Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0002356

Physical Location & Seq

Genomic Coordinates Reverse (-)

3370776 .. 3375894

Gene Structure 5119 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G047500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGACTTCAACATCTGTGAAACCCACCTTGTTGCCTCCGGGCTTGGTCTCCAATCTACAAGATGTGTTGAGCAAAAGGGCTGGTGGTGAAGGAGACAAAACTGCTGAATCTACTGACCCTCCTTCTACTTCTGAAGCTGCTGATACTGTAGAGGACCCTAATGACAGTTCCAAGCCCATTGTTTTGGTCACCAATGGTGATGGGATTGAGTCCCCTGGCCTCACTTACCTCGTTGAAGCTCTGGTCCACCAAGGCCTTTACAATGTCCATGTCTGCGCTCCTCAATCGGACAAATCTCTGTCAGGTCATTCTGTGACCCTCCGGGAAACGGTTTCTGTGAGTTCTGCTGAGATAAAGGGTGCCACAGCTTATGAAGTTTCAGGGACTCCCGTGGATTGTGTTTCATTAGCATTATCTGGGGCTCTGTTTTCTTGGTCAAAGCCTTTGCTGGTAATCAGTGGAATCAACCGGGGATCAAGCTGCGGTCATCATATGTTGTACTCGGGTGTTGTTGCTGGAGCCAGGGAAGCATTAATAAGTGGAATACCATCTTTGTCAATATCACTAAATTGGAGGAAGGATGAAAGTCAAGAAAATGATTTCAAAGATGCAGTTGCTGTCTGTTTACCTTTGATAAATGCAGCTATCAGGGATATTGAAAAGGGAATTTTCCCCAACAGTTGCTTCCTCAATATAGAAATTCCATCATCTCCTTTGTCAATCAAGGGTTTTAAGTTGACCAAGCAAAGCATGTGGAGATCAACTCCTAGCTGGCAAGCCATTTCAGCTAGTCGGTATCCTGCTGGGCATTTCATGAACAGTCAACAAAGCCTTGGAATTCAGCTTGCTCAGCTTGGTCGGGATGCTTCTGCTGCCGGTGCAGCTCGTCGCGTGACGACACAGAGGAAGAACGTGGAGATTGAATCAACTGGAGGTGCAGGAAAATCTGACTTTGAACGGGTGAAAAAATACTTCCGACTAGAGTTTGTCGATAAGGAGGAGGAAGATACGGATGAGGATCTGGATTTCAGAGCACTTGAAAGTGGATTTGTCTCGGTAACGCCTCTCTCTCTTTCACCACATCTTGAGTCAGAAACTCAAACAGCTGCCTCCAATTGGATCTCTTCTGCCCTTGAAGAGCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00760 ko01100 ko01110 map00230 map00240 map00760 map01100 map01110

Pfam Domains

Protein Families

SurE

Protein Analysis

382

Amino Acids

40.69

Weight (kDa)

5.02

Isoelectric Point (pI)

