FvH4_1g07790

Survival protein SurE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0002356
Physical Location & Seq
Forward (+)
4130352 .. 4134681
4330 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g07790.t4

Sequence Viewer

Length: 1170 bp
ATGACAACCTCTCTGAAAACCAATTTCATGCCTCCGAGTTTGATCTCGAATCTTCAACAAGTTTTGGCTCTCAAAAGTGATGCTACAGAGAAGCATGCTTCTGAACCAAACAAAGTTTCTTGTAATTCTTCTTCTTCTTCATGTTGCTCTTTGCTGCCTTCTGAAGACAAGCAGTGTCCAAAGCCAGTGGTTTTAGTCACAAATGGAGAGGGCATCGACTCTCCTGGTCTCACATTTCTTGTCCAAGCTCTCCTGGATTCTCATCTTGATGTTTACGTCTGCGCTCCTAAATCAGATAGATCAGTGGCTGGCCACTCTGTAACTGTTGGTGAGACAATTTCAGTGTCTTCTGCACAAATCAATGGCGCCACGGCCTTTGAAGTATCCGGGACTCCTGCGGATTGTGTCTCTTTAGCATTATCAGGAGCACTGTTCAACTTTTCAAGGCCTACTTTGGTAATCAGTGGAATAAACAGAGGATCAAGTTCTGGAATCAGCTTGTTCTACTCAGGTGCTGTTGCTGGAGCTAGAGAGGCATTGCTATGCGGTGTACCCTCTCTGTGCATATCAATGAATTGGAAGAAGGATGTAAGCTGTGAAAGTGACATGAAGGATGCAGCGGCTGTGTGCTCACCATTGATATATGCAACTGTAAAGGGCATCCAGGAGGGAGTTTTCCCCAACAGTTGTTTACTCAATATTGAGATTCCGTGGTGTCCTTTGACAAATAAGGGCTTCAAGGTGACGAAGCAGAGTCAGTGGAGGTCCTCTTTGAGCTGGAAAGCTGTGCCAACAAAAAAACATCCTCCCCCTGCAAATTTCATGTCCAGCCAGCAAAGCCTTGGTATTCAACTAGCACAGCTTGGCCGCGAAGCTTCAATAGCTGGTGCAGCTCGCCGCTTGAACTCTCAGCGCAAGAATGTAGAGATTGAATCGGTTGGTGTAGCCAGAAAATTGAGCTCCCAGAAAACCTTAAAATTCTTTCGCTTAGAGTTCTTAGAGGAGCAACAGGAAAATGCAGATGAAGATCTAGATATCAGAGCACTTGAAGATGGATTTGTTACGATTACTCCTATCTGTTTATCTCCAACTGTTCAATCTGAAATCCAAACGTCAGTGTCAAATTGGATTGCTGGTGCAGTACTTTCGAAAAATCAGTTGGCATTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 ko00760 ko01100 ko01110 map00230 map00240 map00760 map01100 map01110
Pfam Domains
Protein Families
SurE

Protein Analysis

390

Amino Acids

41.46

Weight (kDa)

6.88

Isoelectric Point (pI)

