Rorug05G0356400

Survival protein SurE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0002356
Physical Location & Seq
Reverse (-)
44950995 .. 44953031
2037 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0356400.1

Sequence Viewer

Length: 1041 bp
ATGGAGTGCGAGGATCCTTCCCAACTCGTTCATGGCACTCCACTAGGGGATGGCAATGTGCGCGTTTCTATCTATGCCGCGCTTGAGGAGAATGCAAAAGTGCCATTTCCTGTGAAAGATGAAATTGAAACAGTGAAGCAGGCTATGGGGAGTTGGGTAGCATGGCCTAAACACCTAGTCATAAAATCACATCTCAAGAAACCTCCCAAGGATAGTGCTGAAAAGAAGAAGAAAAGGAAAGAGATAGGGGAAGAGGACTCGGAGATTGAATTTGGCTTGGCTAAATTGGCACCATCATTACCAGCTTCATTGAAGATGTTATGTTTGTGGGGTGAAGATGCATTGAAAGATGGGCATACAATCAACTTCTACATGGAGCCTGAAGTGTTTGGATTTTCTCGCAAGACTTATATATTGGGAAAAGATGTTCGGCGACTGGCAAGCATGAGGGAATTAACTGGAACTTGCATTGTACTGTACCAAAGGTACCTCTATGATCAGTTGAAGGCTTATAAAATGCTTGACATGGTTGCATTTGTTGACCCTTCACTTGTTGGTGCTGTGGGGTGTGGGAATGGAACTGTCAGGGCCCAACACATCAAAGATAGGCTTGCAACTGCTAAACCAGGACAGATGCTCATGTTGCCATTTAACTCGGGTGATCACTGGACTTTGACACTTGTTGATCCGGACAAACAAAGCGCCTATTTTATGGACCCGCTAAAAAGACGCTTACCCACAGGAGATTGGATGTCTATCGTGGAAACTGCTATGCGTATGTATAATGCTGAAAAGAAAAAGCAAGGCCGGAGTTCAGTCCAATGGAAAAATTTGGCTGGCATTCCTCCCCAACCTAGCAACAAGGAGTGTGGATACTTTATCATGCGATACATGAGAGATATCATTGAGGATAAAGACATGTCATTGTTTCCTACGAAGTGGGAGAGGAGAGGCAGCAGCCAATACACCCAAGCAGATATTGATCAAGTGCGAAATGAGTGGGGGAAGTTTGTTGTCAACACATATGTGCATGAGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 ko00760 ko01100 ko01110 map00230 map00240 map00760 map01100 map01110
Pfam Domains
Protein Families
SurE

Protein Analysis

346

Amino Acids

39.48

Weight (kDa)

8.73

Isoelectric Point (pI)