40.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002356)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72880 AT1G72880
fragaria_vesca	FvH4_1g07790 FvH4_1g07790 FvH4_1g07790 FvH4_1g07790 FvH4_6g33730 FvH4_6g33730
malus_domestica	MD09G1191400.v1.1
prunus_persica	Prupe.3G047500_v2.0.a1 Prupe.3G047500_v2.0.a1 Prupe.7G207000_v2.0.a1
pyrus_communis	pycom09g10790
rosa_chinensis	RchiOBHm_Chr2g0093661 RchiOBHm_Chr2g0143621 RchiOBHm_Chr3g0459491
rosa_laevigata	RLG00000016425 RLG00000020054
rosa_multiflora	Rmu_sc0002126.1_g000013 Rmu_sc0004340.1_g000025 Rmu_sc0005308.1_g000007
rosa_roxburghii	Rroxscaffold_2G00101590
rosa_rugosa	Rorug02G0038600 Rorug02G0384500 Rorug05G0356400 Rorug05G0520900
rosa_samantha	Rh1AG149800 Rh1CG141000 Rh1DG156900 Rh2AG085000 Rh2AG436300 Rh2BG085500 Rh2BG443900 Rh2CG087800 Rh2CG422600 Rh3CG098900 Rh3DG098200 Rh6CG030400 Rh6DG029300
rosa_wichuraiana	Rw0G013920 Rw2G035560 Rw3G008140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	359
AccII	CGCG	1 cut(s)	891
AciI	CCGC	1 cut(s)	483
AclWI	GGATC	3 cut(s)	481, 1026, 1127
AcsI	RAATTY	3 cut(s)	666, 699, 837
AcuI	CTGAAG	1 cut(s)	153
AfaI	GTAC	1 cut(s)	500
AfiI	CCNNNNNNNGG	2 cut(s)	328, 1116
AgsI	TTSAA	8 cut(s)	9, 236, 604, 659, 923, 956, 1040, 1136
AjnI	CCWGG	2 cut(s)	214, 521
AjuI	GAANNNNNNNTTGG	2 cut(s)	668, 700
Alw21I	GWGCWC	1 cut(s)	1036
Alw26I	GTCTC	3 cut(s)	52, 87, 1057
AlwI	GGATC	3 cut(s)	481, 1026, 1127
AlwNI	CAGNNNCTG	1 cut(s)	617
Ama87I	CYCGRG	1 cut(s)	502
AoxI	GGCC	2 cut(s)	217, 253
ApeKI	GCWGC	6 cut(s)	137, 480, 641, 872, 881, 1106
ApoI	RAATTY	3 cut(s)	666, 699, 837
AseI	ATTAAT	1 cut(s)	533
AspLEI	GCGC	1 cut(s)	278
AspS9I	GGNCC	2 cut(s)	154, 244
AsuC2I	CCSGG	3 cut(s)	39, 323, 470
AsuHPI	GGTGA	5 cut(s)	98, 181, 209, 973, 1068
AvaI	CYCGRG	1 cut(s)	502
AvaII	GGWCC	2 cut(s)	154, 244
BanI	GGYRCC	1 cut(s)	359
BanII	GRGCYC	1 cut(s)	424
Bbv12I	GWGCWC	1 cut(s)	1036
BbvI	GCAGC	6 cut(s)	124, 467, 653, 859, 893, 1093
BccI	CCATC	3 cut(s)	194, 556, 712
BciT130I	CCWGG	2 cut(s)	216, 523
BciVI	GTATCC	1 cut(s)	807
BcnI	CCSGG	3 cut(s)	39, 323, 470
BcoDI	GTCTC	3 cut(s)	52, 87, 1057
BfaI	CTAG	3 cut(s)	768, 789, 980
BfmI	CTRYAG	1 cut(s)	147
