Rw2G035560

Survival protein SurE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0002356
Physical Location & Seq
Forward (+)
58605042 .. 58608596
3555 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G035560.1

Sequence Viewer

Length: 1089 bp
ATGAGTTCAACATCTGTGAAACCCAACATGCTGCCTGCGGGCCTGGTCTCCAATCTCCAAGACGTGTTGAGCAAAAGAGGTGGAGGTGACCAACCCACTGAGCCTTCAACTTCTGAACCCATCGTTTTGGTCACCAATGGTGATGGGATTGACTCCCCTGGTCTTACTTACCTTGTTGAAGCTCTCGTCCGCCAAGGCCTTTACAATGTCCATGTCTGCGCTCCTCAATCGGACAAATCAGTATCAGGTCATTCCGTGACTCTCCGAGAAACGGTTTCTGTTAATTCTGCTGAGATAAATGGTGCCACAGCTTATGAAGTTGCAGGTACTCCCGTAGATTGTGTCTCATTAGCGTTATCTGGCGCACTGTTTTCTTGGTCAAAACCTCTGCTGGTAATCAGTGGAATCAACCGGGGATCAAACTGTGGCCATCACATGTTGTACTCGGGTGTTGTTGCTGGAGCTAGGGAGGCACTAATAAGTGGAGTGCCCTCTTTATCAATATCACTAAATTGGAGGAAGGATGAAAGTCAAGAAAATGATTTCAAAGATGCAGTTGCTGTTTGTTTACCTCTAATAAATGCAGCAATCAGGGATCTTGAGAAGGGGGAATTCCCCAAGAGTTGCTTTCTGAATATAGAGATTCCTTCATCTCCTTTATCAAACAAGGGTTTTAAAATAACCAAGCAAAGTACATGGAGATCTACTCCCAGCTGGCAAGCTGTTTCAGCTAATCGTTATCCTCCTGGACATTTCATGAACAGTCAACAAAGCCTTGGGATTCAGCTTGCACAACTTGGCCGAGATGCATCTGCTGCCGGTGCAGCTCGTCGTGTGACAACACAGAAGAAGAATGTGGAGATTGAATCAATTGGAGCTGCAGGAAAATCTGATTTTGAACGGGTGAAAAAGTACTTCCGACTAGAGTTTGTGGATAAAGAGCAGGAAAATACGGATGAGGATCTGGATTTCAGAGCACTCGAAAGTGGATTTGTATCGGTAACTCCTCTTTCCCTTTCACCACATCTCGAGTCCGATACTCAAACAGCTGCCTCCAATTGGATCTCGTCTGCACTTCAAGAGCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 ko00760 ko01100 ko01110 map00230 map00240 map00760 map01100 map01110
Pfam Domains
Protein Families
SurE

Protein Analysis

362

Amino Acids

38.8

Weight (kDa)

5.48

Isoelectric Point (pI)