49.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF8039 PF26133 6 - 61 2.7e-10 Domain of unknown function (DUF8039)
Peptidase_C48 PF02902 192 - 333 8.2e-11 Ulp1 protease family, C-terminal catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 513
Acc65I GGTACC 1 cut(s) 486
AccB1I GGYRCC 2 cut(s) 289, 486
AccII CGCG 2 cut(s) 63, 80
AccIII TCCGGA 1 cut(s) 688
AciI CCGC 2 cut(s) 78, 719
AclWI GGATC 3 cut(s) 8, 21, 680
AcsI RAATTY 2 cut(s) 269, 829
AcuI CTGAAG 1 cut(s) 402
AfaI GTAC 3 cut(s) 474, 479, 488
AflIII ACRYGT 1 cut(s) 918
AgsI TTSAA 5 cut(s) 128, 269, 313, 346, 505
AjnI CCWGG 1 cut(s) 625
AleI CACNNNNGTG 1 cut(s) 1025
AloI GAACNNNNNNTCC 2 cut(s) 411, 443
AluBI AGCT 1 cut(s) 305
AluI AGCT 1 cut(s) 305
AlwI GGATC 3 cut(s) 8, 21, 680
Ama87I CYCGRG 1 cut(s) 655
Aor13HI TCCGGA 1 cut(s) 688
AoxI GGCC 3 cut(s) 164, 588, 805
ApaI GGGCCC 1 cut(s) 592
ApeKI GCWGC 2 cut(s) 954, 957
ApoI RAATTY 2 cut(s) 269, 829
Asp718I GGTACC 1 cut(s) 486
AspLEI GCGC 3 cut(s) 63, 82, 704
AspS9I GGNCC 3 cut(s) 588, 589, 715
AsuHPI GGTGA 2 cut(s) 344, 671
AvaI CYCGRG 1 cut(s) 655
AvaII GGWCC 1 cut(s) 715
BaeGI GKGCMC 1 cut(s) 592
BamHI GGATCC 1 cut(s) 13
BanI GGYRCC 2 cut(s) 289, 486
BanII GRGCYC 1 cut(s) 592
BbvI GCAGC 2 cut(s) 966, 969
BccI CCATC 3 cut(s) 44, 301, 344
BciT130I CCWGG 1 cut(s) 627
BciVI GTATCC 1 cut(s) 866
BclI TGATCA 3 cut(s) 496, 661, 982
BfaI CTAG 3 cut(s) 44, 176, 855
BfoI RGCGCY 1 cut(s) 705
BfuI GTATCC 1 cut(s) 866
BisI GCNGC 3 cut(s) 78, 955, 958
BlsI GCNGC 3 cut(s) 79, 956, 959
Bme1390I CCNGG 1 cut(s) 627
Bme18I GGWCC 1 cut(s) 715
BmeT110I CYCGRG 1 cut(s) 655
BmgT120I GGNCC 3 cut(s) 588, 589, 715
BmiI GGNNCC 6 cut(s) 15, 291, 378, 488, 590, 717
BmrFI CCNGG 1 cut(s) 627
BmsI GCATC 2 cut(s) 328, 624
BpuEI CTTGAG 2 cut(s) 104, 179
BsaBI GATNNNNATC 2 cut(s) 755, 981
BsaJI CCNNGG 1 cut(s) 207
BsaWI WCCGGW 1 cut(s) 688
Bse1I ACTGG 3 cut(s) 441, 463, 671
Bse3DI GCAATG 1 cut(s) 61
Bse8I GATNNNNATC 2 cut(s) 755, 981
BseAI TCCGGA 1 cut(s) 688
BseBI CCWGG 1 cut(s) 627
BseDI CCNNGG 1 cut(s) 207
BseGI GGATG 2 cut(s) 55, 756
BseJI GATNNNNATC 2 cut(s) 755, 981
BseMI GCAATG 1 cut(s) 61
BseNI ACTGG 3 cut(s) 441, 463, 671
BseRI GAGGAG 2 cut(s) 101, 961
BseSI GKGCMC 1 cut(s) 592
BseXI GCAGC 2 cut(s) 966, 969
Bsh1236I CGCG 2 cut(s) 63, 80
BshFI GGCC 3 cut(s) 166, 590, 807
BshNI GGYRCC 2 cut(s) 289, 486
BsiHKCI CYCGRG 1 cut(s) 655
BsiSI CCGG 2 cut(s) 689, 808
BsmI GAATGC 2 cut(s) 97, 840
BsnI GGCC 3 cut(s) 166, 590, 807
BsoBI CYCGRG 1 cut(s) 655
Bsp120I GGGCCC 1 cut(s) 588
Bsp1286I GDGCHC 1 cut(s) 592
Bsp13I TCCGGA 1 cut(s) 688
Bsp143I GATC 5 cut(s) 13, 496, 661, 685, 982
BspACI CCGC 2 cut(s) 78, 719
BspANI GGCC 3 cut(s) 166, 590, 807
