RchiOBHm_Chr3g0459491

Survival protein SurE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0002356
Physical Location & Seq
Forward (+)
7891284 .. 7892581
1298 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ42608

Sequence Viewer

Length: 546 bp
ATGCAGCCACTGTTGATATGTGCAGCTGCAAAAAGCATCCAGGAGGGAGTTTTCCCCAAAAGTTGTTTACTCAATATTGAGATTCCTAGTTGTCCTTTGACAAATAAGGGCTTCAAAGTGACCAAGCAGAGTCAGTGGAGGTCCTCTTTGAGCTGGAAAGCTGTGTCAACAAACAAACATCCTCCCCCTGCAAATTTCATGTCCAATCAGCAAAGCCTTGGTATTCAACTAGCACAGCTCAGCCGCGAAGCTTCAATAGCTGGTGCAGCTCGCCGCTTGAACTCTCAGCGCAAGACTGTAGAGGTTGAATCGGTTGGTGTAGCCAGAAAAATGAGCTCCCAAAAAACAGTAAAATTCTTCCGTTTAGAGTTCTTAGAGGAGCAGCAGGAATATGTAGATGAAGATCTAGATATCAGAGCACTAGAAGATGGATTTGTTGCGATTACTCCGATTTGCTTATCTCCATCTGTTCAATCGGAAATTCAAACGTCAGTGTCGAATTGGATTGCTGGAGCAGTACTTTCGAACAACCGGTTGGCATTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 ko00760 ko01100 ko01110 map00230 map00240 map00760 map01100 map01110
Pfam Domains
Protein Families
SurE

Protein Analysis

181

Amino Acids

19.96

Weight (kDa)

8.98

Isoelectric Point (pI)

