Rh3DG098200

Survival protein SurE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0002356
Physical Location & Seq
Forward (+)
7788427 .. 7792857
4431 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG098200.1

Sequence Viewer

Length: 1005 bp
ATGGGGATTATTGCCATCCCTACAAAGCAGTCTCTCTGTATTCTTTCTTCTATTTCCAACGAGCACGTCTCCATGACGACCTCTCTGAAAAGCAGTTTCATGCCTCCGAGCTTGATCTCGAATCTTCAACAAGTTTTGGCTCTCAAAAGCGACGGTGCAGAGAAGCATGCTTCTGAACCAAACAAAGTTTCTTGTAATTGTTCTTCCTCTTCATGTTGCGCTTTGATGCCTTCTGAGGACACTAAAGACAAGCAGTGTCCAAAGCCAGTGGTTTTAGTCACAAATGGAGAGGGAATCGAGTCTCCTGGCCTCACATTTCTCGTCCAAGCTCTCCTTCTCGATTCTCATCTTGAGGTCTGCGTCTGCGCTCCTAAATCAGATAGATCAGTGGCTGGCCACTCTGTAACTGTTGGTGAGACCATTTCAGTGTCTTCTGCACAAATCAATGGCGCCACGGCTTTTGAAGTTTCCGGGACTCCTGCGGATTGTATCTCTTTAGCATTATCAGGGGCATTGTTCTCCAACTTTTCAAAGCCTGCTTTGGTAGTCAGTGGAATAAACAGAGGATCAAGTTCTGGAATCAACATGTTCTACTCGGGTGCTGTTGCTGGAGCTAGAGAGGCGTTGCTATGCGGTGTACCCTCTCTGTGCATATCAATGAATTGGAAGAAGGATGTAAGCTGTGAAAGTGATATGAAGGATGCAGCCACTGTGTGCTCACCGTTGATATGTGCAGCTGCAAAAAGCATCCAGGAGGGAGTTTTCCCCAAAAGTTGTTTACTCAATATTGAGATTCCTAGTTGTCCTTTGACAAATAAGGGCTTCAAAGTGACCAAGCAGAGTCAGTGGAGGTCCTCTTTGAGCTGGAAAGCTGTGTCAACAAACAAACATCCTCCCCCTGCAAATTTCATGTCCAATCAGCAAAGCCTTGGTATTCAACTAGCACAGCTCAGCCGCGAAGCTTCAATAGCTGTAAGTAGAACTAGTTTCTTTCTTGGCTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 ko00760 ko01100 ko01110 map00230 map00240 map00760 map01100 map01110
Pfam Domains
Protein Families
SurE

Protein Analysis

334

Amino Acids

35.02

Weight (kDa)

8.11

Isoelectric Point (pI)