49.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SurE PF01975 47 - 239 2.2e-50 Survival protein SurE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 365
AccII CGCG 1 cut(s) 870
AciI CCGC 5 cut(s) 398, 546, 620, 868, 898
AclWI GGATC 1 cut(s) 487
AcoI YGGCCR 2 cut(s) 310, 865
AcsI RAATTY 2 cut(s) 817, 977
AcuI CTGAAG 1 cut(s) 183
AcyI GRCGYC 1 cut(s) 366
AfaI GTAC 2 cut(s) 552, 1143
AjnI CCWGG 3 cut(s) 223, 252, 663
AjuI GAANNNNNNNTTGG 3 cut(s) 100, 132, 1142
Alw21I GWGCWC 4 cut(s) 430, 632, 962, 1045
Alw26I GTCTC 3 cut(s) 233, 326, 412
AlwI GGATC 1 cut(s) 487
AlwNI CAGNNNCTG 3 cut(s) 308, 515, 623
AoxI GGCC 4 cut(s) 310, 372, 446, 865
ApeKI GCWGC 3 cut(s) 154, 617, 890
ApoI RAATTY 2 cut(s) 817, 977
ArsI GACNNNNNNTTYG 2 cut(s) 809, 841
AspLEI GCGC 3 cut(s) 284, 368, 915
AspS9I GGNCC 1 cut(s) 765
AsuC2I CCSGG 1 cut(s) 388
AsuHPI GGTGA 3 cut(s) 341, 624, 754
AsuII TTCGAA 1 cut(s) 1148
AvaII GGWCC 1 cut(s) 765
BalI TGGCCA 1 cut(s) 312
BanI GGYRCC 1 cut(s) 365
BanII GRGCYC 1 cut(s) 962
BarI GAAGNNNNNNTAC 2 cut(s) 115, 147
BbsI GAAGAC 2 cut(s) 171, 339
Bbv12I GWGCWC 4 cut(s) 430, 632, 962, 1045
BbvI GCAGC 3 cut(s) 141, 629, 902
BccI CCATC 1 cut(s) 1046
BceAI ACGGC 1 cut(s) 387
BcgI CGANNNNNNTGC 2 cut(s) 1128, 1162
BciT130I CCWGG 3 cut(s) 225, 254, 665
BciVI GTATCC 1 cut(s) 394
BcnI CCSGG 1 cut(s) 388
BcoDI GTCTC 3 cut(s) 233, 326, 412
BfaI CTAG 3 cut(s) 528, 854, 1031
BfmI CTRYAG 1 cut(s) 84
BfoI RGCGCY 1 cut(s) 369
BfuI GTATCC 1 cut(s) 394
BglII AGATCT 1 cut(s) 1027
BisI GCNGC 6 cut(s) 155, 618, 621, 868, 891, 898
BlsI GCNGC 6 cut(s) 156, 619, 622, 869, 892, 899
BmcAI AGTACT 1 cut(s) 1143
Bme1390I CCNGG 4 cut(s) 225, 254, 388, 665
Bme18I GGWCC 1 cut(s) 765
BmgT120I GGNCC 1 cut(s) 765
BmiI GGNNCC 1 cut(s) 367
BmrFI CCNGG 4 cut(s) 225, 254, 388, 665
BmsI GCATC 4 cut(s) 70, 222, 604, 669
BpiI GAAGAC 2 cut(s) 171, 339
BpmI CTGGAG 1 cut(s) 543
Bpu14I TTCGAA 1 cut(s) 1148
BpuMI CCSGG 1 cut(s) 388
BsaBI GATNNNNATC 2 cut(s) 261, 1026
BsaHI GRCGYC 1 cut(s) 366
BsaI GGTCTC 1 cut(s) 233
BsaJI CCNNGG 3 cut(s) 369, 710, 841
BsaXI ACNNNNNCTCC 2 cut(s) 1054, 1084
Bse1I ACTGG 1 cut(s) 185
Bse3DI GCAATG 1 cut(s) 536
Bse8I GATNNNNATC 2 cut(s) 261, 1026
BseBI CCWGG 3 cut(s) 225, 254, 665
BseDI CCNNGG 3 cut(s) 369, 710, 841
BseGI GGATG 4 cut(s) 592, 619, 660, 802
BseJI GATNNNNATC 2 cut(s) 261, 1026
BseMI GCAATG 1 cut(s) 536
BseMII CTCAG 2 cut(s) 522, 923
BseNI ACTGG 1 cut(s) 185
BseRI GAGGAG 1 cut(s) 1016
BseXI GCAGC 3 cut(s) 141, 629, 902
BsgI GTGCAG 3 cut(s) 336, 909, 1158
Bsh1236I CGCG 1 cut(s) 870
BshFI GGCC 4 cut(s) 312, 374, 448, 867
BshNI GGYRCC 1 cut(s) 365
