Rroxscaffold_2G00101590

Survival protein SurE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0002356
Physical Location & Seq
Reverse (-)
23500058 .. 23504202
4145 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00101590.1

Sequence Viewer

Length: 282 bp
ATGAACAGTCAACAAAGCCTTGGGATTCAGCTTGCACAACTTGGCCGAGATGCATCTGCTGCCGGTGCAGCTCGTCGTGTGACGACACAGAAGAAGAATGTGGAGATTGAATCAACTGGAGCTGCAGGAAAATCTGATTTTGAACGGGTGAAAAAGTACTTCCGACTAGAGTTTGTGGATAAAGAGCAGGAAAATATGGATGAGGATCTGGATTTCAGAGCACTCGAAAGCGGATTTGTATCAGTTACTCCTCTTTCCCCTTTCACCACATCTCGAGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 ko00760 ko01100 ko01110 map00230 map00240 map00760 map01100 map01110
Pfam Domains
Protein Families
SurE

Protein Analysis

93

Amino Acids

10.3

Weight (kDa)

5.42

Isoelectric Point (pI)

39.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 231
AclWI GGATC 1 cut(s) 213
AcoI YGGCCR 1 cut(s) 43
AfaI GTAC 1 cut(s) 158
AgsI TTSAA 2 cut(s) 110, 143
AluBI AGCT 3 cut(s) 31, 71, 122
AluI AGCT 3 cut(s) 31, 71, 122
Alw21I GWGCWC 1 cut(s) 223
AlwI GGATC 1 cut(s) 213
Ama87I CYCGRG 1 cut(s) 273
AoxI GGCC 1 cut(s) 43
ApeKI GCWGC 3 cut(s) 59, 68, 122
AsuHPI GGTGA 2 cut(s) 160, 256
AvaI CYCGRG 1 cut(s) 273
Bbv12I GWGCWC 1 cut(s) 223
BbvI GCAGC 3 cut(s) 46, 80, 109
BfaI CTAG 1 cut(s) 167
BfmI CTRYAG 1 cut(s) 123
BisI GCNGC 3 cut(s) 60, 69, 123
BlsI GCNGC 3 cut(s) 61, 70, 124
BmcAI AGTACT 1 cut(s) 158
BmeT110I CYCGRG 1 cut(s) 273
BmsI GCATC 2 cut(s) 40, 62
BpmI CTGGAG 1 cut(s) 138
BsaBI GATNNNNATC 2 cut(s) 204, 238
BsaJI CCNNGG 1 cut(s) 19
Bse118I RCCGGY 1 cut(s) 62
Bse1I ACTGG 1 cut(s) 121
Bse8I GATNNNNATC 2 cut(s) 204, 238
BseDI CCNNGG 1 cut(s) 19
BseGI GGATG 1 cut(s) 205
BseJI GATNNNNATC 2 cut(s) 204, 238
BseNI ACTGG 1 cut(s) 121
BseRI GAGGAG 1 cut(s) 240
BseXI GCAGC 3 cut(s) 46, 80, 109
BsgI GTGCAG 1 cut(s) 87
BshFI GGCC 1 cut(s) 45
BsiHKAI GWGCWC 1 cut(s) 223
BsiHKCI CYCGRG 1 cut(s) 273
BsiSI CCGG 1 cut(s) 63
BsnI GGCC 1 cut(s) 45
BsoBI CYCGRG 1 cut(s) 273
Bsp1286I GDGCHC 1 cut(s) 223
Bsp143I GATC 1 cut(s) 205
BspACI CCGC 1 cut(s) 231
BspANI GGCC 1 cut(s) 45
BspMAI CTGCAG 1 cut(s) 127
BspPI GGATC 1 cut(s) 213
BsrFI RCCGGY 1 cut(s) 62
BsrI ACTGG 1 cut(s) 121
BssAI RCCGGY 1 cut(s) 62
BssECI CCNNGG 1 cut(s) 19
BssMI GATC 1 cut(s) 205
BssT1I CCWWGG 1 cut(s) 19
Bst4CI ACNGT 1 cut(s) 8
BstAPI GCANNNNNTGC 1 cut(s) 59
BstC8I GCNNGC 1 cut(s) 33
BstF5I GGATG 1 cut(s) 205
BstKTI GATC 1 cut(s) 208
BstMBI GATC 1 cut(s) 205
BstMWI GCNNNNNNNGC 3 cut(s) 59, 65, 68
BstSFI CTRYAG 1 cut(s) 123
BstV1I GCAGC 3 cut(s) 46, 80, 109
BstX2I RGATCY 1 cut(s) 205