BfuI	GTATCC	1 cut(s)	807
BisI	GCNGC	6 cut(s)	138, 481, 642, 873, 882, 1107
BlpI	GCTNAGC	1 cut(s)	849
BlsI	GCNGC	6 cut(s)	139, 482, 643, 874, 883, 1108
Bme1390I	CCNGG	5 cut(s)	39, 216, 323, 470, 523
Bme18I	GGWCC	2 cut(s)	154, 244
BmeT110I	CYCGRG	1 cut(s)	502
BmgT120I	GGNCC	2 cut(s)	154, 244
BmiI	GGNNCC	3 cut(s)	156, 361, 520
BmrFI	CCNGG	5 cut(s)	39, 216, 323, 470, 523
BmsI	GCATC	2 cut(s)	598, 853
BplI	GAGNNNNNCTC	2 cut(s)	748, 780
BpmI	CTGGAG	2 cut(s)	537, 951
Bpu1102I	GCTNAGC	1 cut(s)	849
BpuEI	CTTGAG	1 cut(s)	1106
BpuMI	CCSGG	3 cut(s)	39, 323, 470
BsaBI	GATNNNNATC	1 cut(s)	1017
BsaI	GGTCTC	1 cut(s)	52
BsaJI	CCNNGG	6 cut(s)	214, 250, 390, 469, 522, 832
BsaXI	ACNNNNNCTCC	2 cut(s)	103, 133
Bsc4I	CCNNNNNNNGG	2 cut(s)	328, 1116
Bse118I	RCCGGY	1 cut(s)	875
Bse1I	ACTGG	1 cut(s)	934
Bse8I	GATNNNNATC	1 cut(s)	1017
BseBI	CCWGG	2 cut(s)	216, 523
BseDI	CCNNGG	6 cut(s)	214, 250, 390, 469, 522, 832
BseGI	GGATG	3 cut(s)	586, 868, 1018
BseJI	GATNNNNATC	1 cut(s)	1017
BseLI	CCNNNNNNNGG	2 cut(s)	328, 1116
BseMII	CTCAG	2 cut(s)	339, 863
BseNI	ACTGG	1 cut(s)	934
BseRI	GAGGAG	2 cut(s)	270, 1013
BseXI	GCAGC	6 cut(s)	124, 467, 653, 859, 893, 1093
BseYI	CCCAGC	1 cut(s)	803
BsgI	GTGCAG	2 cut(s)	900, 957
Bsh1236I	CGCG	1 cut(s)	891
BshFI	GGCC	2 cut(s)	219, 255
BshNI	GGYRCC	1 cut(s)	359
BsiHKAI	GWGCWC	1 cut(s)	1036
BsiHKCI	CYCGRG	1 cut(s)	502
BsiSI	CCGG	4 cut(s)	38, 322, 469, 876
BslFI	GGGAC	2 cut(s)	196, 397
BslI	CCNNNNNNNGG	2 cut(s)	328, 1116
BsmAI	GTCTC	3 cut(s)	52, 87, 1057
BsmFI	GGGAC	2 cut(s)	196, 397
BsnI	GGCC	2 cut(s)	219, 255
Bso31I	GGTCTC	1 cut(s)	52
BsoBI	CYCGRG	1 cut(s)	502
Bsp1286I	GDGCHC	2 cut(s)	424, 1036
Bsp143I	GATC	4 cut(s)	473, 758, 1018, 1119
Bsp1720I	GCTNAGC	1 cut(s)	849
BspACI	CCGC	1 cut(s)	483
BspANI	GGCC	2 cut(s)	219, 255
BspCNI	CTCAG	2 cut(s)	340, 862
BspFNI	CGCG	1 cut(s)	891
BspHI	TCATGA	1 cut(s)	813
BspLI	GGNNCC	3 cut(s)	156, 361, 520
BspPI	GGATC	3 cut(s)	481, 1026, 1127
BspQI	GCTCTTC	1 cut(s)	1131
BspT107I	GGYRCC	1 cut(s)	359
BspTNI	GGTCTC	1 cut(s)	52
BsrFI	RCCGGY	1 cut(s)	875
BsrI	ACTGG	1 cut(s)	934
BssAI	RCCGGY	1 cut(s)	875
BssECI	CCNNGG	6 cut(s)	214, 250, 390, 469, 522, 832
BssMI	GATC	4 cut(s)	473, 758, 1018, 1119