BsiHKAI GWGCWC 4 cut(s) 430, 632, 962, 1045
BsiSI CCGG 1 cut(s) 387
BslFI GGGAC 1 cut(s) 403
BsmAI GTCTC 3 cut(s) 233, 326, 412
BsmFI GGGAC 1 cut(s) 403
BsnI GGCC 4 cut(s) 312, 374, 448, 867
Bso31I GGTCTC 1 cut(s) 233
Bsp119I TTCGAA 1 cut(s) 1148
Bsp1286I GDGCHC 4 cut(s) 430, 632, 962, 1045
Bsp143I GATC 4 cut(s) 42, 299, 479, 1027
BspACI CCGC 5 cut(s) 398, 546, 620, 868, 898
BspANI GGCC 4 cut(s) 312, 374, 448, 867
BspCNI CTCAG 2 cut(s) 521, 922
BspFNI CGCG 1 cut(s) 870
BspLI GGNNCC 1 cut(s) 367
BspPI GGATC 1 cut(s) 487
BspT104I TTCGAA 1 cut(s) 1148
BspT107I GGYRCC 1 cut(s) 365
BspTNI GGTCTC 1 cut(s) 233
BsrDI GCAATG 1 cut(s) 536
BsrI ACTGG 1 cut(s) 185
BssECI CCNNGG 3 cut(s) 369, 710, 841
BssMI GATC 4 cut(s) 42, 299, 479, 1027
BssNI GRCGYC 1 cut(s) 366
BssT1I CCWWGG 1 cut(s) 841
Bst2UI CCWGG 3 cut(s) 225, 254, 665
Bst4CI ACNGT 5 cut(s) 325, 432, 652, 686, 1093
BstACI GRCGYC 1 cut(s) 366
BstBI TTCGAA 1 cut(s) 1148
BstC8I GCNNGC 4 cut(s) 96, 310, 833, 895
BstDEI CTNAG 4 cut(s) 508, 909, 988, 997
BstDSI CCRYGG 2 cut(s) 369, 710
BstF5I GGATG 4 cut(s) 592, 619, 660, 802
BstFNI CGCG 1 cut(s) 870
BstH2I RGCGCY 1 cut(s) 369
BstHHI GCGC 3 cut(s) 284, 368, 915
BstKTI GATC 4 cut(s) 45, 302, 482, 1030
BstMAI GTCTC 3 cut(s) 233, 326, 412
BstMBI GATC 4 cut(s) 42, 299, 479, 1027
BstMWI GCNNNNNNNGC 4 cut(s) 533, 837, 881, 890
BstNI CCWGG 3 cut(s) 225, 254, 665
BstNSI RCATGY 1 cut(s) 98
BstSCI CCNGG 4 cut(s) 223, 252, 386, 663
BstSFI CTRYAG 1 cut(s) 84
BstUI CGCG 1 cut(s) 870
BstV1I GCAGC 3 cut(s) 141, 629, 902
BstV2I GAAGAC 2 cut(s) 171, 339
BstX2I RGATCY 1 cut(s) 1027
BstYI RGATCY 1 cut(s) 1027
BsuI GTATCC 1 cut(s) 394
BsuRI GGCC 4 cut(s) 312, 374, 448, 867
BtgI CCRYGG 2 cut(s) 369, 710
BtsCI GGATG 4 cut(s) 592, 619, 660, 802
BtsI GCAGTG 1 cut(s) 179
BtsIMutI CAGTG 8 cut(s) 179, 192, 309, 348, 428, 469, 764, 1122
Cac8I GCNNGC 4 cut(s) 96, 310, 833, 895
CaiI CAGNNNCTG 3 cut(s) 308, 515, 623
CfoI GCGC 3 cut(s) 284, 368, 915
Cfr13I GGNCC 1 cut(s) 765
Csp6I GTAC 2 cut(s) 551, 1142
CspCI CAANNNNNGTGG 4 cut(s) 168, 203, 358, 393
CviAII CATG 5 cut(s) 28, 95, 141, 607, 823
CviQI GTAC 2 cut(s) 551, 1142
DdeI CTNAG 4 cut(s) 508, 909, 988, 997
DinI GGCGCC 1 cut(s) 367
DpnI GATC 4 cut(s) 44, 301, 481, 1029
DpnII GATC 4 cut(s) 42, 299, 479, 1027
EaeI YGGCCR 2 cut(s) 310, 865
Ecl136II GAGCTC 1 cut(s) 960
Eco130I CCWWGG 1 cut(s) 841
Eco147I AGGCCT 1 cut(s) 448
Eco24I GRGCYC 1 cut(s) 962
Eco31I GGTCTC 1 cut(s) 233
Eco32I GATATC 1 cut(s) 1036
Eco47I GGWCC 1 cut(s) 765
Eco53kI GAGCTC 1 cut(s) 960
Eco57I CTGAAG 1 cut(s) 183
EcoICRI GAGCTC 1 cut(s) 960
EcoO109I RGGNCCY 1 cut(s) 765
EcoRII CCWGG 3 cut(s) 223, 252, 663
