Rh1AG149800

Survival protein SurE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0002356
Physical Location & Seq
Forward (+)
28208665 .. 28213531
4867 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG149800.1

Sequence Viewer

Length: 363 bp
ATGGTTTCAGGTAATAAATCAGTTGAATCAACCGGGGATCAAACTATGGCCATCAAATGTAAGTTGTTGTACTCGGGTGTTGTTGCTGGAGCTAGGGAGGCACTAATAAGTGGAGTGCCTTCTTTATCAATATCACTAAATTGGAGGAAGGATGAAAGTCAAGAAAATGATTTCAAAGATGCAGTTGTTTGTTTACCTCTAATAAATGCAGCTATCAGGGATATTGAGAAGGGTGAATTCCCCAAGAGTTTCTTTCTAAATATAGAGATTACTTCATCTCCTTTATCAAACAAGCGCAAATGTTTGCATTACAGCAGTCACTATTTTCTCAGACAAATCGACGGCAATCAACTTAGTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 ko00760 ko01100 ko01110 map00230 map00240 map00760 map01100 map01110
Pfam Domains
Protein Families
SurE

Protein Analysis

120

Amino Acids

13.3

Weight (kDa)

6.73

Isoelectric Point (pI)

56.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SurE PF01975 21 - 96 6.1e-09 Survival protein SurE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 45
AcoI YGGCCR 1 cut(s) 48
AcsI RAATTY 1 cut(s) 236
AfaI GTAC 1 cut(s) 71
AgsI TTSAA 2 cut(s) 26, 175
AluBI AGCT 2 cut(s) 92, 212
AluI AGCT 2 cut(s) 92, 212
AlwI GGATC 1 cut(s) 45
Ama87I CYCGRG 1 cut(s) 73
AoxI GGCC 1 cut(s) 48
ApeKI GCWGC 1 cut(s) 209
ApoI RAATTY 1 cut(s) 236
AspLEI GCGC 1 cut(s) 297
AsuC2I CCSGG 1 cut(s) 34
AsuHPI GGTGA 1 cut(s) 245
AvaI CYCGRG 1 cut(s) 73
BalI TGGCCA 1 cut(s) 50
BbvI GCAGC 1 cut(s) 221
BccI CCATC 1 cut(s) 59
BceAI ACGGC 1 cut(s) 358
BcnI CCSGG 1 cut(s) 34
BfaI CTAG 1 cut(s) 93
BisI GCNGC 1 cut(s) 210
BlsI GCNGC 1 cut(s) 211
Bme1390I CCNGG 1 cut(s) 34
BmeT110I CYCGRG 1 cut(s) 73
BmrFI CCNGG 1 cut(s) 34
BmsI GCATC 1 cut(s) 169
BpmI CTGGAG 1 cut(s) 108
BpuMI CCSGG 1 cut(s) 34
BsaJI CCNNGG 1 cut(s) 33
BsaXI ACNNNNNCTCC 2 cut(s) 262, 292
BseDI CCNNGG 1 cut(s) 33
BseGI GGATG 1 cut(s) 157
BseMII CTCAG 1 cut(s) 343
BseXI GCAGC 1 cut(s) 221
BshFI GGCC 1 cut(s) 50
BsiHKCI CYCGRG 1 cut(s) 73
BsiSI CCGG 1 cut(s) 33
BsnI GGCC 1 cut(s) 50
BsoBI CYCGRG 1 cut(s) 73
Bsp143I GATC 1 cut(s) 37
BspANI GGCC 1 cut(s) 50
BspCNI CTCAG 1 cut(s) 342
BspPI GGATC 1 cut(s) 45
BssECI CCNNGG 1 cut(s) 33
BssMI GATC 1 cut(s) 37
BstDEI CTNAG 2 cut(s) 329, 353
BstF5I GGATG 1 cut(s) 157
BstHHI GCGC 1 cut(s) 297
BstKTI GATC 1 cut(s) 40
BstMBI GATC 1 cut(s) 37
