RchiOBHm_Chr2g0093661

Survival protein SurE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0002356
Physical Location & Seq
Forward (+)
6886041 .. 6890245
4205 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46871

Sequence Viewer

Length: 1161 bp
ATGCCTCCGAGCTTGATCTCGAATCTTCAACAAGTTTTGGCTCTCAAAAGCGACGGTGCAGAGAAGCATGCTTCTGAACCAAACAAAGTTTCTTGTAATTCTTCTTCTTCCTCTTCATGTTGCGCTTTGATGCCTTCTGAGGACACTAAAGACAAGCACTGTCCAAAGCCAGTGGTTTTAGTCACAAATGGAGAGAGAATCGAGTCTCCTGGCCTCACATTTCTCGTCCAAGCTCTCCTTCTCGATTCTCATCTTGAGGTCTGCGTCTGCGCTCCTAAATCAGATAGATCAGTGGCTGGCCACTCTGTAACTGTTGGTGAGACAATTTCAGTGTCTTCTGCACAAATCAATGGTGCCACGGCTTTTGAAGTTTCCGGGACTCCTGCGGATTGTGTCTCTTTAGCATTATCAGGGGCATTGTTCTCCAACTTTTCAAAGCCTGCTTTGGTAGTCAGTGGAATAAACAGAGGATCAAGTTCTGGAATCAACATGTTCTACTCGGGTGCTGTTGCTGGAGCTAGAGAGGCGTTGCTATGCGGTGTACCCTCTCTGTGCATATCAATGAATTGGAAGAAGGATGTAAGCTGTGAAAGTGATATGAAGGATGCAGCCACTGTGTGCTCACCGTTGATATGTGCAGCTGTAAAAAGCATCCAGGAGGGAGTTTTCCCCAAAAGTTGTTTACTCAATATTGAGATTCCTAGTTGTCCTTTGACAAATAAGGGCTTCAAAGTGACCAAGCAGAGTCAGTGGAGGTCCTCTTTGAGCTGGAAAGCTGTGTCAACAAACAAACATCCTCCCCCTGCAAATTTCATGTCCAATCAGCAAAGCCTTGGTATTCAACTAGCACAGCTCAGCCGCGAAGCTTCAATAGCTGGTGCAGCTCGCCGCTTGAACTCTCAGCGCAAGACTGTAGAGGTTGAATCGGTTGGTGTAGCCAGAAAAATGAGCTCCCAAAAAACAGTAAAATTCTTCCGTTTAGAGTTCTTAGAGGAGCGGCAGGAATATGTAGATGAAGATCTAGATATCAGAGCACTTGAAGATGGATTTGTTGCGATTACTCCGATTTGCTTATCTCCATCTGTTCAATCGGAAATTCAAACGTCAGTGTCGAATTGGATTGCTGGAGCAGTACTTTCGAACAACCGGTTGGCATTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 ko00760 ko01100 ko01110 map00230 map00240 map00760 map01100 map01110
Pfam Domains
Protein Families
SurE

Protein Analysis

386

Amino Acids

41.04

Weight (kDa)

7.44

Isoelectric Point (pI)

