG 1 cut(s) 1058
BaeGI GKGCMC 1 cut(s) 397
BaeI ACNNNNGTAYC 2 cut(s) 348, 381
BanI GGYRCC 2 cut(s) 332, 356
BbrPI CACGTG 1 cut(s) 726
Bbv12I GWGCWC 1 cut(s) 397
BbvI GCAGC 5 cut(s) 626, 832, 841, 895, 1066
BccI CCATC 3 cut(s) 167, 468, 685
BciT130I CCWGG 3 cut(s) 39, 189, 777
BciVI GTATCC 1 cut(s) 283
BcnI CCSGG 2 cut(s) 296, 443
BcoDI GTCTC 1 cut(s) 52
BfaI CTAG 2 cut(s) 495, 953
BfmI CTRYAG 1 cut(s) 909
BfuAI ACCTGC 1 cut(s) 344
BfuI GTATCC 1 cut(s) 283
BglII AGATCT 1 cut(s) 731
BisI GCNGC 6 cut(s) 457, 615, 846, 855, 909, 1080
BlsI GCNGC 6 cut(s) 458, 616, 847, 856, 910, 1081
BmcAI AGTACT 1 cut(s) 944
Bme1390I CCNGG 5 cut(s) 39, 189, 296, 443, 777
BmeT110I CYCGRG 1 cut(s) 1058
BmgBI CACGTC 1 cut(s) 64
BmiI GGNNCC 2 cut(s) 334, 358
BmrFI CCNGG 5 cut(s) 39, 189, 296, 443, 777
BmsI GCATC 3 cut(s) 571, 826, 848
BpmI CTGGAG 2 cut(s) 510, 924
BpuMI CCSGG 2 cut(s) 296, 443
BsaAI YACGTR 1 cut(s) 726
BsaBI GATNNNNATC 2 cut(s) 990, 1024
BsaI GGTCTC 1 cut(s) 52
BsaJI CCNNGG 5 cut(s) 38, 187, 223, 442, 805
BsaWI WCCGGW 1 cut(s) 275
Bsc4I CCNNNNNNNGG 2 cut(s) 301, 1089
Bse1I ACTGG 1 cut(s) 907
Bse8I GATNNNNATC 2 cut(s) 990, 1024
BseBI CCWGG 3 cut(s) 39, 189, 777
BseDI CCNNGG 5 cut(s) 38, 187, 223, 442, 805
BseGI GGATG 2 cut(s) 559, 991
BseJI GATNNNNATC 2 cut(s) 990, 1024
BseLI CCNNNNNNNGG 2 cut(s) 301, 1089
BseMII CTCAG 2 cut(s) 113, 489
BseNI ACTGG 1 cut(s) 907
BseRI GAGGAG 2 cut(s) 243, 1026
BseSI GKGCMC 1 cut(s) 397
BseXI GCAGC 5 cut(s) 626, 832, 841, 895, 1066
BseYI CCCAGC 1 cut(s) 740
BsgI GTGCAG 1 cut(s) 1086
BshFI GGCC 3 cut(s) 228, 459, 831
BshNI GGYRCC 2 cut(s) 332, 356
BsiHKAI GWGCWC 1 cut(s) 397
BsiHKCI CYCGRG 1 cut(s) 1058
BsiSI CCGG 3 cut(s) 276, 295, 442
BslI CCNNNNNNNGG 2 cut(s) 301, 1089
BsmAI GTCTC 1 cut(s) 52
BsnI GGCC 3 cut(s) 228, 459, 831
Bso31I GGTCTC 1 cut(s) 52
BsoBI CYCGRG 1 cut(s) 1058
Bsp1286I GDGCHC 1 cut(s) 397
Bsp143I GATC 4 cut(s) 446, 731, 991, 1092
BspACI CCGC 1 cut(s) 456
BspANI GGCC 3 cut(s) 228, 459, 831
BspCNI CTCAG 2 cut(s) 112, 488
BspLI GGNNCC 2 cut(s) 334, 358
BspMAI CTGCAG 1 cut(s) 913
BspMI ACCTGC 1 cut(s) 344
BspPI GGATC 3 cut(s) 454, 999, 1100
BspT107I GGYRCC 2 cut(s) 332, 356
BspTNI GGTCTC 1 cut(s) 52