40.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SurE PF01975 42 - 234 1.5e-52 Survival protein SurE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 314
AccB1I GGYRCC 1 cut(s) 302
AciI CCGC 2 cut(s) 38, 190
AclWI GGATC 4 cut(s) 424, 603, 969, 1070
AcoI YGGCCR 2 cut(s) 427, 799
AcsI RAATTY 1 cut(s) 611
AfaI GTAC 4 cut(s) 328, 443, 694, 914
AfiI CCNNNNNNNGG 2 cut(s) 271, 1059
AflIII ACRYGT 2 cut(s) 63, 435
AgsI TTSAA 7 cut(s) 9, 108, 179, 547, 866, 899, 1079
AjiI CACGTC 1 cut(s) 64
AjnI CCWGG 3 cut(s) 42, 157, 745
Alw21I GWGCWC 1 cut(s) 979
Alw26I GTCTC 2 cut(s) 52, 349
AlwI GGATC 4 cut(s) 424, 603, 969, 1070
AlwNI CAGNNNCTG 1 cut(s) 560
Ama87I CYCGRG 2 cut(s) 445, 1028
AoxI GGCC 4 cut(s) 40, 196, 427, 799
ApeKI GCWGC 6 cut(s) 31, 584, 815, 824, 878, 1049
ApoI RAATTY 1 cut(s) 611
AspLEI GCGC 2 cut(s) 221, 365
AspS9I GGNCC 1 cut(s) 40
AsuC2I CCSGG 1 cut(s) 413
AsuHPI GGTGA 5 cut(s) 98, 124, 152, 916, 1011
AvaI CYCGRG 2 cut(s) 445, 1028
BaeGI GKGCMC 1 cut(s) 492
BaeI ACNNNNGTAYC 2 cut(s) 318, 351
BalI TGGCCA 1 cut(s) 429
BanI GGYRCC 1 cut(s) 302
Bbv12I GWGCWC 1 cut(s) 979
BbvI GCAGC 6 cut(s) 18, 596, 802, 836, 865, 1036
BccI CCATC 3 cut(s) 128, 137, 438
BciT130I CCWGG 3 cut(s) 44, 159, 747
BcnI CCSGG 1 cut(s) 413
BcoDI GTCTC 2 cut(s) 52, 349
BfaI CTAG 2 cut(s) 465, 923
BfmI CTRYAG 1 cut(s) 879
BfuAI ACCTGC 1 cut(s) 314
BglII AGATCT 1 cut(s) 701
BisI GCNGC 6 cut(s) 32, 585, 816, 825, 879, 1050
BlsI GCNGC 6 cut(s) 33, 586, 817, 826, 880, 1051
BmcAI AGTACT 1 cut(s) 914
Bme1390I CCNGG 4 cut(s) 44, 159, 413, 747
BmeT110I CYCGRG 2 cut(s) 445, 1028
BmgBI CACGTC 1 cut(s) 64
BmgT120I GGNCC 1 cut(s) 40
BmiI GGNNCC 1 cut(s) 304
BmrFI CCNGG 4 cut(s) 44, 159, 413, 747
BmsI GCATC 3 cut(s) 541, 796, 818
BplI GAGNNNNNCTC 2 cut(s) 691, 723
BpmI CTGGAG 1 cut(s) 480
BpuEI CTTGAG 1 cut(s) 620
BpuMI CCSGG 1 cut(s) 413
BsaBI GATNNNNATC 2 cut(s) 960, 994
BsaI GGTCTC 1 cut(s) 52
BsaJI CCNNGG 4 cut(s) 157, 193, 412, 775
Bsc4I CCNNNNNNNGG 2 cut(s) 271, 1059
Bse118I RCCGGY 1 cut(s) 818
Bse8I GATNNNNATC 2 cut(s) 960, 994
BseBI CCWGG 3 cut(s) 44, 159, 747
BseDI CCNNGG 4 cut(s) 157, 193, 412, 775
BseGI GGATG 2 cut(s) 529, 961
BseJI GATNNNNATC 2 cut(s) 960, 994
BseLI CCNNNNNNNGG 2 cut(s) 271, 1059
BseMII CTCAG 2 cut(s) 90, 282
BseRI GAGGAG 2 cut(s) 213, 996
BseSI GKGCMC 1 cut(s) 492
BseXI GCAGC 6 cut(s) 18, 596, 802, 836, 865, 1036
BseYI CCCAGC 1 cut(s) 710
BsgI GTGCAG 2 cut(s) 843, 1056
BshFI GGCC 4 cut(s) 42, 198, 429, 801
BshNI GGYRCC 1 cut(s) 302