BspEI TCCGGA 1 cut(s) 688
BspFNI CGCG 2 cut(s) 63, 80
BspLI GGNNCC 6 cut(s) 15, 291, 378, 488, 590, 717
BspPI GGATC 3 cut(s) 8, 21, 680
BspT107I GGYRCC 2 cut(s) 289, 486
BsrDI GCAATG 1 cut(s) 61
BsrI ACTGG 3 cut(s) 441, 463, 671
BssECI CCNNGG 1 cut(s) 207
BssMI GATC 5 cut(s) 13, 496, 661, 685, 982
BssT1I CCWWGG 1 cut(s) 207
Bst2UI CCWGG 1 cut(s) 627
Bst4CI ACNGT 3 cut(s) 133, 477, 583
Bst6I CTCTTC 1 cut(s) 246
BstC8I GCNNGC 4 cut(s) 141, 442, 612, 838
BstF5I GGATG 2 cut(s) 55, 756
BstFNI CGCG 2 cut(s) 63, 80
BstH2I RGCGCY 1 cut(s) 705
BstHHI GCGC 3 cut(s) 63, 82, 704
BstKTI GATC 5 cut(s) 16, 499, 664, 688, 985
BstMBI GATC 5 cut(s) 13, 496, 661, 685, 982
BstMWI GCNNNNNNNGC 3 cut(s) 60, 287, 643
BstNI CCWGG 1 cut(s) 627
BstNSI RCATGY 1 cut(s) 922
BstSCI CCNGG 1 cut(s) 625
BstSLI GKGCMC 1 cut(s) 592
BstUI CGCG 2 cut(s) 63, 80
BstV1I GCAGC 2 cut(s) 966, 969
BstX2I RGATCY 1 cut(s) 13
BstYI RGATCY 1 cut(s) 13
BsuI GTATCC 1 cut(s) 866
BsuRI GGCC 3 cut(s) 166, 590, 807
BtsCI GGATG 2 cut(s) 55, 756
BtsIMutI CAGTG 2 cut(s) 138, 664
Cac8I GCNNGC 4 cut(s) 141, 442, 612, 838
CfoI GCGC 3 cut(s) 63, 82, 704
Cfr13I GGNCC 3 cut(s) 588, 589, 715
CseI GACGC 1 cut(s) 738
Csp6I GTAC 3 cut(s) 473, 478, 487
CspCI CAANNNNNGTGG 2 cut(s) 850, 885
CviQI GTAC 3 cut(s) 473, 478, 487
DpnI GATC 5 cut(s) 15, 498, 663, 687, 984
DpnII GATC 5 cut(s) 13, 496, 661, 685, 982
Eam1104I CTCTTC 1 cut(s) 246
EarI CTCTTC 1 cut(s) 246
Eco130I CCWWGG 1 cut(s) 207
Eco24I GRGCYC 1 cut(s) 592
Eco32I GATATC 1 cut(s) 901
Eco47I GGWCC 1 cut(s) 715
Eco57I CTGAAG 1 cut(s) 402
Eco88I CYCGRG 1 cut(s) 655
EcoO109I RGGNCCY 1 cut(s) 588
EcoRII CCWGG 1 cut(s) 625
EcoRV GATATC 1 cut(s) 901
EcoT14I CCWWGG 1 cut(s) 207
EcoT22I ATGCAT 1 cut(s) 343
EcoT38I GRGCYC 1 cut(s) 592
ErhI CCWWGG 1 cut(s) 207
FalI AAGNNNNNCTT 2 cut(s) 594, 626
FauI CCCGC 1 cut(s) 726
FauNDI CATATG 1 cut(s) 1024
FbaI TGATCA 3 cut(s) 496, 661, 982
Fnu4HI GCNGC 3 cut(s) 78, 955, 958
FokI GGATG 2 cut(s) 62, 763
FriOI GRGCYC 1 cut(s) 592
Fsp4HI GCNGC 3 cut(s) 78, 955, 958
FspBI CTAG 3 cut(s) 44, 176, 855
GlaI GCGC 3 cut(s) 62, 81, 703
GluI GCNGC 3 cut(s) 78, 955, 958
HaeII RGCGCY 1 cut(s) 705
HaeIII GGCC 3 cut(s) 166, 590, 807
HapII CCGG 2 cut(s) 689, 808
HgaI GACGC 1 cut(s) 738
HhaI GCGC 3 cut(s) 63, 82, 704
Hin6I GCGC 3 cut(s) 61, 80, 702
HinP1I GCGC 3 cut(s) 61, 80, 702
HincII GTYRAC 2 cut(s) 541, 1018
HindII GTYRAC 2 cut(s) 541, 1018
HinfI GANTC 1 cut(s) 257
HpaII CCGG 2 cut(s) 689, 808
HphI GGTGA 2 cut(s) 344, 671
Hpy166II GTNNAC 2 cut(s) 541, 1018
Hpy188I TCNGA 1 cut(s) 262
Hpy188III TCNNGA 2 cut(s) 196, 689
Hpy8I GTNNAC 2 cut(s) 541, 1018
HpyAV CCTTC 3 cut(s) 27, 499, 555
HpyCH4III ACNGT 3 cut(s) 133, 477, 583