52.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SurE PF01975 59 - 253 5e-49 Survival protein SurE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 353
AccBSI CCGCTC 1 cut(s) 997
AccII CGCG 1 cut(s) 861
AciI CCGC 5 cut(s) 386, 537, 859, 889, 997
AclWI GGATC 1 cut(s) 478
AcoI YGGCCR 1 cut(s) 298
AcsI RAATTY 3 cut(s) 808, 968, 1095
AdeI CACNNNGTG 1 cut(s) 618
AfaI GTAC 2 cut(s) 543, 1134
AflIII ACRYGT 1 cut(s) 489
AgeI ACCGGT 1 cut(s) 1146
AjnI CCWGG 2 cut(s) 208, 654
AjuI GAANNNNNNNTTGG 5 cut(s) 73, 105, 222, 254, 1133
Alw21I GWGCWC 3 cut(s) 623, 953, 1036
Alw26I GTCTC 3 cut(s) 210, 314, 400
AlwI GGATC 1 cut(s) 478
AlwNI CAGNNNCTG 2 cut(s) 296, 614
Ama87I CYCGRG 1 cut(s) 499
AoxI GGCC 2 cut(s) 211, 298
ApeKI GCWGC 3 cut(s) 608, 638, 881
ApoI RAATTY 3 cut(s) 808, 968, 1095
ArsI GACNNNNNNTTYG 2 cut(s) 800, 832
AsiGI ACCGGT 1 cut(s) 1146
AspLEI GCGC 3 cut(s) 125, 272, 906
AspS9I GGNCC 1 cut(s) 756
AsuC2I CCSGG 1 cut(s) 376
AsuHPI GGTGA 2 cut(s) 329, 615
AsuII TTCGAA 1 cut(s) 1139
AvaI CYCGRG 1 cut(s) 499
AvaII GGWCC 1 cut(s) 756
BalI TGGCCA 1 cut(s) 300
BanI GGYRCC 1 cut(s) 353
BanII GRGCYC 1 cut(s) 953
BarI GAAGNNNNNNTAC 2 cut(s) 88, 120
BbsI GAAGAC 1 cut(s) 327
Bbv12I GWGCWC 3 cut(s) 623, 953, 1036
BbvI GCAGC 3 cut(s) 620, 650, 893
BccI CCATC 2 cut(s) 1037, 1087
BceAI ACGGC 1 cut(s) 375
BcgI CGANNNNNNTGC 2 cut(s) 1119, 1153
BciT130I CCWGG 2 cut(s) 210, 656
BcnI CCSGG 1 cut(s) 376
BcoDI GTCTC 3 cut(s) 210, 314, 400
BfaI CTAG 4 cut(s) 519, 702, 845, 1022
BfmI CTRYAG 1 cut(s) 912
BglII AGATCT 1 cut(s) 1018
BisI GCNGC 6 cut(s) 609, 639, 859, 882, 889, 998
BlpI GCTNAGC 1 cut(s) 854
BlsI GCNGC 6 cut(s) 610, 640, 860, 883, 890, 999
BmcAI AGTACT 1 cut(s) 1134
Bme1390I CCNGG 3 cut(s) 210, 376, 656
Bme18I GGWCC 1 cut(s) 756
BmeT110I CYCGRG 1 cut(s) 499
BmgT120I GGNCC 1 cut(s) 756
BmiI GGNNCC 1 cut(s) 355
BmrFI CCNGG 3 cut(s) 210, 376, 656
BmsI GCATC 3 cut(s) 120, 595, 660
BpiI GAAGAC 1 cut(s) 327
BpmI CTGGAG 2 cut(s) 534, 1146
Bpu1102I GCTNAGC 1 cut(s) 854
Bpu14I TTCGAA 1 cut(s) 1139
BpuEI CTTGAG 1 cut(s) 275
BpuMI CCSGG 1 cut(s) 376
BsaBI GATNNNNATC 2 cut(s) 249, 1017
BsaJI CCNNGG 2 cut(s) 357, 832
BsaWI WCCGGW 1 cut(s) 1146
Bse118I RCCGGY 1 cut(s) 1146
Bse1I ACTGG 1 cut(s) 170
Bse8I GATNNNNATC 2 cut(s) 249, 1017
BseBI CCWGG 2 cut(s) 210, 656
BseDI CCNNGG 2 cut(s) 357, 832
BseGI GGATG 4 cut(s) 583, 610, 651, 793
BseJI GATNNNNATC 2 cut(s) 249, 1017
BseMII CTCAG 3 cut(s) 129, 868, 914
BseNI ACTGG 1 cut(s) 170
BseRI GAGGAG 1 cut(s) 1007
BseXI GCAGC 3 cut(s) 620, 650, 893
BsgI GTGCAG 4 cut(s) 78, 324, 657, 900
