Rorug02G0038600

Survival protein SurE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0002356
Physical Location & Seq
Forward (+)
3016930 .. 3018080
1151 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0038600.1

Sequence Viewer

Length: 588 bp
ATGCTGTCTCTCTTTGCTGCTTATGCAGGCTATACAAAGCTGGTGCAGATCAGAAAAGGGGGAGGTGGTACTGTGTTCAAGGGGCCTCTTCCGAGTGGCAAAACTGTAGCTGTGAAGAGATTGTTCTACAATACCAGGAAATGGGTAGATGAGTTCTTCAATGAGGTGAATTTGATCAGTGGAATTCAGCACAAGCACCTAGTGAAGCTTTTGGGTTGTAGCATTGAAGGCCCTGAGAGCCTGCTGGTGTATGAATATGTGCCTAACAGGAGCCTCGATCAATTCCTTTTCGATAAGAACAATGATCAGTTTCTTAACTGGAAGCAGCGGTTTGATATTATTGTCGGAACAGCTGAAGGGATTGCATATCTTCATGTAGGCTCTGAAGTAAGAATAATCCACAGGGACATAAAAAGCAGCAATGTTCTTCTGGATGAGAATCTTAGCCCAAAGATCGCAGACTTTGGCCTTGCTCGGTGTTTTGCTTCCAACAAGTCTCATCTTAGCACCGGCATTGCTGGAACACTAGGTTATATGGCCCCAGAGTATCTTGTTCAAGGGCAACTTACAGAGAAAGCAGACTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 ko00760 ko01100 ko01110 map00230 map00240 map00760 map01100 map01110
Pfam Domains
Protein Families
SurE

Protein Analysis

195

Amino Acids

21.78

Weight (kDa)

8.78

Isoelectric Point (pI)