BssT1I	CCWWGG	2 cut(s)	250, 832
Bst2UI	CCWGG	2 cut(s)	216, 523
Bst4CI	ACNGT	5 cut(s)	148, 167, 331, 680, 821
Bst6I	CTCTTC	2 cut(s)	1129, 1131
BstC8I	GCNNGC	3 cut(s)	773, 777, 846
BstDEI	CTNAG	2 cut(s)	348, 849
BstDSI	CCRYGG	1 cut(s)	390
BstEII	GGTNACC	1 cut(s)	187
BstF5I	GGATG	3 cut(s)	586, 868, 1018
BstFNI	CGCG	1 cut(s)	891
BstHHI	GCGC	1 cut(s)	278
BstKTI	GATC	4 cut(s)	476, 761, 1021, 1122
BstMAI	GTCTC	3 cut(s)	52, 87, 1057
BstMBI	GATC	4 cut(s)	473, 758, 1018, 1119
BstMWI	GCNNNNNNNGC	6 cut(s)	527, 785, 850, 872, 878, 881
BstNI	CCWGG	2 cut(s)	216, 523
BstNSI	RCATGY	1 cut(s)	754
BstPI	GGTNACC	1 cut(s)	187
BstSCI	CCNGG	5 cut(s)	37, 214, 321, 468, 521
BstSFI	CTRYAG	1 cut(s)	147
BstUI	CGCG	1 cut(s)	891
BstV1I	GCAGC	6 cut(s)	124, 467, 653, 859, 893, 1093
BstX2I	RGATCY	2 cut(s)	1018, 1119
BstXI	CCANNNNNNTGG	1 cut(s)	184
BstYI	RGATCY	2 cut(s)	1018, 1119
BsuI	GTATCC	1 cut(s)	807
BsuRI	GGCC	2 cut(s)	219, 255
BtgI	CCRYGG	1 cut(s)	390
BtsCI	GGATG	3 cut(s)	586, 868, 1018
BtsIMutI	CAGTG	1 cut(s)	463
Cac8I	GCNNGC	3 cut(s)	773, 777, 846
CaiI	CAGNNNCTG	1 cut(s)	617
CciI	TCATGA	1 cut(s)	813
CfoI	GCGC	1 cut(s)	278
Cfr10I	RCCGGY	1 cut(s)	875
Cfr13I	GGNCC	2 cut(s)	154, 244
Csp6I	GTAC	1 cut(s)	499
CspCI	CAANNNNNGTGG	2 cut(s)	734, 769
CviAII	CATG	3 cut(s)	269, 751, 814
CviQI	GTAC	1 cut(s)	499
DdeI	CTNAG	2 cut(s)	348, 849
DpnI	GATC	4 cut(s)	475, 760, 1020, 1121
DpnII	GATC	4 cut(s)	473, 758, 1018, 1119
Eam1104I	CTCTTC	2 cut(s)	1129, 1131
EarI	CTCTTC	2 cut(s)	1129, 1131
Eco130I	CCWWGG	2 cut(s)	250, 832
Eco147I	AGGCCT	1 cut(s)	255
Eco24I	GRGCYC	1 cut(s)	424
Eco31I	GGTCTC	1 cut(s)	52
Eco47I	GGWCC	2 cut(s)	154, 244
Eco57I	CTGAAG	1 cut(s)	153
Eco88I	CYCGRG	1 cut(s)	502
Eco91I	GGTNACC	1 cut(s)	187
EcoO109I	RGGNCCY	1 cut(s)	154
EcoO65I	GGTNACC	1 cut(s)	187
EcoRI	GAATTC	1 cut(s)	837
EcoRII	CCWGG	2 cut(s)	214, 521
EcoT14I	CCWWGG	2 cut(s)	250, 832
EcoT38I	GRGCYC	1 cut(s)	424
ErhI	CCWWGG	2 cut(s)	250, 832
FaeI	CATG	3 cut(s)	272, 754, 817
FaiI	YATR	7 cut(s)	270, 372, 492, 494, 695, 752, 815
FaqI	GGGAC	2 cut(s)	196, 397
FatI	CATG	3 cut(s)	268, 750, 813
FauNDI	CATATG	1 cut(s)	492
Fnu4HI	GCNGC	6 cut(s)	138, 481, 642, 873, 882, 1107
FokI	GGATG	3 cut(s)	593, 875, 1025