65.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 246
AciI CCGC 2 cut(s) 244, 274
AcsI RAATTY 3 cut(s) 193, 353, 480
AfaI GTAC 1 cut(s) 519
AgeI ACCGGT 1 cut(s) 531
AgsI TTSAA 7 cut(s) 115, 227, 255, 280, 308, 473, 485
AjnI CCWGG 1 cut(s) 39
AjuI GAANNNNNNNTTGG 1 cut(s) 518
AluBI AGCT 8 cut(s) 26, 153, 161, 238, 251, 260, 269, 336
AluI AGCT 8 cut(s) 26, 153, 161, 238, 251, 260, 269, 336
Alw21I GWGCWC 2 cut(s) 338, 421
AlwNI CAGNNNCTG 1 cut(s) 10
ApeKI GCWGC 5 cut(s) 4, 23, 26, 266, 382
ApoI RAATTY 3 cut(s) 193, 353, 480
ArsI GACNNNNNNTTYG 2 cut(s) 185, 217
AsiGI ACCGGT 1 cut(s) 531
AspLEI GCGC 1 cut(s) 291
AspS9I GGNCC 1 cut(s) 141
AsuII TTCGAA 1 cut(s) 524
AvaII GGWCC 1 cut(s) 141
BanII GRGCYC 1 cut(s) 338
Bbv12I GWGCWC 2 cut(s) 338, 421
BbvI GCAGC 5 cut(s) 13, 16, 35, 278, 394
BccI CCATC 2 cut(s) 422, 472
BcgI CGANNNNNNTGC 2 cut(s) 504, 538
BciT130I CCWGG 1 cut(s) 41
BfaI CTAG 4 cut(s) 87, 230, 407, 422
BfmI CTRYAG 1 cut(s) 297
BglII AGATCT 1 cut(s) 403
BisI GCNGC 7 cut(s) 5, 24, 27, 244, 267, 274, 383
BlpI GCTNAGC 1 cut(s) 239
BlsI GCNGC 7 cut(s) 6, 25, 28, 245, 268, 275, 384
BmcAI AGTACT 1 cut(s) 519
Bme1390I CCNGG 1 cut(s) 41
Bme18I GGWCC 1 cut(s) 141
BmgT120I GGNCC 1 cut(s) 141
BmrFI CCNGG 1 cut(s) 41
BmsI GCATC 1 cut(s) 45
BpmI CTGGAG 1 cut(s) 531
Bpu1102I GCTNAGC 1 cut(s) 239
Bpu14I TTCGAA 1 cut(s) 524
BsaBI GATNNNNATC 1 cut(s) 402
BsaJI CCNNGG 1 cut(s) 217
BsaWI WCCGGW 1 cut(s) 531
Bse118I RCCGGY 1 cut(s) 531
Bse8I GATNNNNATC 1 cut(s) 402
BseBI CCWGG 1 cut(s) 41
BseDI CCNNGG 1 cut(s) 217
BseGI GGATG 2 cut(s) 36, 178
BseJI GATNNNNATC 1 cut(s) 402
BseMII CTCAG 2 cut(s) 253, 299
BseRI GAGGAG 1 cut(s) 392
BseXI GCAGC 5 cut(s) 13, 16, 35, 278, 394
BsgI GTGCAG 2 cut(s) 42, 285
Bsh1236I CGCG 1 cut(s) 246
BshTI ACCGGT 1 cut(s) 531
BsiHKAI GWGCWC 2 cut(s) 338, 421
BsiSI CCGG 1 cut(s) 532
Bsp119I TTCGAA 1 cut(s) 524
Bsp1286I GDGCHC 2 cut(s) 338, 421
Bsp143I GATC 1 cut(s) 403
Bsp1720I GCTNAGC 1 cut(s) 239
BspACI CCGC 2 cut(s) 244, 274
BspCNI CTCAG 2 cut(s) 252, 298
BspFNI CGCG 1 cut(s) 246
BspT104I TTCGAA 1 cut(s) 524
BsrFI RCCGGY 1 cut(s) 531
BssAI RCCGGY 1 cut(s) 531
BssECI CCNNGG 1 cut(s) 217
BssMI GATC 1 cut(s) 403
BssT1I CCWWGG 1 cut(s) 217
Bst2UI CCWGG 1 cut(s) 41
Bst4CI ACNGT 3 cut(s) 12, 298, 349
BstBI TTCGAA 1 cut(s) 524
BstC8I GCNNGC 1 cut(s) 271
BstDEI CTNAG 3 cut(s) 239, 285, 373
BstF5I GGATG 2 cut(s) 36, 178
BstFNI CGCG 1 cut(s) 246
BstHHI GCGC 1 cut(s) 291
BstKTI GATC 1 cut(s) 406
BstMBI GATC 1 cut(s) 403
BstMWI GCNNNNNNNGC 2 cut(s) 257, 266
BstNI CCWGG 1 cut(s) 41
BstSCI CCNGG 1 cut(s) 39
BstSFI CTRYAG 1 cut(s) 297
BstUI CGCG 1 cut(s) 246
BstV1I GCAGC 5 cut(s) 13, 16, 35, 278, 394
BstX2I RGATCY 1 cut(s) 403
BstYI RGATCY 1 cut(s) 403
BtsCI GGATG 2 cut(s) 36, 178
BtsIMutI CAGTG 3 cut(s) 8, 140, 498
Cac8I GCNNGC 1 cut(s) 271
CaiI CAGNNNCTG 1 cut(s) 10
CfoI GCGC 1 cut(s) 291
Cfr10I RCCGGY 1 cut(s) 531
Cfr13I GGNCC 1 cut(s) 141
Csp6I GTAC 1 cut(s) 518
CspAI ACCGGT 1 cut(s) 531
CviAII CATG 1 cut(s) 199
CviQI GTAC 1 cut(s) 518
DdeI CTNAG 3 cut(s) 239, 285, 373
DpnI GATC 1 cut(s) 405
DpnII GATC 1 cut(s) 403
Ecl136II GAGCTC 1 cut(s) 336
Eco130I CCWWGG 1 cut(s) 217
Eco24I GRGCYC 1 cut(s) 338
Eco32I GATATC 1 cut(s) 412
Eco47I GGWCC 1 cut(s) 141
Eco53kI GAGCTC 1 cut(s) 336
EcoICRI GAGCTC 1 cut(s) 336
EcoO109I RGGNCCY 1 cut(s) 141
EcoRII CCWGG 1 cut(s) 39
EcoRV GATATC 1 cut(s) 412
EcoT14I CCWWGG 1 cut(s) 217
EcoT38I GRGCYC 1 cut(s) 338
ErhI CCWWGG 1 cut(s) 217
FaeI CATG 1 cut(s) 202