BsiHKAI GWGCWC 1 cut(s) 979
BsiHKCI CYCGRG 2 cut(s) 445, 1028
BsiSI CCGG 2 cut(s) 412, 819
BslI CCNNNNNNNGG 2 cut(s) 271, 1059
BsmAI GTCTC 2 cut(s) 52, 349
BsnI GGCC 4 cut(s) 42, 198, 429, 801
Bso31I GGTCTC 1 cut(s) 52
BsoBI CYCGRG 2 cut(s) 445, 1028
Bsp1286I GDGCHC 2 cut(s) 492, 979
Bsp143I GATC 5 cut(s) 416, 595, 701, 961, 1062
BspACI CCGC 2 cut(s) 38, 190
BspANI GGCC 4 cut(s) 42, 198, 429, 801
BspCNI CTCAG 2 cut(s) 91, 283
BspHI TCATGA 1 cut(s) 756
BspLI GGNNCC 1 cut(s) 304
BspMAI CTGCAG 1 cut(s) 883
BspMI ACCTGC 1 cut(s) 314
BspPI GGATC 4 cut(s) 424, 603, 969, 1070
BspT107I GGYRCC 1 cut(s) 302
BspTNI GGTCTC 1 cut(s) 52
BsrFI RCCGGY 1 cut(s) 818
BssAI RCCGGY 1 cut(s) 818
BssECI CCNNGG 4 cut(s) 157, 193, 412, 775
BssMI GATC 5 cut(s) 416, 595, 701, 961, 1062
BssT1I CCWWGG 2 cut(s) 193, 775
Bst2UI CCWGG 3 cut(s) 44, 159, 747
Bst4CI ACNGT 4 cut(s) 274, 369, 425, 764
BstAPI GCANNNNNTGC 1 cut(s) 815
BstC8I GCNNGC 5 cut(s) 36, 40, 716, 720, 789
BstDEI CTNAG 2 cut(s) 99, 291
BstEII GGTNACC 2 cut(s) 86, 130
BstF5I GGATG 2 cut(s) 529, 961
BstHHI GCGC 2 cut(s) 221, 365
BstKTI GATC 5 cut(s) 419, 598, 704, 964, 1065
BstMAI GTCTC 2 cut(s) 52, 349
BstMBI GATC 5 cut(s) 416, 595, 701, 961, 1062
BstMWI GCNNNNNNNGC 5 cut(s) 470, 728, 815, 821, 824
BstNI CCWGG 3 cut(s) 44, 159, 747
BstNSI RCATGY 2 cut(s) 31, 439
BstPI GGTNACC 2 cut(s) 86, 130
BstSCI CCNGG 4 cut(s) 42, 157, 411, 745
BstSFI CTRYAG 1 cut(s) 879
BstSLI GKGCMC 1 cut(s) 492
BstV1I GCAGC 6 cut(s) 18, 596, 802, 836, 865, 1036
BstX2I RGATCY 4 cut(s) 595, 701, 961, 1062
BstXI CCANNNNNNTGG 1 cut(s) 127
BstYI RGATCY 4 cut(s) 595, 701, 961, 1062
BsuRI GGCC 4 cut(s) 42, 198, 429, 801
BtrI CACGTC 1 cut(s) 64
BtsCI GGATG 2 cut(s) 529, 961
BtsIMutI CAGTG 3 cut(s) 96, 365, 406
BveI ACCTGC 1 cut(s) 314
Cac8I GCNNGC 5 cut(s) 36, 40, 716, 720, 789
CaiI CAGNNNCTG 1 cut(s) 560
CciI TCATGA 1 cut(s) 756
CfoI GCGC 2 cut(s) 221, 365
Cfr10I RCCGGY 1 cut(s) 818
Cfr13I GGNCC 1 cut(s) 40
Csp6I GTAC 4 cut(s) 327, 442, 693, 913
CspCI CAANNNNNGTGG 2 cut(s) 61, 96
CviAII CATG 5 cut(s) 28, 212, 436, 696, 757
CviQI GTAC 4 cut(s) 327, 442, 693, 913
DdeI CTNAG 2 cut(s) 99, 291
DpnI GATC 5 cut(s) 418, 597, 703, 963, 1064
DpnII GATC 5 cut(s) 416, 595, 701, 961, 1062
DraI TTTAAA 1 cut(s) 676
EaeI YGGCCR 2 cut(s) 427, 799
EciI GGCGGA 1 cut(s) 179
Eco130I CCWWGG 2 cut(s) 193, 775
Eco147I AGGCCT 1 cut(s) 198
Eco31I GGTCTC 1 cut(s) 52
Eco88I CYCGRG 2 cut(s) 445, 1028
Eco91I GGTNACC 2 cut(s) 86, 130
EcoO65I GGTNACC 2 cut(s) 86, 130