EcoRV GATATC 1 cut(s) 1036
EcoT14I CCWWGG 1 cut(s) 841
EcoT38I GRGCYC 1 cut(s) 962
EgeI GGCGCC 1 cut(s) 367
EheI GGCGCC 1 cut(s) 367
ErhI CCWWGG 1 cut(s) 841
FaeI CATG 5 cut(s) 31, 98, 144, 610, 826
FalI AAGNNNNNCTT 2 cut(s) 436, 468
FaqI GGGAC 1 cut(s) 403
FatI CATG 5 cut(s) 27, 94, 140, 606, 822
Fnu4HI GCNGC 6 cut(s) 155, 618, 621, 868, 891, 898
FokI GGATG 4 cut(s) 599, 626, 647, 789
FriOI GRGCYC 1 cut(s) 962
Fsp4HI GCNGC 6 cut(s) 155, 618, 621, 868, 891, 898
FspBI CTAG 3 cut(s) 528, 854, 1031
GlaI GCGC 3 cut(s) 283, 367, 914
GluI GCNGC 6 cut(s) 155, 618, 621, 868, 891, 898
GsuI CTGGAG 1 cut(s) 543
HaeII RGCGCY 1 cut(s) 369
HaeIII GGCC 4 cut(s) 312, 374, 448, 867
HapII CCGG 1 cut(s) 387
HhaI GCGC 3 cut(s) 284, 368, 915
Hin1I GRCGYC 1 cut(s) 366
Hin1II CATG 5 cut(s) 31, 98, 144, 610, 826
Hin6I GCGC 3 cut(s) 282, 366, 913
HinP1I GCGC 3 cut(s) 282, 366, 913
HindIII AAGCTT 1 cut(s) 873
HinfI GANTC 8 cut(s) 49, 218, 257, 391, 492, 706, 754, 932
HpaII CCGG 1 cut(s) 387
HphI GGTGA 3 cut(s) 341, 624, 754
Hpy166II GTNNAC 3 cut(s) 274, 551, 692
Hpy188I TCNGA 7 cut(s) 15, 36, 103, 163, 295, 1040, 1102
Hpy188III TCNNGA 5 cut(s) 46, 266, 423, 489, 1031
Hpy8I GTNNAC 3 cut(s) 274, 551, 692
HpyAV CCTTC 3 cut(s) 168, 577, 604
HpyCH4III ACNGT 5 cut(s) 325, 432, 652, 686, 1093
HpyCH4IV ACGT 2 cut(s) 276, 1112
HpyCH4V TGCA 8 cut(s) 353, 564, 617, 647, 815, 890, 1019, 1139
HpyF10VI GCNNNNNNNGC 4 cut(s) 533, 837, 881, 890
HpyF3I CTNAG 4 cut(s) 508, 909, 988, 997
HpySE526I ACGT 2 cut(s) 276, 1112
Hsp92I GRCGYC 1 cut(s) 366
Hsp92II CATG 5 cut(s) 31, 98, 144, 610, 826
HspAI GCGC 3 cut(s) 282, 366, 913
KasI GGCGCC 1 cut(s) 365
Kzo9I GATC 4 cut(s) 42, 299, 479, 1027
LmnI GCTCC 5 cut(s) 289, 425, 524, 965, 1003
Lsp1109I GCAGC 3 cut(s) 141, 629, 902
LweI GCATC 4 cut(s) 70, 222, 604, 669
MaeI CTAG 3 cut(s) 528, 854, 1031
MaeII ACGT 2 cut(s) 276, 1112
MaeIII GTNAC 5 cut(s) 196, 319, 602, 742, 1060
MalI GATC 4 cut(s) 44, 301, 481, 1029
MboI GATC 4 cut(s) 42, 299, 479, 1027
MflI RGATCY 1 cut(s) 1027
MhlI GDGCHC 4 cut(s) 430, 632, 962, 1045
MlsI TGGCCA 1 cut(s) 312
MluCI AATT 8 cut(s) 22, 124, 336, 574, 817, 953, 977, 1123
MluNI TGGCCA 1 cut(s) 312
Mly113I GGCGCC 1 cut(s) 366
MlyI GAGTC 3 cut(s) 212, 385, 763
MmeI TCCRAC 1 cut(s) 1112
Mox20I TGGCCA 1 cut(s) 312
MscI TGGCCA 1 cut(s) 312
MseI TTAA 1 cut(s) 974
MslI CAYNNNNRTG 3 cut(s) 267, 541, 569
Msp20I TGGCCA 1 cut(s) 312
MspA1I CMGCKG 1 cut(s) 620
MspI CCGG 1 cut(s) 387
MspR9I CCNGG 4 cut(s) 225, 254, 388, 665
MvaI CCWGG 3 cut(s) 225, 254, 665
MvnI CGCG 1 cut(s) 870
MwoI GCNNNNNNNGC 4 cut(s) 533, 837, 881, 890
NarI GGCGCC 1 cut(s) 366