25.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 11 - 194 7.6e-35 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 16 - 194 1.3e-33 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 141
AciI CCGC 1 cut(s) 328
AcsI RAATTY 2 cut(s) 169, 183
AcuI CTGAAG 2 cut(s) 375, 405
AdeI CACNNNGTG 1 cut(s) 202
AfaI GTAC 1 cut(s) 70
AfiI CCNNNNNNNGG 1 cut(s) 141
AgsI TTSAA 4 cut(s) 79, 160, 227, 557
AjnI CCWGG 1 cut(s) 134
AluBI AGCT 4 cut(s) 40, 110, 208, 353
AluI AGCT 4 cut(s) 40, 110, 208, 353
Alw26I GTCTC 2 cut(s) 12, 501
AoxI GGCC 4 cut(s) 83, 229, 466, 537
ApeKI GCWGC 3 cut(s) 17, 325, 417
ApoI RAATTY 2 cut(s) 169, 183
AspS9I GGNCC 3 cut(s) 83, 230, 538
AsuHPI GGTGA 1 cut(s) 178
BbvI GCAGC 3 cut(s) 4, 337, 429
BciT130I CCWGG 1 cut(s) 136
BclI TGATCA 2 cut(s) 174, 304
BcoDI GTCTC 2 cut(s) 12, 501
BfaI CTAG 2 cut(s) 200, 527
BfmI CTRYAG 1 cut(s) 105
BisI GCNGC 3 cut(s) 18, 326, 418
BlsI GCNGC 3 cut(s) 19, 327, 419
Bme1390I CCNGG 1 cut(s) 136
BmgT120I GGNCC 3 cut(s) 83, 230, 538
BmiI GGNNCC 3 cut(s) 84, 272, 540
BmrFI CCNGG 1 cut(s) 136
BsaBI GATNNNNATC 1 cut(s) 438
Bsc4I CCNNNNNNNGG 1 cut(s) 141
Bse118I RCCGGY 1 cut(s) 509
Bse1I ACTGG 1 cut(s) 323
Bse3DI GCAATG 2 cut(s) 427, 513
Bse8I GATNNNNATC 1 cut(s) 438
BseBI CCWGG 1 cut(s) 136
BseGI GGATG 1 cut(s) 439
BseJI GATNNNNATC 1 cut(s) 438
BseLI CCNNNNNNNGG 1 cut(s) 141
BseMI GCAATG 2 cut(s) 427, 513
BseMII CTCAG 1 cut(s) 225
BseNI ACTGG 1 cut(s) 323
BseXI GCAGC 3 cut(s) 4, 337, 429
BsgI GTGCAG 1 cut(s) 65
BshFI GGCC 4 cut(s) 85, 231, 468, 539
BsiSI CCGG 1 cut(s) 510
BslFI GGGAC 1 cut(s) 419
BslI CCNNNNNNNGG 1 cut(s) 141
BsmAI GTCTC 2 cut(s) 12, 501
BsmFI GGGAC 1 cut(s) 419
BsnI GGCC 4 cut(s) 85, 231, 468, 539
Bsp143I GATC 5 cut(s) 48, 174, 277, 304, 453
BspACI CCGC 1 cut(s) 328
BspANI GGCC 4 cut(s) 85, 231, 468, 539
BspCNI CTCAG 1 cut(s) 226
BspLI GGNNCC 3 cut(s) 84, 272, 540
BsrDI GCAATG 2 cut(s) 427, 513
BsrFI RCCGGY 1 cut(s) 509
BsrI ACTGG 1 cut(s) 323
BssAI RCCGGY 1 cut(s) 509
BssMI GATC 5 cut(s) 48, 174, 277, 304, 453
Bst2UI CCWGG 1 cut(s) 136
Bst4CI ACNGT 2 cut(s) 73, 106
Bst6I CTCTTC 2 cut(s) 93, 110
BstC8I GCNNGC 2 cut(s) 28, 242
BstDEI CTNAG 3 cut(s) 234, 443, 503
BstF5I GGATG 1 cut(s) 439
BstKTI GATC 5 cut(s) 51, 177, 280, 307, 456
BstMAI GTCTC 2 cut(s) 12, 501
BstMBI GATC 5 cut(s) 48, 174, 277, 304, 453
BstMWI GCNNNNNNNGC 3 cut(s) 23, 228, 237
BstNI CCWGG 1 cut(s) 136
BstSCI CCNGG 1 cut(s) 134
BstSFI CTRYAG 1 cut(s) 105
BstV1I GCAGC 3 cut(s) 4, 337, 429
BsuRI GGCC 4 cut(s) 85, 231, 468, 539
BtsCI GGATG 1 cut(s) 439
BtsIMutI CAGTG 1 cut(s) 184
Cac8I GCNNGC 2 cut(s) 28, 242
Cfr10I RCCGGY 1 cut(s) 509
Cfr13I GGNCC 3 cut(s) 83, 230, 538
Csp6I GTAC 1 cut(s) 69
CviAII CATG 1 cut(s) 374
CviQI GTAC 1 cut(s) 69
DdeI CTNAG 3 cut(s) 234, 443, 503
DpnI GATC 5 cut(s) 50, 176, 279, 306, 455