BstYI RGATCY 1 cut(s) 205
BsuRI GGCC 1 cut(s) 45
BtsCI GGATG 1 cut(s) 205
Cac8I GCNNGC 1 cut(s) 33
Cfr10I RCCGGY 1 cut(s) 62
Csp6I GTAC 1 cut(s) 157
CviJI RGCY 5 cut(s) 18, 31, 45, 71, 122
CviKI_1 RGCY 5 cut(s) 18, 31, 45, 71, 122
CviQI GTAC 1 cut(s) 157
DpnI GATC 1 cut(s) 207
DpnII GATC 1 cut(s) 205
EaeI YGGCCR 1 cut(s) 43
Eco130I CCWWGG 1 cut(s) 19
Eco88I CYCGRG 1 cut(s) 273
EcoT14I CCWWGG 1 cut(s) 19
EcoT22I ATGCAT 1 cut(s) 55
ErhI CCWWGG 1 cut(s) 19
FaiI YATR 1 cut(s) 197
Fnu4HI GCNGC 3 cut(s) 60, 69, 123
FokI GGATG 1 cut(s) 212
Fsp4HI GCNGC 3 cut(s) 60, 69, 123
FspBI CTAG 1 cut(s) 167
GluI GCNGC 3 cut(s) 60, 69, 123
GsuI CTGGAG 1 cut(s) 138
HaeIII GGCC 1 cut(s) 45
HapII CCGG 1 cut(s) 63
HincII GTYRAC 1 cut(s) 11
HindII GTYRAC 1 cut(s) 11
HinfI GANTC 3 cut(s) 25, 110, 276
HpaII CCGG 1 cut(s) 63
HphI GGTGA 2 cut(s) 160, 256
Hpy166II GTNNAC 1 cut(s) 11
Hpy188I TCNGA 4 cut(s) 136, 164, 218, 281
Hpy188III TCNNGA 2 cut(s) 209, 273
Hpy8I GTNNAC 1 cut(s) 11
Hpy99I CGWCG 1 cut(s) 78
HpyCH4III ACNGT 1 cut(s) 8
HpyCH4V TGCA 4 cut(s) 35, 53, 68, 125
HpyF10VI GCNNNNNNNGC 3 cut(s) 59, 65, 68
Kzo9I GATC 1 cut(s) 205
LmnI GCTCC 1 cut(s) 119
LpnPI CCDG 5 cut(s) 76, 102, 111, 173, 194
Lsp1109I GCAGC 3 cut(s) 46, 80, 109
LweI GCATC 2 cut(s) 40, 62
MaeI CTAG 1 cut(s) 167
MaeIII GTNAC 2 cut(s) 79, 244
MalI GATC 1 cut(s) 207
MboI GATC 1 cut(s) 205
MboII GAAGA 2 cut(s) 103, 106
MflI RGATCY 1 cut(s) 205
MhlI GDGCHC 1 cut(s) 223
MmeI TCCRAC 1 cut(s) 187
MnlI CCTC 2 cut(s) 196, 261
Mph1103I ATGCAT 1 cut(s) 55
MspI CCGG 1 cut(s) 63
MwoI GCNNNNNNNGC 3 cut(s) 59, 65, 68
NdeII GATC 1 cut(s) 205
NmeAIII GCCGAG 1 cut(s) 71
NmuCI GTSAC 1 cut(s) 79
NsiI ATGCAT 1 cut(s) 55
PaeR7I CTCGAG 1 cut(s) 273
PfeI GAWTC 2 cut(s) 25, 110
PkrI GCNGC 3 cut(s) 61, 70, 124
PstI CTGCAG 1 cut(s) 127
PsuI RGATCY 1 cut(s) 205
RsaI GTAC 1 cut(s) 158
RsaNI GTAC 1 cut(s) 157
SatI GCNGC 3 cut(s) 60, 69, 123
Sau3AI GATC 1 cut(s) 205
ScaI AGTACT 1 cut(s) 158
SduI GDGCHC 1 cut(s) 223
SetI ASST 3 cut(s) 33, 73, 124
SfaNI GCATC 2 cut(s) 40, 62
SfcI CTRYAG 1 cut(s) 123
Sfr274I CTCGAG 1 cut(s) 273
SlaI CTCGAG 1 cut(s) 273
SmlI CTYRAG 1 cut(s) 273
SmoI CTYRAG 1 cut(s) 273
SsiI CCGC 1 cut(s) 231
SspMI CTAG 1 cut(s) 167
StyI CCWWGG 1 cut(s) 19
TaaI ACNGT 1 cut(s) 8
TaqI TCGA 2 cut(s) 225, 274
TatI WGTACW 1 cut(s) 156
TfiI GAWTC 2 cut(s) 25, 110
TseFI GTSAC 1 cut(s) 79
TseI GCWGC 3 cut(s) 59, 68, 122
Tsp45I GTSAC 1 cut(s) 79
TspDTI ATGAA 1 cut(s) 17
XhoI CTCGAG 1 cut(s) 273
XspI CTAG 1 cut(s) 167
ZrmI AGTACT 1 cut(s) 158
Zsp2I ATGCAT 1 cut(s) 55
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.