EcoRI GAATTC 1 cut(s) 611
EcoRII CCWGG 3 cut(s) 42, 157, 745
EcoT14I CCWWGG 2 cut(s) 193, 775
EcoT22I ATGCAT 1 cut(s) 811
ErhI CCWWGG 2 cut(s) 193, 775
FaeI CATG 5 cut(s) 31, 215, 439, 699, 760
FaiI YATR 7 cut(s) 29, 213, 315, 437, 638, 697, 758
FalI AAGNNNNNCTT 2 cut(s) 611, 643
FatI CATG 5 cut(s) 27, 211, 435, 695, 756
FauI CCCGC 1 cut(s) 31
Fnu4HI GCNGC 6 cut(s) 32, 585, 816, 825, 879, 1050
FokI GGATG 2 cut(s) 536, 968
Fsp4HI GCNGC 6 cut(s) 32, 585, 816, 825, 879, 1050
FspBI CTAG 2 cut(s) 465, 923
GlaI GCGC 2 cut(s) 220, 364
GluI GCNGC 6 cut(s) 32, 585, 816, 825, 879, 1050
GsaI CCCAGC 1 cut(s) 714
GsuI CTGGAG 1 cut(s) 480
HaeIII GGCC 4 cut(s) 42, 198, 429, 801
HapII CCGG 2 cut(s) 412, 819
HhaI GCGC 2 cut(s) 221, 365
Hin1II CATG 5 cut(s) 31, 215, 439, 699, 760
Hin6I GCGC 2 cut(s) 219, 363
HinP1I GCGC 2 cut(s) 219, 363
HincII GTYRAC 1 cut(s) 767
HindII GTYRAC 1 cut(s) 767
HinfI GANTC 7 cut(s) 152, 259, 405, 643, 781, 866, 1031
HpaII CCGG 2 cut(s) 412, 819
HphI GGTGA 5 cut(s) 98, 124, 152, 916, 1011
Hpy166II GTNNAC 2 cut(s) 569, 767
Hpy188I TCNGA 8 cut(s) 115, 232, 266, 633, 892, 920, 974, 1036
Hpy188III TCNNGA 6 cut(s) 533, 599, 757, 965, 1028, 1079
Hpy8I GTNNAC 2 cut(s) 569, 767
Hpy99I CGWCG 1 cut(s) 834
HpyAV CCTTC 4 cut(s) 114, 514, 598, 657
HpyCH4III ACNGT 4 cut(s) 274, 369, 425, 764
HpyCH4IV ACGT 1 cut(s) 63
HpyCH4V TGCA 8 cut(s) 323, 554, 584, 791, 809, 824, 881, 1073
HpyF10VI GCNNNNNNNGC 5 cut(s) 470, 728, 815, 821, 824
HpyF3I CTNAG 2 cut(s) 99, 291
HpySE526I ACGT 1 cut(s) 63
Hsp92II CATG 5 cut(s) 31, 215, 439, 699, 760
HspAI GCGC 2 cut(s) 219, 363
Kzo9I GATC 5 cut(s) 416, 595, 701, 961, 1062
LmnI GCTCC 3 cut(s) 226, 461, 875
Lsp1109I GCAGC 6 cut(s) 18, 596, 802, 836, 865, 1036
LweI GCATC 3 cut(s) 541, 796, 818
MaeI CTAG 2 cut(s) 465, 923
MaeII ACGT 1 cut(s) 63
MaeIII GTNAC 5 cut(s) 86, 130, 256, 835, 1000
MalI GATC 5 cut(s) 418, 597, 703, 963, 1064
MboI GATC 5 cut(s) 416, 595, 701, 961, 1062
MboII GAAGA 2 cut(s) 859, 862
MfeI CAATTG 2 cut(s) 870, 1057
MflI RGATCY 4 cut(s) 595, 701, 961, 1062
MhlI GDGCHC 2 cut(s) 492, 979
MlsI TGGCCA 1 cut(s) 429
MluCI AATT 5 cut(s) 283, 511, 611, 870, 1057
MluNI TGGCCA 1 cut(s) 429
MlyI GAGTC 3 cut(s) 146, 253, 1040
MmeI TCCRAC 1 cut(s) 943
Mox20I TGGCCA 1 cut(s) 429
Mph1103I ATGCAT 1 cut(s) 811
MscI TGGCCA 1 cut(s) 429
MseI TTAA 2 cut(s) 282, 675
Msp20I TGGCCA 1 cut(s) 429
MspA1I CMGCKG 2 cut(s) 714, 1049
MspI CCGG 2 cut(s) 412, 819
MspR9I CCNGG 4 cut(s) 44, 159, 413, 747
MunI CAATTG 2 cut(s) 870, 1057