DpnII GATC 5 cut(s) 48, 174, 277, 304, 453
DraIII CACNNNGTG 1 cut(s) 202
Eam1104I CTCTTC 2 cut(s) 93, 110
EarI CTCTTC 2 cut(s) 93, 110
Eco57I CTGAAG 2 cut(s) 375, 405
EcoO109I RGGNCCY 2 cut(s) 83, 230
EcoRI GAATTC 1 cut(s) 183
EcoRII CCWGG 1 cut(s) 134
FaeI CATG 1 cut(s) 377
FaiI YATR 9 cut(s) 24, 33, 252, 258, 367, 375, 410, 534, 536
FalI AAGNNNNNCTT 2 cut(s) 549, 581
FaqI GGGAC 1 cut(s) 419
FatI CATG 1 cut(s) 373
FbaI TGATCA 2 cut(s) 174, 304
Fnu4HI GCNGC 3 cut(s) 18, 326, 418
FokI GGATG 1 cut(s) 446
Fsp4HI GCNGC 3 cut(s) 18, 326, 418
FspBI CTAG 2 cut(s) 200, 527
GluI GCNGC 3 cut(s) 18, 326, 418
HaeIII GGCC 4 cut(s) 85, 231, 468, 539
HapII CCGG 1 cut(s) 510
Hin1II CATG 1 cut(s) 377
HindIII AAGCTT 1 cut(s) 206
HinfI GANTC 1 cut(s) 439
HpaII CCGG 1 cut(s) 510
HphI GGTGA 1 cut(s) 178
Hpy188I TCNGA 4 cut(s) 53, 93, 347, 385
Hpy188III TCNNGA 1 cut(s) 431
HpyAV CCTTC 2 cut(s) 221, 350
HpyCH4III ACNGT 2 cut(s) 73, 106
HpyCH4V TGCA 3 cut(s) 26, 46, 365
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 228, 237
HpyF3I CTNAG 3 cut(s) 234, 443, 503
Hsp92II CATG 1 cut(s) 377
Ksp22I TGATCA 2 cut(s) 174, 304
Kzo9I GATC 5 cut(s) 48, 174, 277, 304, 453
LmnI GCTCC 1 cut(s) 270
Lsp1109I GCAGC 3 cut(s) 4, 337, 429
MaeI CTAG 2 cut(s) 200, 527
MalI GATC 5 cut(s) 50, 176, 279, 306, 455
MboI GATC 5 cut(s) 48, 174, 277, 304, 453
MboII GAAGA 5 cut(s) 80, 127, 148, 362, 419
MluCI AATT 3 cut(s) 169, 183, 281
MmeI TCCRAC 2 cut(s) 325, 513
MnlI CCTC 4 cut(s) 56, 96, 157, 284
MseI TTAA 1 cut(s) 315
MspA1I CMGCKG 2 cut(s) 328, 353
MspI CCGG 1 cut(s) 510
MspR9I CCNGG 1 cut(s) 136
MvaI CCWGG 1 cut(s) 136
MwoI GCNNNNNNNGC 3 cut(s) 23, 228, 237
NdeII GATC 5 cut(s) 48, 174, 277, 304, 453
NlaIII CATG 1 cut(s) 377
NlaIV GGNNCC 3 cut(s) 84, 272, 540
PfeI GAWTC 1 cut(s) 439
PflMI CCANNNNNTGG 1 cut(s) 141
PkrI GCNGC 3 cut(s) 19, 327, 419
Psp6I CCWGG 1 cut(s) 134
PspGI CCWGG 1 cut(s) 134
PspN4I GGNNCC 3 cut(s) 84, 272, 540
PspPI GGNCC 3 cut(s) 83, 230, 538
PvuII CAGCTG 1 cut(s) 353
RsaI GTAC 1 cut(s) 70
RsaNI GTAC 1 cut(s) 69
SaqAI TTAA 1 cut(s) 315
SatI GCNGC 3 cut(s) 18, 326, 418
Sau3AI GATC 5 cut(s) 48, 174, 277, 304, 453
Sau96I GGNCC 3 cut(s) 83, 230, 538
ScrFI CCNGG 1 cut(s) 136
SetI ASST 8 cut(s) 42, 67, 112, 168, 201, 210, 355, 532
SfcI CTRYAG 1 cut(s) 105
Sse9I AATT 3 cut(s) 169, 183, 281
SsiI CCGC 1 cut(s) 328
SspMI CTAG 2 cut(s) 200, 527
StyD4I CCNGG 1 cut(s) 134
TaaI ACNGT 2 cut(s) 73, 106
TaqI TCGA 2 cut(s) 276, 291
TasI AATT 3 cut(s) 169, 183, 281
TfiI GAWTC 1 cut(s) 439
Tru1I TTAA 1 cut(s) 315
Tru9I TTAA 1 cut(s) 315
TscAI CASTG 1 cut(s) 184
TseI GCWGC 3 cut(s) 17, 325, 417
TspDTI ATGAA 2 cut(s) 267, 362
TspRI CASTG 1 cut(s) 184
Van91I CCANNNNNTGG 1 cut(s) 141
XapI RAATTY 2 cut(s) 169, 183
XspI CTAG 2 cut(s) 200, 527
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.