FriOI	GRGCYC	1 cut(s)	424
Fsp4HI	GCNGC	6 cut(s)	138, 481, 642, 873, 882, 1107
FspBI	CTAG	3 cut(s)	768, 789, 980
GlaI	GCGC	1 cut(s)	277
GluI	GCNGC	6 cut(s)	138, 481, 642, 873, 882, 1107
GsaI	CCCAGC	1 cut(s)	807
GsuI	CTGGAG	2 cut(s)	537, 951
HaeIII	GGCC	2 cut(s)	219, 255
HapII	CCGG	4 cut(s)	38, 322, 469, 876
HhaI	GCGC	1 cut(s)	278
Hin1II	CATG	3 cut(s)	272, 754, 817
Hin6I	GCGC	1 cut(s)	276
HinP1I	GCGC	1 cut(s)	276
HincII	GTYRAC	2 cut(s)	738, 824
HindII	GTYRAC	2 cut(s)	738, 824
HinfI	GANTC	6 cut(s)	107, 209, 385, 462, 923, 1088
HpaII	CCGG	4 cut(s)	38, 322, 469, 876
HphI	GGTGA	5 cut(s)	98, 181, 209, 973, 1068
Hpy166II	GTNNAC	4 cut(s)	247, 626, 738, 824
Hpy188I	TCNGA	6 cut(s)	133, 289, 949, 977, 1031, 1093
Hpy188III	TCNNGA	5 cut(s)	590, 814, 860, 1022, 1085
Hpy8I	GTNNAC	4 cut(s)	247, 626, 738, 824
Hpy99I	CGWCG	1 cut(s)	891
HpyAV	CCTTC	3 cut(s)	83, 132, 571
HpyCH4III	ACNGT	5 cut(s)	148, 167, 331, 680, 821
HpyCH4IV	ACGT	1 cut(s)	912
HpyCH4V	TGCA	4 cut(s)	611, 641, 881, 938
HpyF10VI	GCNNNNNNNGC	6 cut(s)	527, 785, 850, 872, 878, 881
HpyF3I	CTNAG	2 cut(s)	348, 849
HpySE526I	ACGT	1 cut(s)	912
Hsp92II	CATG	3 cut(s)	272, 754, 817
HspAI	GCGC	1 cut(s)	276
Kzo9I	GATC	4 cut(s)	473, 758, 1018, 1119
LguI	GCTCTTC	1 cut(s)	1131
LmnI	GCTCC	2 cut(s)	283, 518
Lsp1109I	GCAGC	6 cut(s)	124, 467, 653, 859, 893, 1093
LweI	GCATC	2 cut(s)	598, 853
MaeI	CTAG	3 cut(s)	768, 789, 980
MaeII	ACGT	1 cut(s)	912
MaeIII	GTNAC	4 cut(s)	187, 313, 892, 1057
MalI	GATC	4 cut(s)	475, 760, 1020, 1121
MboI	GATC	4 cut(s)	473, 758, 1018, 1119
MboII	GAAGA	3 cut(s)	919, 1016, 1116
MfeI	CAATTG	1 cut(s)	1114
MflI	RGATCY	2 cut(s)	1018, 1119
MhlI	GDGCHC	2 cut(s)	424, 1036
MluCI	AATT	5 cut(s)	568, 666, 699, 837, 1114
MlyI	GAGTC	3 cut(s)	218, 379, 1097
MmeI	TCCRAC	1 cut(s)	1000
MseI	TTAA	2 cut(s)	533, 732
MspA1I	CMGCKG	1 cut(s)	1106
MspI	CCGG	4 cut(s)	38, 322, 469, 876
MspR9I	CCNGG	5 cut(s)	39, 216, 323, 470, 523
MunI	CAATTG	1 cut(s)	1114
MvaI	CCWGG	2 cut(s)	216, 523
MvnI	CGCG	1 cut(s)	891
MwoI	GCNNNNNNNGC	6 cut(s)	527, 785, 850, 872, 878, 881
NciI	CCSGG	3 cut(s)	39, 323, 470
NdeI	CATATG	1 cut(s)	492
NdeII	GATC	4 cut(s)	473, 758, 1018, 1119