NciI CCSGG 1 cut(s) 388
NdeII GATC 4 cut(s) 42, 299, 479, 1027
NlaIII CATG 5 cut(s) 31, 98, 144, 610, 826
NlaIV GGNNCC 1 cut(s) 367
NmuCI GTSAC 3 cut(s) 196, 602, 742
NspI RCATGY 1 cut(s) 98
NspV TTCGAA 1 cut(s) 1148
PaeI GCATGC 1 cut(s) 98
PceI AGGCCT 1 cut(s) 448
PfeI GAWTC 5 cut(s) 49, 257, 492, 706, 932
PfoI TCCNGGA 3 cut(s) 252, 386, 663
PkrI GCNGC 6 cut(s) 156, 619, 622, 869, 892, 899
PleI GAGTC 3 cut(s) 212, 385, 762
PluTI GGCGCC 1 cut(s) 369
PpsI GAGTC 3 cut(s) 212, 385, 762
PpuMI RGGWCCY 1 cut(s) 765
Psp124BI GAGCTC 1 cut(s) 962
Psp5II RGGWCCY 1 cut(s) 765
Psp6I CCWGG 3 cut(s) 223, 252, 663
PspGI CCWGG 3 cut(s) 223, 252, 663
PspN4I GGNNCC 1 cut(s) 367
PspPI GGNCC 1 cut(s) 765
PspPPI RGGWCCY 1 cut(s) 765
PstNI CAGNNNCTG 3 cut(s) 308, 515, 623
PsuI RGATCY 1 cut(s) 1027
RsaI GTAC 2 cut(s) 552, 1143
RsaNI GTAC 2 cut(s) 551, 1142
RseI CAYNNNNRTG 3 cut(s) 267, 541, 569
SacI GAGCTC 1 cut(s) 962
SaqAI TTAA 1 cut(s) 974
SatI GCNGC 6 cut(s) 155, 618, 621, 868, 891, 898
Sau3AI GATC 4 cut(s) 42, 299, 479, 1027
Sau96I GGNCC 1 cut(s) 765
ScaI AGTACT 1 cut(s) 1143
SchI GAGTC 3 cut(s) 212, 385, 763
ScrFI CCNGG 4 cut(s) 225, 254, 388, 665
SduI GDGCHC 4 cut(s) 430, 632, 962, 1045
SfaNI GCATC 4 cut(s) 70, 222, 604, 669
SfcI CTRYAG 1 cut(s) 84
SfoI GGCGCC 1 cut(s) 367
SfuI TTCGAA 1 cut(s) 1148
SinI GGWCC 1 cut(s) 765
SmiMI CAYNNNNRTG 3 cut(s) 267, 541, 569
SphI GCATGC 1 cut(s) 98
Sse9I AATT 8 cut(s) 22, 124, 336, 574, 817, 953, 977, 1123
SseBI AGGCCT 1 cut(s) 448
SsiI CCGC 5 cut(s) 398, 546, 620, 868, 898
SspDI GGCGCC 1 cut(s) 365
SspI AATATT 1 cut(s) 700
SspMI CTAG 3 cut(s) 528, 854, 1031
SstI GAGCTC 1 cut(s) 962
StuI AGGCCT 1 cut(s) 448
StyD4I CCNGG 4 cut(s) 223, 252, 386, 663
StyI CCWWGG 1 cut(s) 841
TaaI ACNGT 5 cut(s) 325, 432, 652, 686, 1093
TaiI ACGT 2 cut(s) 279, 1115
TaqI TCGA 3 cut(s) 47, 216, 1148
TasI AATT 8 cut(s) 22, 124, 336, 574, 817, 953, 977, 1123
TatI WGTACW 1 cut(s) 1141
TauI GCSGC 3 cut(s) 623, 870, 900
TfiI GAWTC 5 cut(s) 49, 257, 492, 706, 932
Tru1I TTAA 1 cut(s) 974
Tru9I TTAA 1 cut(s) 974
TscAI CASTG 8 cut(s) 179, 192, 309, 348, 435, 469, 764, 1122
TseFI GTSAC 3 cut(s) 196, 602, 742
TseI GCWGC 3 cut(s) 154, 617, 890
Tsp45I GTSAC 3 cut(s) 196, 602, 742
TspDTI ATGAA 6 cut(s) 16, 129, 587, 623, 811, 1038
TspGWI ACGGA 1 cut(s) 699
TspRI CASTG 8 cut(s) 179, 192, 309, 348, 435, 469, 764, 1122
VpaK11BI GGWCC 1 cut(s) 765
XapI RAATTY 2 cut(s) 817, 977
XbaI TCTAGA 1 cut(s) 1030
XceI RCATGY 1 cut(s) 98
XcmI CCANNNNNNNNNTGG 1 cut(s) 839
XspI CTAG 3 cut(s) 528, 854, 1031
ZrmI AGTACT 1 cut(s) 1143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.