49.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SurE PF01975 91 - 285 2e-50 Survival protein SurE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 449
AccII CGCG 1 cut(s) 957
AciI CCGC 3 cut(s) 482, 633, 955
AclWI GGATC 1 cut(s) 574
AcoI YGGCCR 1 cut(s) 394
AcsI RAATTY 1 cut(s) 904
AcyI GRCGYC 1 cut(s) 450
AdeI CACNNNGTG 1 cut(s) 714
AfaI GTAC 1 cut(s) 639
AflIII ACRYGT 1 cut(s) 585
AgsI TTSAA 6 cut(s) 128, 464, 531, 826, 938, 966
AhlI ACTAGT 1 cut(s) 983
AjiI CACGTC 1 cut(s) 67
AjnI CCWGG 2 cut(s) 304, 750
AjuI GAANNNNNNNTTGG 4 cut(s) 172, 204, 318, 350
Alw21I GWGCWC 2 cut(s) 66, 719
Alw26I GTCTC 4 cut(s) 36, 73, 306, 410
AlwI GGATC 1 cut(s) 574
AlwNI CAGNNNCTG 2 cut(s) 392, 710
Ama87I CYCGRG 1 cut(s) 595
AoxI GGCC 2 cut(s) 307, 394
ApeKI GCWGC 3 cut(s) 704, 734, 737
ApoI RAATTY 1 cut(s) 904
ArsI GACNNNNNNTTYG 2 cut(s) 896, 928
AspLEI GCGC 3 cut(s) 221, 368, 452
AspS9I GGNCC 1 cut(s) 852
AsuC2I CCSGG 1 cut(s) 472
AsuHPI GGTGA 2 cut(s) 425, 711
AvaI CYCGRG 1 cut(s) 595
AvaII GGWCC 1 cut(s) 852
BalI TGGCCA 1 cut(s) 396
BanI GGYRCC 1 cut(s) 449
BarI GAAGNNNNNNTAC 4 cut(s) 31, 63, 187, 219
BbsI GAAGAC 1 cut(s) 423
Bbv12I GWGCWC 2 cut(s) 66, 719
BbvI GCAGC 3 cut(s) 716, 724, 746
BccI CCATC 1 cut(s) 23
BceAI ACGGC 1 cut(s) 471
BciT130I CCWGG 2 cut(s) 306, 752
BcnI CCSGG 1 cut(s) 472
BcoDI GTCTC 4 cut(s) 36, 73, 306, 410
BcuI ACTAGT 1 cut(s) 983
BfaI CTAG 4 cut(s) 615, 798, 941, 984
BfoI RGCGCY 1 cut(s) 453
BisI GCNGC 4 cut(s) 705, 735, 738, 955
BlpI GCTNAGC 1 cut(s) 950
BlsI GCNGC 4 cut(s) 706, 736, 739, 956
Bme1390I CCNGG 3 cut(s) 306, 472, 752
Bme18I GGWCC 1 cut(s) 852
BmeT110I CYCGRG 1 cut(s) 595
BmgBI CACGTC 1 cut(s) 67
BmgT120I GGNCC 1 cut(s) 852
BmiI GGNNCC 1 cut(s) 451
BmrFI CCNGG 3 cut(s) 306, 472, 752
BmsI GCATC 3 cut(s) 216, 691, 756
BpiI GAAGAC 1 cut(s) 423
BplI GAGNNNNNCTC 2 cut(s) 53, 85
BpmI CTGGAG 1 cut(s) 630
Bpu1102I GCTNAGC 1 cut(s) 950
BpuEI CTTGAG 1 cut(s) 371
BpuMI CCSGG 1 cut(s) 472
BsaBI GATNNNNATC 1 cut(s) 345
BsaHI GRCGYC 1 cut(s) 450
BsaI GGTCTC 1 cut(s) 410
BsaJI CCNNGG 2 cut(s) 453, 928
Bse1I ACTGG 1 cut(s) 266
Bse8I GATNNNNATC 1 cut(s) 345
BseBI CCWGG 2 cut(s) 306, 752
BseDI CCNNGG 2 cut(s) 453, 928
BseGI GGATG 5 cut(s) 15, 679, 706, 747, 889
BseJI GATNNNNATC 1 cut(s) 345
BseMII CTCAG 2 cut(s) 225, 964
BseNI ACTGG 1 cut(s) 266
BseXI GCAGC 3 cut(s) 716, 724, 746