NlaIII	CATG	3 cut(s)	272, 754, 817
NlaIV	GGNNCC	3 cut(s)	156, 361, 520
NmuCI	GTSAC	3 cut(s)	187, 313, 892
NspI	RCATGY	1 cut(s)	754
PagI	TCATGA	1 cut(s)	813
PceI	AGGCCT	1 cut(s)	255
PciSI	GCTCTTC	1 cut(s)	1131
PfeI	GAWTC	3 cut(s)	107, 462, 923
PfoI	TCCNGGA	1 cut(s)	321
PkrI	GCNGC	6 cut(s)	139, 482, 643, 874, 883, 1108
PleI	GAGTC	3 cut(s)	217, 379, 1096
PpsI	GAGTC	3 cut(s)	217, 379, 1096
PpuMI	RGGWCCY	1 cut(s)	154
PshBI	ATTAAT	1 cut(s)	533
Psp5II	RGGWCCY	1 cut(s)	154
Psp6I	CCWGG	2 cut(s)	214, 521
PspEI	GGTNACC	1 cut(s)	187
PspFI	CCCAGC	1 cut(s)	803
PspGI	CCWGG	2 cut(s)	214, 521
PspN4I	GGNNCC	3 cut(s)	156, 361, 520
PspPI	GGNCC	2 cut(s)	154, 244
PspPPI	RGGWCCY	1 cut(s)	154
PstNI	CAGNNNCTG	1 cut(s)	617
PsuI	RGATCY	2 cut(s)	1018, 1119
PvuII	CAGCTG	1 cut(s)	1106
RsaI	GTAC	1 cut(s)	500
RsaNI	GTAC	1 cut(s)	499
SapI	GCTCTTC	1 cut(s)	1131
SaqAI	TTAA	2 cut(s)	533, 732
SatI	GCNGC	6 cut(s)	138, 481, 642, 873, 882, 1107
Sau3AI	GATC	4 cut(s)	473, 758, 1018, 1119
Sau96I	GGNCC	2 cut(s)	154, 244
SchI	GAGTC	3 cut(s)	218, 379, 1097
ScrFI	CCNGG	5 cut(s)	39, 216, 323, 470, 523
SduI	GDGCHC	2 cut(s)	424, 1036
SfaNI	GCATC	2 cut(s)	598, 853
SfcI	CTRYAG	1 cut(s)	147
SinI	GGWCC	2 cut(s)	154, 244
SmlI	CTYRAG	1 cut(s)	1085
SmoI	CTYRAG	1 cut(s)	1085
Sse9I	AATT	5 cut(s)	568, 666, 699, 837, 1114
SseBI	AGGCCT	1 cut(s)	255
SsiI	CCGC	1 cut(s)	483
SspMI	CTAG	3 cut(s)	768, 789, 980
StuI	AGGCCT	1 cut(s)	255
StyD4I	CCNGG	5 cut(s)	37, 214, 321, 468, 521
StyI	CCWWGG	2 cut(s)	250, 832
TaaI	ACNGT	5 cut(s)	148, 167, 331, 680, 821
TaiI	ACGT	1 cut(s)	915
TaqI	TCGA	1 cut(s)	990
TasI	AATT	5 cut(s)	568, 666, 699, 837, 1114
TatI	WGTACW	1 cut(s)	498
TfiI	GAWTC	3 cut(s)	107, 462, 923
Tru1I	TTAA	2 cut(s)	533, 732
Tru9I	TTAA	2 cut(s)	533, 732
TscAI	CASTG	1 cut(s)	463
TseFI	GTSAC	3 cut(s)	187, 313, 892
TseI	GCWGC	6 cut(s)	137, 480, 641, 872, 881, 1106
Tsp45I	GTSAC	3 cut(s)	187, 313, 892
TspDTI	ATGAA	5 cut(s)	387, 393, 597, 802, 830
TspGWI	ACGGA	1 cut(s)	1025
TspRI	CASTG	1 cut(s)	463
VpaK11BI	GGWCC	2 cut(s)	154, 244
VspI	ATTAAT	1 cut(s)	533
XapI	RAATTY	3 cut(s)	666, 699, 837
XceI	RCATGY	1 cut(s)	754
XspI	CTAG	3 cut(s)	768, 789, 980

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.