BsrI ACTGG 1 cut(s) 907
BssECI CCNNGG 5 cut(s) 38, 187, 223, 442, 805
BssMI GATC 4 cut(s) 446, 731, 991, 1092
BssT1I CCWWGG 2 cut(s) 223, 805
Bst2UI CCWGG 3 cut(s) 39, 189, 777
Bst4CI ACNGT 2 cut(s) 304, 399
Bst6I CTCTTC 1 cut(s) 117
BstAPI GCANNNNNTGC 1 cut(s) 845
BstBAI YACGTR 1 cut(s) 726
BstC8I GCNNGC 3 cut(s) 746, 750, 819
BstDEI CTNAG 2 cut(s) 99, 475
BstEII GGTNACC 2 cut(s) 86, 160
BstF5I GGATG 2 cut(s) 559, 991
BstHHI GCGC 1 cut(s) 251
BstKTI GATC 4 cut(s) 449, 734, 994, 1095
BstMAI GTCTC 1 cut(s) 52
BstMBI GATC 4 cut(s) 446, 731, 991, 1092
BstMWI GCNNNNNNNGC 4 cut(s) 500, 845, 851, 854
BstNI CCWGG 3 cut(s) 39, 189, 777
BstNSI RCATGY 2 cut(s) 31, 469
BstPI GGTNACC 2 cut(s) 86, 160
BstSCI CCNGG 5 cut(s) 37, 187, 294, 441, 775
BstSFI CTRYAG 1 cut(s) 909
BstSLI GKGCMC 1 cut(s) 397
BstV1I GCAGC 5 cut(s) 626, 832, 841, 895, 1066
BstX2I RGATCY 3 cut(s) 731, 991, 1092
BstXI CCANNNNNNTGG 1 cut(s) 157
BstYI RGATCY 3 cut(s) 731, 991, 1092
BsuI GTATCC 1 cut(s) 283
BsuRI GGCC 3 cut(s) 228, 459, 831
BtgZI GCGATG 1 cut(s) 186
BtrI CACGTC 1 cut(s) 64
BtsCI GGATG 2 cut(s) 559, 991
BtsI GCAGTG 1 cut(s) 336
BtsIMutI CAGTG 4 cut(s) 336, 395, 503, 536
BveI ACCTGC 1 cut(s) 344
Cac8I GCNNGC 3 cut(s) 746, 750, 819
CaiI CAGNNNCTG 1 cut(s) 590
CfoI GCGC 1 cut(s) 251
Csp6I GTAC 4 cut(s) 357, 472, 518, 943
CspCI CAANNNNNGTGG 4 cut(s) 61, 96, 707, 742
CviAII CATG 3 cut(s) 28, 242, 466
CviQI GTAC 4 cut(s) 357, 472, 518, 943
DdeI CTNAG 2 cut(s) 99, 475
DpnI GATC 4 cut(s) 448, 733, 993, 1094
DpnII GATC 4 cut(s) 446, 731, 991, 1092
DraI TTTAAA 1 cut(s) 706
EaeI YGGCCR 2 cut(s) 457, 829
Eam1104I CTCTTC 1 cut(s) 117
EarI CTCTTC 1 cut(s) 117
Eco130I CCWWGG 2 cut(s) 223, 805
Eco147I AGGCCT 1 cut(s) 228
Eco31I GGTCTC 1 cut(s) 52
Eco57I CTGAAG 1 cut(s) 141
Eco72I CACGTG 1 cut(s) 726
Eco88I CYCGRG 1 cut(s) 1058
Eco91I GGTNACC 2 cut(s) 86, 160
EcoO65I GGTNACC 2 cut(s) 86, 160
EcoRII CCWGG 3 cut(s) 37, 187, 775
EcoT14I CCWWGG 2 cut(s) 223, 805
EcoT22I ATGCAT 1 cut(s) 841
ErhI CCWWGG 2 cut(s) 223, 805
FaeI CATG 3 cut(s) 31, 245, 469
FaiI YATR 7 cut(s) 29, 243, 326, 345, 467, 668, 788
FalI AAGNNNNNCTT 2 cut(s) 641, 673
FatI CATG 3 cut(s) 27, 241, 465