Bsh1236I CGCG 1 cut(s) 861
BshFI GGCC 2 cut(s) 213, 300
BshNI GGYRCC 1 cut(s) 353
BshTI ACCGGT 1 cut(s) 1146
BsiHKAI GWGCWC 3 cut(s) 623, 953, 1036
BsiHKCI CYCGRG 1 cut(s) 499
BsiSI CCGG 2 cut(s) 375, 1147
BslFI GGGAC 1 cut(s) 391
BsmAI GTCTC 3 cut(s) 210, 314, 400
BsmFI GGGAC 1 cut(s) 391
BsnI GGCC 2 cut(s) 213, 300
BsoBI CYCGRG 1 cut(s) 499
Bsp119I TTCGAA 1 cut(s) 1139
Bsp1286I GDGCHC 3 cut(s) 623, 953, 1036
Bsp143I GATC 4 cut(s) 15, 287, 470, 1018
Bsp1720I GCTNAGC 1 cut(s) 854
BspACI CCGC 5 cut(s) 386, 537, 859, 889, 997
BspANI GGCC 2 cut(s) 213, 300
BspCNI CTCAG 3 cut(s) 130, 867, 913
BspFNI CGCG 1 cut(s) 861
BspLI GGNNCC 1 cut(s) 355
BspPI GGATC 1 cut(s) 478
BspT104I TTCGAA 1 cut(s) 1139
BspT107I GGYRCC 1 cut(s) 353
BsrBI CCGCTC 1 cut(s) 997
BsrFI RCCGGY 1 cut(s) 1146
BsrI ACTGG 1 cut(s) 170
BssAI RCCGGY 1 cut(s) 1146
BssECI CCNNGG 2 cut(s) 357, 832
BssMI GATC 4 cut(s) 15, 287, 470, 1018
BssT1I CCWWGG 1 cut(s) 832
Bst2UI CCWGG 2 cut(s) 210, 656
Bst4CI ACNGT 7 cut(s) 56, 161, 313, 616, 627, 913, 964
Bst6I CTCTTC 1 cut(s) 118
BstBI TTCGAA 1 cut(s) 1139
BstC8I GCNNGC 4 cut(s) 69, 298, 441, 886
BstDEI CTNAG 4 cut(s) 138, 854, 900, 988
BstDSI CCRYGG 1 cut(s) 357
BstF5I GGATG 4 cut(s) 583, 610, 651, 793
BstFNI CGCG 1 cut(s) 861
BstHHI GCGC 3 cut(s) 125, 272, 906
BstKTI GATC 4 cut(s) 18, 290, 473, 1021
BstMAI GTCTC 3 cut(s) 210, 314, 400
BstMBI GATC 4 cut(s) 15, 287, 470, 1018
BstMWI GCNNNNNNNGC 3 cut(s) 524, 872, 881
BstNI CCWGG 2 cut(s) 210, 656
BstNSI RCATGY 2 cut(s) 71, 493
BstSCI CCNGG 3 cut(s) 208, 374, 654
BstSFI CTRYAG 1 cut(s) 912
BstUI CGCG 1 cut(s) 861
BstV1I GCAGC 3 cut(s) 620, 650, 893
BstV2I GAAGAC 1 cut(s) 327
BstX2I RGATCY 1 cut(s) 1018
BstYI RGATCY 1 cut(s) 1018
BsuRI GGCC 2 cut(s) 213, 300
BtgI CCRYGG 1 cut(s) 357
BtsCI GGATG 4 cut(s) 583, 610, 651, 793
BtsIMutI CAGTG 8 cut(s) 157, 177, 297, 336, 460, 612, 755, 1113
Cac8I GCNNGC 4 cut(s) 69, 298, 441, 886
CaiI CAGNNNCTG 2 cut(s) 296, 614
CfoI GCGC 3 cut(s) 125, 272, 906
Cfr10I RCCGGY 1 cut(s) 1146
Cfr13I GGNCC 1 cut(s) 756
CseI GACGC 1 cut(s) 253
Csp6I GTAC 2 cut(s) 542, 1133
CspAI ACCGGT 1 cut(s) 1146
CspCI CAANNNNNGTGG 4 cut(s) 153, 188, 346, 381
CviAII CATG 4 cut(s) 68, 117, 490, 814
CviQI GTAC 2 cut(s) 542, 1133
DdeI CTNAG 4 cut(s) 138, 854, 900, 988
DpnI GATC 4 cut(s) 17, 289, 472, 1020
DpnII GATC 4 cut(s) 15, 287, 470, 1018
DraIII CACNNNGTG 1 cut(s) 618
EaeI YGGCCR 1 cut(s) 298
Eam1104I CTCTTC 1 cut(s) 118
EarI CTCTTC 1 cut(s) 118
Ecl136II GAGCTC 1 cut(s) 951
Eco130I CCWWGG 1 cut(s) 832
Eco24I GRGCYC 1 cut(s) 953
Eco32I GATATC 1 cut(s) 1027