HpyCH4V TGCA 6 cut(s) 95, 341, 468, 533, 614, 1030
HpyF10VI GCNNNNNNNGC 3 cut(s) 60, 287, 643
HspAI GCGC 3 cut(s) 61, 80, 702
Kpn2I TCCGGA 1 cut(s) 688
KpnI GGTACC 1 cut(s) 490
Ksp22I TGATCA 3 cut(s) 496, 661, 982
Kzo9I GATC 5 cut(s) 13, 496, 661, 685, 982
LmnI GCTCC 1 cut(s) 376
Lsp1109I GCAGC 2 cut(s) 966, 969
LweI GCATC 2 cut(s) 328, 624
MaeI CTAG 3 cut(s) 44, 176, 855
MalI GATC 5 cut(s) 15, 498, 663, 687, 984
MboI GATC 5 cut(s) 13, 496, 661, 685, 982
MboII GAAGA 5 cut(s) 238, 241, 263, 325, 347
MflI RGATCY 1 cut(s) 13
MhlI GDGCHC 1 cut(s) 592
MluCI AATT 5 cut(s) 123, 269, 284, 452, 829
MlyI GAGTC 1 cut(s) 251
Mph1103I ATGCAT 1 cut(s) 343
MroI TCCGGA 1 cut(s) 688
MseI TTAA 2 cut(s) 455, 651
MslI CAYNNNNRTG 1 cut(s) 1025
MspI CCGG 2 cut(s) 689, 808
MspR9I CCNGG 1 cut(s) 627
Mva1269I GAATGC 2 cut(s) 97, 840
MvaI CCWGG 1 cut(s) 627
MvnI CGCG 2 cut(s) 63, 80
MwoI GCNNNNNNNGC 3 cut(s) 60, 287, 643
NdeI CATATG 1 cut(s) 1024
NdeII GATC 5 cut(s) 13, 496, 661, 685, 982
NlaIV GGNNCC 6 cut(s) 15, 291, 378, 488, 590, 717
NsiI ATGCAT 1 cut(s) 343
NspI RCATGY 1 cut(s) 922
OliI CACNNNNGTG 1 cut(s) 1025
PciI ACATGT 1 cut(s) 918
PctI GAATGC 2 cut(s) 97, 840
PkrI GCNGC 3 cut(s) 79, 956, 959
PleI GAGTC 1 cut(s) 251
PpsI GAGTC 1 cut(s) 251
PscI ACATGT 1 cut(s) 918
PsiI TTATAA 1 cut(s) 513
Psp6I CCWGG 1 cut(s) 625
PspGI CCWGG 1 cut(s) 625
PspN4I GGNNCC 6 cut(s) 15, 291, 378, 488, 590, 717
PspOMI GGGCCC 1 cut(s) 588
PspPI GGNCC 3 cut(s) 588, 589, 715
PsuI RGATCY 1 cut(s) 13
RsaI GTAC 3 cut(s) 474, 479, 488
RsaNI GTAC 3 cut(s) 473, 478, 487
RseI CAYNNNNRTG 1 cut(s) 1025
SaqAI TTAA 2 cut(s) 455, 651
SatI GCNGC 3 cut(s) 78, 955, 958
Sau3AI GATC 5 cut(s) 13, 496, 661, 685, 982
Sau96I GGNCC 3 cut(s) 588, 589, 715
SchI GAGTC 1 cut(s) 251
ScrFI CCNGG 1 cut(s) 627
SduI GDGCHC 1 cut(s) 592
SetI ASST 6 cut(s) 177, 205, 307, 488, 492, 856
SfaNI GCATC 2 cut(s) 328, 624
SinI GGWCC 1 cut(s) 715
SmiMI CAYNNNNRTG 1 cut(s) 1025
SmlI CTYRAG 2 cut(s) 83, 194
SmoI CTYRAG 2 cut(s) 83, 194
Sse9I AATT 5 cut(s) 123, 269, 284, 452, 829
SsiI CCGC 2 cut(s) 78, 719
SspMI CTAG 3 cut(s) 44, 176, 855
StyD4I CCNGG 1 cut(s) 625
StyI CCWWGG 1 cut(s) 207
TaaI ACNGT 3 cut(s) 133, 477, 583
TasI AATT 5 cut(s) 123, 269, 284, 452, 829
TatI WGTACW 1 cut(s) 472
TauI GCSGC 1 cut(s) 80
Tru1I TTAA 2 cut(s) 455, 651
Tru9I TTAA 2 cut(s) 455, 651
TscAI CASTG 2 cut(s) 138, 671
TseI GCWGC 2 cut(s) 954, 957
TspDTI ATGAA 3 cut(s) 20, 135, 297
TspRI CASTG 2 cut(s) 138, 671
VpaK11BI GGWCC 1 cut(s) 715
XapI RAATTY 2 cut(s) 269, 829
XceI RCATGY 1 cut(s) 922
XcmI CCANNNNNNNNNTGG 1 cut(s) 29
XspI CTAG 3 cut(s) 44, 176, 855
Zsp2I ATGCAT 1 cut(s) 343
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.