BsgI GTGCAG 3 cut(s) 177, 420, 753
Bsh1236I CGCG 1 cut(s) 957
BshFI GGCC 2 cut(s) 309, 396
BshNI GGYRCC 1 cut(s) 449
BsiHKAI GWGCWC 2 cut(s) 66, 719
BsiHKCI CYCGRG 1 cut(s) 595
BsiSI CCGG 1 cut(s) 471
BslFI GGGAC 1 cut(s) 487
BsmAI GTCTC 4 cut(s) 36, 73, 306, 410
BsmBI CGTCTC 1 cut(s) 73
BsmFI GGGAC 1 cut(s) 487
BsnI GGCC 2 cut(s) 309, 396
Bso31I GGTCTC 1 cut(s) 410
BsoBI CYCGRG 1 cut(s) 595
Bsp1286I GDGCHC 2 cut(s) 66, 719
Bsp143I GATC 3 cut(s) 114, 383, 566
Bsp1720I GCTNAGC 1 cut(s) 950
BspACI CCGC 3 cut(s) 482, 633, 955
BspANI GGCC 2 cut(s) 309, 396
BspCNI CTCAG 2 cut(s) 226, 963
BspFNI CGCG 1 cut(s) 957
BspLI GGNNCC 1 cut(s) 451
BspPI GGATC 1 cut(s) 574
BspT107I GGYRCC 1 cut(s) 449
BspTNI GGTCTC 1 cut(s) 410
BsrI ACTGG 1 cut(s) 266
BssECI CCNNGG 2 cut(s) 453, 928
BssMI GATC 3 cut(s) 114, 383, 566
BssNI GRCGYC 1 cut(s) 450
BssT1I CCWWGG 1 cut(s) 928
Bst2UI CCWGG 2 cut(s) 306, 752
Bst4CI ACNGT 4 cut(s) 155, 409, 712, 723
Bst6I CTCTTC 1 cut(s) 214
BstACI GRCGYC 1 cut(s) 450
BstC8I GCNNGC 3 cut(s) 168, 394, 537
BstDEI CTNAG 2 cut(s) 234, 950
BstDSI CCRYGG 1 cut(s) 453
BstF5I GGATG 5 cut(s) 15, 679, 706, 747, 889
BstFNI CGCG 1 cut(s) 957
BstH2I RGCGCY 1 cut(s) 453
BstHHI GCGC 3 cut(s) 221, 368, 452
BstKTI GATC 3 cut(s) 117, 386, 569
BstMAI GTCTC 4 cut(s) 36, 73, 306, 410
BstMBI GATC 3 cut(s) 114, 383, 566
BstMWI GCNNNNNNNGC 2 cut(s) 620, 968
BstNI CCWGG 2 cut(s) 306, 752
BstNSI RCATGY 2 cut(s) 170, 589
BstSCI CCNGG 3 cut(s) 304, 470, 750
BstUI CGCG 1 cut(s) 957
BstV1I GCAGC 3 cut(s) 716, 724, 746
BstV2I GAAGAC 1 cut(s) 423
BsuRI GGCC 2 cut(s) 309, 396
BtgI CCRYGG 1 cut(s) 453
BtrI CACGTC 1 cut(s) 67
BtsCI GGATG 5 cut(s) 15, 679, 706, 747, 889
BtsI GCAGTG 1 cut(s) 260
BtsIMutI CAGTG 7 cut(s) 260, 273, 393, 432, 556, 708, 851
Cac8I GCNNGC 3 cut(s) 168, 394, 537
CaiI CAGNNNCTG 2 cut(s) 392, 710
CfoI GCGC 3 cut(s) 221, 368, 452
Cfr13I GGNCC 1 cut(s) 852
CseI GACGC 1 cut(s) 349
Csp6I GTAC 1 cut(s) 638
CspCI CAANNNNNGTGG 4 cut(s) 249, 284, 442, 477
CviAII CATG 6 cut(s) 73, 100, 167, 213, 586, 910
CviQI GTAC 1 cut(s) 638
DdeI CTNAG 2 cut(s) 234, 950
DinI GGCGCC 1 cut(s) 451
DpnI GATC 3 cut(s) 116, 385, 568
DpnII GATC 3 cut(s) 114, 383, 566
DraIII CACNNNGTG 1 cut(s) 714
EaeI YGGCCR 1 cut(s) 394
Eam1104I CTCTTC 1 cut(s) 214
EarI CTCTTC 1 cut(s) 214
Eco130I CCWWGG 1 cut(s) 928
Eco31I GGTCTC 1 cut(s) 410
Eco47I GGWCC 1 cut(s) 852