FaiI YATR 4 cut(s) 19, 200, 393, 544
FatI CATG 1 cut(s) 198
Fnu4HI GCNGC 7 cut(s) 5, 24, 27, 244, 267, 274, 383
FokI GGATG 2 cut(s) 23, 165
FriOI GRGCYC 1 cut(s) 338
Fsp4HI GCNGC 7 cut(s) 5, 24, 27, 244, 267, 274, 383
FspBI CTAG 4 cut(s) 87, 230, 407, 422
GlaI GCGC 1 cut(s) 290
GluI GCNGC 7 cut(s) 5, 24, 27, 244, 267, 274, 383
GsuI CTGGAG 1 cut(s) 531
HapII CCGG 1 cut(s) 532
HhaI GCGC 1 cut(s) 291
Hin1II CATG 1 cut(s) 202
Hin6I GCGC 1 cut(s) 289
HinP1I GCGC 1 cut(s) 289
HincII GTYRAC 1 cut(s) 168
HindII GTYRAC 1 cut(s) 168
HindIII AAGCTT 1 cut(s) 249
HinfI GANTC 3 cut(s) 82, 130, 308
HpaII CCGG 1 cut(s) 532
Hpy166II GTNNAC 2 cut(s) 68, 168
Hpy188I TCNGA 3 cut(s) 416, 450, 478
Hpy188III TCNNGA 1 cut(s) 407
Hpy8I GTNNAC 2 cut(s) 68, 168
HpyCH4III ACNGT 3 cut(s) 12, 298, 349
HpyCH4IV ACGT 1 cut(s) 488
HpyCH4V TGCA 5 cut(s) 4, 23, 29, 191, 266
HpyF10VI GCNNNNNNNGC 2 cut(s) 257, 266
HpyF3I CTNAG 3 cut(s) 239, 285, 373
HpySE526I ACGT 1 cut(s) 488
Hsp92II CATG 1 cut(s) 202
HspAI GCGC 1 cut(s) 289
Kzo9I GATC 1 cut(s) 403
LmnI GCTCC 3 cut(s) 341, 379, 512
LpnPI CCDG 8 cut(s) 26, 53, 139, 201, 246, 337, 371, 495
Lsp1109I GCAGC 5 cut(s) 13, 16, 35, 278, 394
LweI GCATC 1 cut(s) 45
MaeI CTAG 4 cut(s) 87, 230, 407, 422
MaeII ACGT 1 cut(s) 488
MaeIII GTNAC 1 cut(s) 118
MalI GATC 1 cut(s) 405
MboI GATC 1 cut(s) 403
MboII GAAGA 3 cut(s) 349, 413, 437
MflI RGATCY 1 cut(s) 403
MhlI GDGCHC 2 cut(s) 338, 421
MluCI AATT 4 cut(s) 193, 353, 480, 499
MlyI GAGTC 1 cut(s) 139
MnlI CCTC 6 cut(s) 37, 132, 154, 192, 295, 370
MspA1I CMGCKG 1 cut(s) 26
MspI CCGG 1 cut(s) 532
MspR9I CCNGG 1 cut(s) 41
MvaI CCWGG 1 cut(s) 41
MvnI CGCG 1 cut(s) 246
MwoI GCNNNNNNNGC 2 cut(s) 257, 266
NdeII GATC 1 cut(s) 403
NlaIII CATG 1 cut(s) 202
NmuCI GTSAC 1 cut(s) 118
NspV TTCGAA 1 cut(s) 524
PcsI WCGNNNNNNNCGW 1 cut(s) 494
PfeI GAWTC 2 cut(s) 82, 308
PfoI TCCNGGA 1 cut(s) 39
PinAI ACCGGT 1 cut(s) 531
PkrI GCNGC 7 cut(s) 6, 25, 28, 245, 268, 275, 384
PleI GAGTC 1 cut(s) 138
PpsI GAGTC 1 cut(s) 138
PpuMI RGGWCCY 1 cut(s) 141
Psp124BI GAGCTC 1 cut(s) 338
Psp5II RGGWCCY 1 cut(s) 141
Psp6I CCWGG 1 cut(s) 39
PspGI CCWGG 1 cut(s) 39
PspPI GGNCC 1 cut(s) 141
PspPPI RGGWCCY 1 cut(s) 141
PstNI CAGNNNCTG 1 cut(s) 10
PsuI RGATCY 1 cut(s) 403
PvuII CAGCTG 1 cut(s) 26
RsaI GTAC 1 cut(s) 519
RsaNI GTAC 1 cut(s) 518
SacI GAGCTC 1 cut(s) 338
SatI GCNGC 7 cut(s) 5, 24, 27, 244, 267, 274, 383
Sau3AI GATC 1 cut(s) 403
Sau96I GGNCC 1 cut(s) 141
ScaI AGTACT 1 cut(s) 519
SchI GAGTC 1 cut(s) 139
ScrFI CCNGG 1 cut(s) 41
SduI GDGCHC 2 cut(s) 338, 421
SfaNI GCATC 1 cut(s) 45
SfcI CTRYAG 1 cut(s) 297
SfuI TTCGAA 1 cut(s) 524
SinI GGWCC 1 cut(s) 141
Sse9I AATT 4 cut(s) 193, 353, 480, 499
SsiI CCGC 2 cut(s) 244, 274
SspI AATATT 1 cut(s) 76
SspMI CTAG 4 cut(s) 87, 230, 407, 422
SstI GAGCTC 1 cut(s) 338
StyD4I CCNGG 1 cut(s) 39
StyI CCWWGG 1 cut(s) 217
TaaI ACNGT 3 cut(s) 12, 298, 349
TaiI ACGT 1 cut(s) 491
TaqI TCGA 2 cut(s) 497, 524
TasI AATT 4 cut(s) 193, 353, 480, 499
TatI WGTACW 1 cut(s) 517
TauI GCSGC 2 cut(s) 246, 276
TfiI GAWTC 2 cut(s) 82, 308
TscAI CASTG 3 cut(s) 15, 140, 498
TseFI GTSAC 1 cut(s) 118
TseI GCWGC 5 cut(s) 4, 23, 26, 266, 382
Tsp45I GTSAC 1 cut(s) 118
TspDTI ATGAA 2 cut(s) 187, 414
TspGWI ACGGA 1 cut(s) 350
TspRI CASTG 3 cut(s) 15, 140, 498
VpaK11BI GGWCC 1 cut(s) 141
XapI RAATTY 3 cut(s) 193, 353, 480
XbaI TCTAGA 1 cut(s) 406
XspI CTAG 4 cut(s) 87, 230, 407, 422
ZrmI AGTACT 1 cut(s) 519
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.