Fnu4HI GCNGC 6 cut(s) 457, 615, 846, 855, 909, 1080
FokI GGATG 2 cut(s) 566, 998
Fsp4HI GCNGC 6 cut(s) 457, 615, 846, 855, 909, 1080
FspBI CTAG 2 cut(s) 495, 953
GlaI GCGC 1 cut(s) 250
GluI GCNGC 6 cut(s) 457, 615, 846, 855, 909, 1080
GsaI CCCAGC 1 cut(s) 744
GsuI CTGGAG 2 cut(s) 510, 924
HaeIII GGCC 3 cut(s) 228, 459, 831
HapII CCGG 3 cut(s) 276, 295, 442
HhaI GCGC 1 cut(s) 251
Hin1II CATG 3 cut(s) 31, 245, 469
Hin6I GCGC 1 cut(s) 249
HinP1I GCGC 1 cut(s) 249
HinfI GANTC 8 cut(s) 128, 182, 289, 435, 673, 811, 896, 1061
HpaII CCGG 3 cut(s) 276, 295, 442
HphI GGTGA 5 cut(s) 98, 154, 298, 946, 1041
Hpy166II GTNNAC 2 cut(s) 395, 599
Hpy188I TCNGA 5 cut(s) 262, 922, 950, 1004, 1066
Hpy188III TCNNGA 6 cut(s) 134, 563, 661, 995, 1058, 1109
Hpy8I GTNNAC 2 cut(s) 395, 599
Hpy99I CGWCG 1 cut(s) 864
HpyAV CCTTC 2 cut(s) 544, 628
HpyCH4III ACNGT 2 cut(s) 304, 399
HpyCH4IV ACGT 2 cut(s) 63, 725
HpyCH4V TGCA 8 cut(s) 58, 353, 395, 584, 614, 839, 911, 1103
HpyF10VI GCNNNNNNNGC 4 cut(s) 500, 845, 851, 854
HpyF3I CTNAG 2 cut(s) 99, 475
HpySE526I ACGT 2 cut(s) 63, 725
Hsp92II CATG 3 cut(s) 31, 245, 469
HspAI GCGC 1 cut(s) 249
KpnI GGTACC 1 cut(s) 360
Kzo9I GATC 4 cut(s) 446, 731, 991, 1092
LmnI GCTCC 5 cut(s) 146, 256, 491, 905, 970
Lsp1109I GCAGC 5 cut(s) 626, 832, 841, 895, 1066
LweI GCATC 3 cut(s) 571, 826, 848
MaeI CTAG 2 cut(s) 495, 953
MaeII ACGT 2 cut(s) 63, 725
MaeIII GTNAC 5 cut(s) 86, 160, 286, 865, 1030
MalI GATC 4 cut(s) 448, 733, 993, 1094
MboI GATC 4 cut(s) 446, 731, 991, 1092
MboII GAAGA 2 cut(s) 134, 892
MfeI CAATTG 1 cut(s) 1087
MflI RGATCY 3 cut(s) 731, 991, 1092
MhlI GDGCHC 1 cut(s) 397
MluCI AATT 3 cut(s) 426, 541, 1087
MlyI GAGTC 4 cut(s) 122, 176, 283, 1070
MmeI TCCRAC 1 cut(s) 973
Mph1103I ATGCAT 1 cut(s) 841
MseI TTAA 1 cut(s) 705
MspA1I CMGCKG 1 cut(s) 744
MspI CCGG 3 cut(s) 276, 295, 442
MspR9I CCNGG 5 cut(s) 39, 189, 296, 443, 777
MunI CAATTG 1 cut(s) 1087
MvaI CCWGG 3 cut(s) 39, 189, 777
MwoI GCNNNNNNNGC 4 cut(s) 500, 845, 851, 854
NciI CCSGG 2 cut(s) 296, 443
NdeII GATC 4 cut(s) 446, 731, 991, 1092
NlaIII CATG 3 cut(s) 31, 245, 469
NlaIV GGNNCC 2 cut(s) 334, 358
NmeAIII GCCGAG 1 cut(s) 857
NmuCI GTSAC 4 cut(s) 86, 160, 286, 865