Eco88I CYCGRG 1 cut(s) 595
EcoO109I RGGNCCY 1 cut(s) 852
EcoRII CCWGG 2 cut(s) 304, 750
EcoT14I CCWWGG 1 cut(s) 928
EgeI GGCGCC 1 cut(s) 451
EheI GGCGCC 1 cut(s) 451
ErhI CCWWGG 1 cut(s) 928
Esp3I CGTCTC 1 cut(s) 73
FaeI CATG 6 cut(s) 76, 103, 170, 216, 589, 913
FalI AAGNNNNNCTT 2 cut(s) 318, 350
FaqI GGGAC 1 cut(s) 487
FatI CATG 6 cut(s) 72, 99, 166, 212, 585, 909
Fnu4HI GCNGC 4 cut(s) 705, 735, 738, 955
FokI GGATG 5 cut(s) 2, 686, 713, 734, 876
Fsp4HI GCNGC 4 cut(s) 705, 735, 738, 955
FspBI CTAG 4 cut(s) 615, 798, 941, 984
GlaI GCGC 3 cut(s) 220, 367, 451
GluI GCNGC 4 cut(s) 705, 735, 738, 955
GsuI CTGGAG 1 cut(s) 630
HaeII RGCGCY 1 cut(s) 453
HaeIII GGCC 2 cut(s) 309, 396
HapII CCGG 1 cut(s) 471
HgaI GACGC 1 cut(s) 349
HhaI GCGC 3 cut(s) 221, 368, 452
Hin1I GRCGYC 1 cut(s) 450
Hin1II CATG 6 cut(s) 76, 103, 170, 216, 589, 913
Hin6I GCGC 3 cut(s) 219, 366, 450
HinP1I GCGC 3 cut(s) 219, 366, 450
HincII GTYRAC 1 cut(s) 879
HindII GTYRAC 1 cut(s) 879
HindIII AAGCTT 1 cut(s) 960
HinfI GANTC 8 cut(s) 121, 294, 299, 341, 475, 579, 793, 841
HpaII CCGG 1 cut(s) 471
HphI GGTGA 2 cut(s) 425, 711
Hpy166II GTNNAC 3 cut(s) 638, 779, 879
Hpy188I TCNGA 5 cut(s) 87, 108, 175, 235, 379
Hpy188III TCNNGA 4 cut(s) 118, 338, 350, 576
Hpy8I GTNNAC 3 cut(s) 638, 779, 879
Hpy99I CGWCG 1 cut(s) 155
HpyAV CCTTC 4 cut(s) 240, 344, 664, 691
HpyCH4III ACNGT 4 cut(s) 155, 409, 712, 723
HpyCH4IV ACGT 1 cut(s) 66
HpyCH4V TGCA 7 cut(s) 158, 437, 651, 704, 734, 740, 902
HpyF10VI GCNNNNNNNGC 2 cut(s) 620, 968
HpyF3I CTNAG 2 cut(s) 234, 950
HpySE526I ACGT 1 cut(s) 66
Hsp92I GRCGYC 1 cut(s) 450
Hsp92II CATG 6 cut(s) 76, 103, 170, 216, 589, 913
HspAI GCGC 3 cut(s) 219, 366, 450
KasI GGCGCC 1 cut(s) 449
Kzo9I GATC 3 cut(s) 114, 383, 566
LmnI GCTCC 2 cut(s) 373, 611
Lsp1109I GCAGC 3 cut(s) 716, 724, 746
LweI GCATC 3 cut(s) 216, 691, 756
MaeI CTAG 4 cut(s) 615, 798, 941, 984
MaeII ACGT 1 cut(s) 66
MaeIII GTNAC 3 cut(s) 277, 403, 829
MalI GATC 3 cut(s) 116, 385, 568
MboI GATC 3 cut(s) 114, 383, 566
MboII GAAGA 6 cut(s) 39, 116, 195, 201, 423, 679
MhlI GDGCHC 2 cut(s) 66, 719
MlsI TGGCCA 1 cut(s) 396
MluCI AATT 3 cut(s) 196, 661, 904
MluNI TGGCCA 1 cut(s) 396
Mly113I GGCGCC 1 cut(s) 450
MlyI GAGTC 3 cut(s) 308, 469, 850
MmeI TCCRAC 2 cut(s) 81, 546
Mox20I TGGCCA 1 cut(s) 396
MscI TGGCCA 1 cut(s) 396
MseI TTAA 1 cut(s) 1003
MslI CAYNNNNRTG 2 cut(s) 425, 656