MvaI CCWGG 3 cut(s) 44, 159, 747
MwoI GCNNNNNNNGC 5 cut(s) 470, 728, 815, 821, 824
NciI CCSGG 1 cut(s) 413
NdeII GATC 5 cut(s) 416, 595, 701, 961, 1062
NlaIII CATG 5 cut(s) 31, 215, 439, 699, 760
NlaIV GGNNCC 1 cut(s) 304
NmeAIII GCCGAG 1 cut(s) 827
NmuCI GTSAC 4 cut(s) 86, 130, 256, 835
NsiI ATGCAT 1 cut(s) 811
NspI RCATGY 2 cut(s) 31, 439
PaeR7I CTCGAG 1 cut(s) 1028
PagI TCATGA 1 cut(s) 756
PceI AGGCCT 1 cut(s) 198
PciI ACATGT 1 cut(s) 435
PfeI GAWTC 4 cut(s) 405, 643, 781, 866
PfoI TCCNGGA 1 cut(s) 745
PkrI GCNGC 6 cut(s) 33, 586, 817, 826, 880, 1051
PleI GAGTC 3 cut(s) 146, 253, 1039
PpsI GAGTC 3 cut(s) 146, 253, 1039
PscI ACATGT 1 cut(s) 435
Psp6I CCWGG 3 cut(s) 42, 157, 745
PspEI GGTNACC 2 cut(s) 86, 130
PspFI CCCAGC 1 cut(s) 710
PspGI CCWGG 3 cut(s) 42, 157, 745
PspN4I GGNNCC 1 cut(s) 304
PspPI GGNCC 1 cut(s) 40
PstI CTGCAG 1 cut(s) 883
PstNI CAGNNNCTG 1 cut(s) 560
PsuI RGATCY 4 cut(s) 595, 701, 961, 1062
PvuII CAGCTG 2 cut(s) 714, 1049
RsaI GTAC 4 cut(s) 328, 443, 694, 914
RsaNI GTAC 4 cut(s) 327, 442, 693, 913
SaqAI TTAA 2 cut(s) 282, 675
SatI GCNGC 6 cut(s) 32, 585, 816, 825, 879, 1050
Sau3AI GATC 5 cut(s) 416, 595, 701, 961, 1062
Sau96I GGNCC 1 cut(s) 40
ScaI AGTACT 1 cut(s) 914
SchI GAGTC 3 cut(s) 146, 253, 1040
ScrFI CCNGG 4 cut(s) 44, 159, 413, 747
SduI GDGCHC 2 cut(s) 492, 979
SfaNI GCATC 3 cut(s) 541, 796, 818
SfcI CTRYAG 1 cut(s) 879
Sfr274I CTCGAG 1 cut(s) 1028
SlaI CTCGAG 1 cut(s) 1028
SmlI CTYRAG 2 cut(s) 599, 1028
SmoI CTYRAG 2 cut(s) 599, 1028
Sse9I AATT 5 cut(s) 283, 511, 611, 870, 1057
SseBI AGGCCT 1 cut(s) 198
SsiI CCGC 2 cut(s) 38, 190
SspMI CTAG 2 cut(s) 465, 923
StuI AGGCCT 1 cut(s) 198
StyD4I CCNGG 4 cut(s) 42, 157, 411, 745
StyI CCWWGG 2 cut(s) 193, 775
TaaI ACNGT 4 cut(s) 274, 369, 425, 764
TaiI ACGT 1 cut(s) 66
TaqI TCGA 2 cut(s) 981, 1029
TasI AATT 5 cut(s) 283, 511, 611, 870, 1057
TatI WGTACW 3 cut(s) 441, 692, 912
TfiI GAWTC 4 cut(s) 405, 643, 781, 866
Tru1I TTAA 2 cut(s) 282, 675
Tru9I TTAA 2 cut(s) 282, 675
TscAI CASTG 3 cut(s) 103, 372, 406
TseFI GTSAC 4 cut(s) 86, 130, 256, 835
TseI GCWGC 6 cut(s) 31, 584, 815, 824, 878, 1049
Tsp45I GTSAC 4 cut(s) 86, 130, 256, 835
TspDTI ATGAA 5 cut(s) 330, 540, 639, 745, 773
TspGWI ACGGA 2 cut(s) 244, 968
TspRI CASTG 3 cut(s) 103, 372, 406
XapI RAATTY 1 cut(s) 611
XceI RCATGY 2 cut(s) 31, 439
XhoI CTCGAG 1 cut(s) 1028
XspI CTAG 2 cut(s) 465, 923
ZrmI AGTACT 1 cut(s) 914
Zsp2I ATGCAT 1 cut(s) 811
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.