NsiI ATGCAT 1 cut(s) 841
NspI RCATGY 2 cut(s) 31, 469
PaeR7I CTCGAG 1 cut(s) 1058
PceI AGGCCT 1 cut(s) 228
PciI ACATGT 2 cut(s) 27, 465
PfeI GAWTC 4 cut(s) 435, 673, 811, 896
PfoI TCCNGGA 2 cut(s) 294, 775
PkrI GCNGC 6 cut(s) 458, 616, 847, 856, 910, 1081
PleI GAGTC 4 cut(s) 122, 176, 283, 1069
PmaCI CACGTG 1 cut(s) 726
PmlI CACGTG 1 cut(s) 726
PpsI GAGTC 4 cut(s) 122, 176, 283, 1069
Ppu21I YACGTR 1 cut(s) 726
PscI ACATGT 2 cut(s) 27, 465
Psp6I CCWGG 3 cut(s) 37, 187, 775
PspCI CACGTG 1 cut(s) 726
PspEI GGTNACC 2 cut(s) 86, 160
PspFI CCCAGC 1 cut(s) 740
PspGI CCWGG 3 cut(s) 37, 187, 775
PspN4I GGNNCC 2 cut(s) 334, 358
PstI CTGCAG 1 cut(s) 913
PstNI CAGNNNCTG 1 cut(s) 590
PsuI RGATCY 3 cut(s) 731, 991, 1092
PvuII CAGCTG 1 cut(s) 744
RsaI GTAC 4 cut(s) 358, 473, 519, 944
RsaNI GTAC 4 cut(s) 357, 472, 518, 943
SaqAI TTAA 1 cut(s) 705
SatI GCNGC 6 cut(s) 457, 615, 846, 855, 909, 1080
Sau3AI GATC 4 cut(s) 446, 731, 991, 1092
ScaI AGTACT 1 cut(s) 944
SchI GAGTC 4 cut(s) 122, 176, 283, 1070
ScrFI CCNGG 5 cut(s) 39, 189, 296, 443, 777
SduI GDGCHC 1 cut(s) 397
SfaNI GCATC 3 cut(s) 571, 826, 848
SfcI CTRYAG 1 cut(s) 909
Sfr274I CTCGAG 1 cut(s) 1058
SlaI CTCGAG 1 cut(s) 1058
SmlI CTYRAG 1 cut(s) 1058
SmoI CTYRAG 1 cut(s) 1058
Sse9I AATT 3 cut(s) 426, 541, 1087
SseBI AGGCCT 1 cut(s) 228
SsiI CCGC 1 cut(s) 456
SspMI CTAG 2 cut(s) 495, 953
StuI AGGCCT 1 cut(s) 228
StyD4I CCNGG 5 cut(s) 37, 187, 294, 441, 775
StyI CCWWGG 2 cut(s) 223, 805
TaaI ACNGT 2 cut(s) 304, 399
TaiI ACGT 2 cut(s) 66, 728
TaqI TCGA 1 cut(s) 1059
TasI AATT 3 cut(s) 426, 541, 1087
TatI WGTACW 2 cut(s) 471, 942
TauI GCSGC 1 cut(s) 459
TfiI GAWTC 4 cut(s) 435, 673, 811, 896
Tru1I TTAA 1 cut(s) 705
Tru9I TTAA 1 cut(s) 705
TscAI CASTG 4 cut(s) 343, 402, 510, 543
TseFI GTSAC 4 cut(s) 86, 160, 286, 865
TseI GCWGC 5 cut(s) 614, 845, 854, 908, 1079
Tsp45I GTSAC 4 cut(s) 86, 160, 286, 865
TspDTI ATGAA 4 cut(s) 341, 360, 570, 803
TspRI CASTG 4 cut(s) 343, 402, 510, 543
VneI GTGCAC 1 cut(s) 393
XceI RCATGY 2 cut(s) 31, 469
XhoI CTCGAG 1 cut(s) 1058
XspI CTAG 2 cut(s) 495, 953
ZrmI AGTACT 1 cut(s) 944
Zsp2I ATGCAT 1 cut(s) 841
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.