Eco47I GGWCC 1 cut(s) 756
Eco53kI GAGCTC 1 cut(s) 951
Eco88I CYCGRG 1 cut(s) 499
EcoICRI GAGCTC 1 cut(s) 951
EcoO109I RGGNCCY 1 cut(s) 756
EcoRII CCWGG 2 cut(s) 208, 654
EcoRV GATATC 1 cut(s) 1027
EcoT14I CCWWGG 1 cut(s) 832
EcoT38I GRGCYC 1 cut(s) 953
ErhI CCWWGG 1 cut(s) 832
FaeI CATG 4 cut(s) 71, 120, 493, 817
FalI AAGNNNNNCTT 2 cut(s) 222, 254
FaqI GGGAC 1 cut(s) 391
FatI CATG 4 cut(s) 67, 116, 489, 813
Fnu4HI GCNGC 6 cut(s) 609, 639, 859, 882, 889, 998
FokI GGATG 4 cut(s) 590, 617, 638, 780
FriOI GRGCYC 1 cut(s) 953
Fsp4HI GCNGC 6 cut(s) 609, 639, 859, 882, 889, 998
FspBI CTAG 4 cut(s) 519, 702, 845, 1022
GlaI GCGC 3 cut(s) 124, 271, 905
GluI GCNGC 6 cut(s) 609, 639, 859, 882, 889, 998
GsuI CTGGAG 2 cut(s) 534, 1146
HaeIII GGCC 2 cut(s) 213, 300
HapII CCGG 2 cut(s) 375, 1147
HgaI GACGC 1 cut(s) 253
HhaI GCGC 3 cut(s) 125, 272, 906
Hin1II CATG 4 cut(s) 71, 120, 493, 817
Hin6I GCGC 3 cut(s) 123, 270, 904
HinP1I GCGC 3 cut(s) 123, 270, 904
HincII GTYRAC 1 cut(s) 783
HindII GTYRAC 1 cut(s) 783
HindIII AAGCTT 1 cut(s) 864
HinfI GANTC 9 cut(s) 22, 198, 203, 245, 379, 483, 697, 745, 923
HpaII CCGG 2 cut(s) 375, 1147
HphI GGTGA 2 cut(s) 329, 615
Hpy166II GTNNAC 3 cut(s) 542, 683, 783
Hpy188I TCNGA 7 cut(s) 9, 76, 139, 283, 1031, 1065, 1093
Hpy188III TCNNGA 5 cut(s) 19, 242, 254, 480, 1022
Hpy8I GTNNAC 3 cut(s) 542, 683, 783
Hpy99I CGWCG 1 cut(s) 56
HpyAV CCTTC 4 cut(s) 144, 248, 568, 595
HpyCH4III ACNGT 7 cut(s) 56, 161, 313, 616, 627, 913, 964
HpyCH4IV ACGT 1 cut(s) 1103
HpyCH4V TGCA 7 cut(s) 59, 341, 555, 608, 638, 806, 881
HpyF10VI GCNNNNNNNGC 3 cut(s) 524, 872, 881
HpyF3I CTNAG 4 cut(s) 138, 854, 900, 988
HpySE526I ACGT 1 cut(s) 1103
Hsp92II CATG 4 cut(s) 71, 120, 493, 817
HspAI GCGC 3 cut(s) 123, 270, 904
Kzo9I GATC 4 cut(s) 15, 287, 470, 1018
LmnI GCTCC 5 cut(s) 277, 515, 956, 994, 1127
Lsp1109I GCAGC 3 cut(s) 620, 650, 893
LweI GCATC 3 cut(s) 120, 595, 660
MaeI CTAG 4 cut(s) 519, 702, 845, 1022
MaeII ACGT 1 cut(s) 1103
MaeIII GTNAC 3 cut(s) 181, 307, 733
MalI GATC 4 cut(s) 17, 289, 472, 1020
MbiI CCGCTC 1 cut(s) 997
MboI GATC 4 cut(s) 15, 287, 470, 1018
MflI RGATCY 1 cut(s) 1018
MhlI GDGCHC 3 cut(s) 623, 953, 1036
MlsI TGGCCA 1 cut(s) 300
MluCI AATT 7 cut(s) 97, 324, 565, 808, 968, 1095, 1114
MluNI TGGCCA 1 cut(s) 300
MlyI GAGTC 3 cut(s) 212, 373, 754
MmeI TCCRAC 1 cut(s) 450
Mox20I TGGCCA 1 cut(s) 300
MscI TGGCCA 1 cut(s) 300
MslI CAYNNNNRTG 1 cut(s) 560
Msp20I TGGCCA 1 cut(s) 300
MspA1I CMGCKG 1 cut(s) 641
MspI CCGG 2 cut(s) 375, 1147
MspR9I CCNGG 3 cut(s) 210, 376, 656
MvaI CCWGG 2 cut(s) 210, 656