BstMWI GCNNNNNNNGC 1 cut(s) 98
BstSCI CCNGG 1 cut(s) 32
BstV1I GCAGC 1 cut(s) 221
BsuRI GGCC 1 cut(s) 50
BtsCI GGATG 1 cut(s) 157
CfoI GCGC 1 cut(s) 297
Csp6I GTAC 1 cut(s) 70
CviJI RGCY 3 cut(s) 50, 92, 212
CviKI_1 RGCY 3 cut(s) 50, 92, 212
CviQI GTAC 1 cut(s) 70
DdeI CTNAG 2 cut(s) 329, 353
DpnI GATC 1 cut(s) 39
DpnII GATC 1 cut(s) 37
EaeI YGGCCR 1 cut(s) 48
Eco88I CYCGRG 1 cut(s) 73
EcoRI GAATTC 1 cut(s) 236
FaiI YATR 2 cut(s) 47, 263
FalI AAGNNNNNCTT 2 cut(s) 236, 268
Fnu4HI GCNGC 1 cut(s) 210
FokI GGATG 1 cut(s) 164
Fsp4HI GCNGC 1 cut(s) 210
FspBI CTAG 1 cut(s) 93
GlaI GCGC 1 cut(s) 296
GluI GCNGC 1 cut(s) 210
GsuI CTGGAG 1 cut(s) 108
HaeIII GGCC 1 cut(s) 50
HapII CCGG 1 cut(s) 33
HhaI GCGC 1 cut(s) 297
Hin6I GCGC 1 cut(s) 295
HinP1I GCGC 1 cut(s) 295
HinfI GANTC 1 cut(s) 26
HpaII CCGG 1 cut(s) 33
HphI GGTGA 1 cut(s) 245
Hpy166II GTNNAC 1 cut(s) 194
Hpy188I TCNGA 1 cut(s) 332
Hpy188III TCNNGA 1 cut(s) 161
Hpy8I GTNNAC 1 cut(s) 194
Hpy99I CGWCG 1 cut(s) 344
HpyAV CCTTC 3 cut(s) 129, 142, 223
HpyCH4V TGCA 3 cut(s) 182, 209, 307
HpyF10VI GCNNNNNNNGC 1 cut(s) 98
HpyF3I CTNAG 2 cut(s) 329, 353
HspAI GCGC 1 cut(s) 295
Kzo9I GATC 1 cut(s) 37
LmnI GCTCC 1 cut(s) 89
LpnPI CCDG 3 cut(s) 46, 72, 202
Lsp1109I GCAGC 1 cut(s) 221
LweI GCATC 1 cut(s) 169
MaeI CTAG 1 cut(s) 93
MaeIII GTNAC 1 cut(s) 317
MalI GATC 1 cut(s) 39
MboI GATC 1 cut(s) 37
MlsI TGGCCA 1 cut(s) 50
MluCI AATT 2 cut(s) 139, 236
MluNI TGGCCA 1 cut(s) 50
MnlI CCTC 3 cut(s) 91, 138, 207
Mox20I TGGCCA 1 cut(s) 50
MscI TGGCCA 1 cut(s) 50
Msp20I TGGCCA 1 cut(s) 50
MspI CCGG 1 cut(s) 33
MspR9I CCNGG 1 cut(s) 34
MwoI GCNNNNNNNGC 1 cut(s) 98
NciI CCSGG 1 cut(s) 34
NdeII GATC 1 cut(s) 37
NmuCI GTSAC 1 cut(s) 317
PfeI GAWTC 1 cut(s) 26
PkrI GCNGC 1 cut(s) 211
RsaI GTAC 1 cut(s) 71
RsaNI GTAC 1 cut(s) 70
SatI GCNGC 1 cut(s) 210
Sau3AI GATC 1 cut(s) 37
ScrFI CCNGG 1 cut(s) 34
SetI ASST 4 cut(s) 13, 94, 199, 214
SfaNI GCATC 1 cut(s) 169
Sse9I AATT 2 cut(s) 139, 236
SspMI CTAG 1 cut(s) 93
StyD4I CCNGG 1 cut(s) 32
TaqI TCGA 1 cut(s) 339
TasI AATT 2 cut(s) 139, 236
TatI WGTACW 1 cut(s) 69
TfiI GAWTC 1 cut(s) 26
TseFI GTSAC 1 cut(s) 317
TseI GCWGC 1 cut(s) 209
Tsp45I GTSAC 1 cut(s) 317
TspDTI ATGAA 2 cut(s) 168, 264
XapI RAATTY 1 cut(s) 236
XspI CTAG 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.