Msp20I TGGCCA 1 cut(s) 396
MspA1I CMGCKG 1 cut(s) 737
MspI CCGG 1 cut(s) 471
MspR9I CCNGG 3 cut(s) 306, 472, 752
MvaI CCWGG 2 cut(s) 306, 752
MvnI CGCG 1 cut(s) 957
MwoI GCNNNNNNNGC 2 cut(s) 620, 968
NarI GGCGCC 1 cut(s) 450
NciI CCSGG 1 cut(s) 472
NdeII GATC 3 cut(s) 114, 383, 566
NlaIII CATG 6 cut(s) 76, 103, 170, 216, 589, 913
NlaIV GGNNCC 1 cut(s) 451
NmuCI GTSAC 2 cut(s) 277, 829
NspI RCATGY 2 cut(s) 170, 589
PaeI GCATGC 1 cut(s) 170
PciI ACATGT 1 cut(s) 585
PfeI GAWTC 5 cut(s) 121, 294, 341, 579, 793
PfoI TCCNGGA 2 cut(s) 470, 750
PkrI GCNGC 4 cut(s) 706, 736, 739, 956
PleI GAGTC 3 cut(s) 307, 469, 849
PluTI GGCGCC 1 cut(s) 453
PpsI GAGTC 3 cut(s) 307, 469, 849
PpuMI RGGWCCY 1 cut(s) 852
PscI ACATGT 1 cut(s) 585
Psp5II RGGWCCY 1 cut(s) 852
Psp6I CCWGG 2 cut(s) 304, 750
PspGI CCWGG 2 cut(s) 304, 750
PspN4I GGNNCC 1 cut(s) 451
PspPI GGNCC 1 cut(s) 852
PspPPI RGGWCCY 1 cut(s) 852
PstNI CAGNNNCTG 2 cut(s) 392, 710
PvuII CAGCTG 1 cut(s) 737
RsaI GTAC 1 cut(s) 639
RsaNI GTAC 1 cut(s) 638
RseI CAYNNNNRTG 2 cut(s) 425, 656
SaqAI TTAA 1 cut(s) 1003
SatI GCNGC 4 cut(s) 705, 735, 738, 955
Sau3AI GATC 3 cut(s) 114, 383, 566
Sau96I GGNCC 1 cut(s) 852
SchI GAGTC 3 cut(s) 308, 469, 850
ScrFI CCNGG 3 cut(s) 306, 472, 752
SduI GDGCHC 2 cut(s) 66, 719
SfaNI GCATC 3 cut(s) 216, 691, 756
SfoI GGCGCC 1 cut(s) 451
SinI GGWCC 1 cut(s) 852
SmiMI CAYNNNNRTG 2 cut(s) 425, 656
SmlI CTYRAG 1 cut(s) 350
SmoI CTYRAG 1 cut(s) 350
SpeI ACTAGT 1 cut(s) 983
SphI GCATGC 1 cut(s) 170
Sse9I AATT 3 cut(s) 196, 661, 904
SsiI CCGC 3 cut(s) 482, 633, 955
SspDI GGCGCC 1 cut(s) 449
SspI AATATT 1 cut(s) 787
SspMI CTAG 4 cut(s) 615, 798, 941, 984
StyD4I CCNGG 3 cut(s) 304, 470, 750
StyI CCWWGG 1 cut(s) 928
TaaI ACNGT 4 cut(s) 155, 409, 712, 723
TaiI ACGT 1 cut(s) 69
TaqI TCGA 3 cut(s) 119, 297, 339
TasI AATT 3 cut(s) 196, 661, 904
TauI GCSGC 1 cut(s) 957
TfiI GAWTC 5 cut(s) 121, 294, 341, 579, 793
Tru1I TTAA 1 cut(s) 1003
Tru9I TTAA 1 cut(s) 1003
TscAI CASTG 7 cut(s) 260, 273, 393, 432, 556, 715, 851
TseFI GTSAC 2 cut(s) 277, 829
TseI GCWGC 3 cut(s) 704, 734, 737
Tsp45I GTSAC 2 cut(s) 277, 829
TspDTI ATGAA 5 cut(s) 88, 201, 674, 710, 898
TspRI CASTG 7 cut(s) 260, 273, 393, 432, 556, 715, 851
VpaK11BI GGWCC 1 cut(s) 852
XapI RAATTY 1 cut(s) 904
XceI RCATGY 2 cut(s) 170, 589
XspI CTAG 4 cut(s) 615, 798, 941, 984
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.