MvnI CGCG 1 cut(s) 861
MwoI GCNNNNNNNGC 3 cut(s) 524, 872, 881
NciI CCSGG 1 cut(s) 376
NdeII GATC 4 cut(s) 15, 287, 470, 1018
NlaIII CATG 4 cut(s) 71, 120, 493, 817
NlaIV GGNNCC 1 cut(s) 355
NmuCI GTSAC 2 cut(s) 181, 733
NspI RCATGY 2 cut(s) 71, 493
NspV TTCGAA 1 cut(s) 1139
PaeI GCATGC 1 cut(s) 71
PciI ACATGT 1 cut(s) 489
PcsI WCGNNNNNNNCGW 1 cut(s) 1109
PfeI GAWTC 6 cut(s) 22, 198, 245, 483, 697, 923
PfoI TCCNGGA 2 cut(s) 374, 654
PinAI ACCGGT 1 cut(s) 1146
PkrI GCNGC 6 cut(s) 610, 640, 860, 883, 890, 999
PleI GAGTC 3 cut(s) 211, 373, 753
PpsI GAGTC 3 cut(s) 211, 373, 753
PpuMI RGGWCCY 1 cut(s) 756
PscI ACATGT 1 cut(s) 489
Psp124BI GAGCTC 1 cut(s) 953
Psp5II RGGWCCY 1 cut(s) 756
Psp6I CCWGG 2 cut(s) 208, 654
PspGI CCWGG 2 cut(s) 208, 654
PspN4I GGNNCC 1 cut(s) 355
PspPI GGNCC 1 cut(s) 756
PspPPI RGGWCCY 1 cut(s) 756
PstNI CAGNNNCTG 2 cut(s) 296, 614
PsuI RGATCY 1 cut(s) 1018
PvuII CAGCTG 1 cut(s) 641
RsaI GTAC 2 cut(s) 543, 1134
RsaNI GTAC 2 cut(s) 542, 1133
RseI CAYNNNNRTG 1 cut(s) 560
SacI GAGCTC 1 cut(s) 953
SatI GCNGC 6 cut(s) 609, 639, 859, 882, 889, 998
Sau3AI GATC 4 cut(s) 15, 287, 470, 1018
Sau96I GGNCC 1 cut(s) 756
ScaI AGTACT 1 cut(s) 1134
SchI GAGTC 3 cut(s) 212, 373, 754
ScrFI CCNGG 3 cut(s) 210, 376, 656
SduI GDGCHC 3 cut(s) 623, 953, 1036
SfaNI GCATC 3 cut(s) 120, 595, 660
SfcI CTRYAG 1 cut(s) 912
SfuI TTCGAA 1 cut(s) 1139
SinI GGWCC 1 cut(s) 756
SmiMI CAYNNNNRTG 1 cut(s) 560
SmlI CTYRAG 1 cut(s) 254
SmoI CTYRAG 1 cut(s) 254
SphI GCATGC 1 cut(s) 71
Sse9I AATT 7 cut(s) 97, 324, 565, 808, 968, 1095, 1114
SsiI CCGC 5 cut(s) 386, 537, 859, 889, 997
SspI AATATT 1 cut(s) 691
SspMI CTAG 4 cut(s) 519, 702, 845, 1022
SstI GAGCTC 1 cut(s) 953
StyD4I CCNGG 3 cut(s) 208, 374, 654
StyI CCWWGG 1 cut(s) 832
TaaI ACNGT 7 cut(s) 56, 161, 313, 616, 627, 913, 964
TaiI ACGT 1 cut(s) 1106
TaqI TCGA 5 cut(s) 20, 201, 243, 1112, 1139
TasI AATT 7 cut(s) 97, 324, 565, 808, 968, 1095, 1114
TatI WGTACW 1 cut(s) 1132
TauI GCSGC 3 cut(s) 861, 891, 1000
TfiI GAWTC 6 cut(s) 22, 198, 245, 483, 697, 923
TscAI CASTG 8 cut(s) 164, 177, 297, 336, 460, 619, 755, 1113
TseFI GTSAC 2 cut(s) 181, 733
TseI GCWGC 3 cut(s) 608, 638, 881
Tsp45I GTSAC 2 cut(s) 181, 733
TspDTI ATGAA 5 cut(s) 105, 578, 614, 802, 1029
TspGWI ACGGA 1 cut(s) 965
TspRI CASTG 8 cut(s) 164, 177, 297, 336, 460, 619, 755, 1113
VpaK11BI GGWCC 1 cut(s) 756
XapI RAATTY 3 cut(s) 808, 968, 1095
XbaI TCTAGA 1 cut(s) 1021
XceI RCATGY 2 cut(s) 71, 493
XspI CTAG 4 cut(s) 519, 702, 845, 1022
ZrmI AGTACT 1 cut(s) 1134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.