Rmu_sc0002126.1_g000013

Survival protein SurE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002126.1
OG0002356
Physical Location & Seq
Reverse (-)
76062 .. 78270
2209 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002126.1_g000013.1.cds

Sequence Viewer

Length: 1185 bp
atgacgacctctctgaaaagcagtttcatgcctccgagcttgatctcgaatcttcaacaagttttggctctcaaaagcgacggtgcagagaagcatgcttctgaaccaaacaaagtttcttgtaattcttcttcctcttcatgttgcgctttgatgccttctgaggacactaaagacaagcagtgtccaaagccagtggttttagtcacaaatggagagggaatcgagtctcctggcctcacatttctcgtccaagctctccttctcgattctcatcttgaggtctgcgtctgcgctcctaaatcagatagatcagtggctggccactctgtaactgttggtgagacaatttcagtgtcttctgcacaaatcaatggcgccacggcttttgaagtttccgggactcctgcggattgtatctctttagcattatcaggggcattgttctccaacttttcaaagcctgctttggtagtcagtggaataaacagaggatcaagttctggaatcaacatgttctactcgggtgctgttgctggagctagagaggcgttgctatgcggtgtaccctctctgtgcatatcaatgaattggaagaaggatgtaagctgtgaaagtgatatgaaggatgcagccactgtgtgctcaccgttgatatgtgcagctgtaaaaagcatccaggagggagttttccccaaaagttgtttactcaatattgagattcctagttgtcctttgacaaataagggcttcaaagtgaccaagcagagtcagtggaggtcctctttgagctggaaagctatgtcaacaaacaaacatcctccccctgcaaatttcatgtccaatcagcaaagccttggtattcaactagcacagctcagccgcgaagcttcaatagctggtgcagctcgccgcttgaactctcagcgcaagactgtagaggttgaatcggttggtgtagccagaaaaatgagctcccaaaaaacagtaaaattcttccgtttagagttcttagaggagcagcaggaatatgtagatgaagatctagatatcagagcacttgaagatggatttgttgcgattactccgatttgcttatctccatctgttcaatcggaaattcaaacgtcagtgtcgaattggattgctggagcagtactttcgaacaaccggttggcattatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 ko00760 ko01100 ko01110 map00230 map00240 map00760 map01100 map01110
Pfam Domains
Protein Families
SurE

Protein Analysis

394

Amino Acids

41.85

Weight (kDa)

6.87

Isoelectric Point (pI)

53.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 377
AccII CGCG 1 cut(s) 885
AciI CCGC 4 cut(s) 410, 561, 883, 913
AclWI GGATC 1 cut(s) 502
AcoI YGGCCR 1 cut(s) 322
AcsI RAATTY 3 cut(s) 832, 992, 1119
AcyI GRCGYC 1 cut(s) 378
AdeI CACNNNGTG 1 cut(s) 642
AfaI GTAC 2 cut(s) 567, 1158
AflIII ACRYGT 1 cut(s) 513
AgeI ACCGGT 1 cut(s) 1170
AjnI CCWGG 2 cut(s) 232, 678
AjuI GAANNNNNNNTTGG 5 cut(s) 100, 132, 246, 278, 1157
Alw21I GWGCWC 3 cut(s) 647, 977, 1060
Alw26I GTCTC 2 cut(s) 234, 338
AlwI GGATC 1 cut(s) 502
AlwNI CAGNNNCTG 2 cut(s) 320, 638
Ama87I CYCGRG 1 cut(s) 523
AoxI GGCC 2 cut(s) 235, 322
ApeKI GCWGC 4 cut(s) 632, 662, 905, 1021
ApoI RAATTY 3 cut(s) 832, 992, 1119
ArsI GACNNNNNNTTYG 2 cut(s) 824, 856
AsiGI ACCGGT 1 cut(s) 1170
AspLEI GCGC 4 cut(s) 149, 296, 380, 930
AspS9I GGNCC 1 cut(s) 780
AsuC2I CCSGG 1 cut(s) 400
AsuHPI GGTGA 2 cut(s) 353, 639
AsuII TTCGAA 1 cut(s) 1163
AvaI CYCGRG 1 cut(s) 523
AvaII GGWCC 1 cut(s) 780
BalI TGGCCA 1 cut(s) 324
BanI GGYRCC 1 cut(s) 377
BanII GRGCYC 1 cut(s) 977
BarI GAAGNNNNNNTAC 2 cut(s) 115, 147
BbsI GAAGAC 1 cut(s) 351
Bbv12I GWGCWC 3 cut(s) 647, 977, 1060
BbvI GCAGC 4 cut(s) 644, 674, 917, 1033
BccI CCATC 2 cut(s) 1061, 1111
BceAI ACGGC 1 cut(s) 399
BcgI CGANNNNNNTGC 2 cut(s) 1143, 1177
BciT130I CCWGG 2 cut(s) 234, 680
BcnI CCSGG 1 cut(s) 400
BcoDI GTCTC 2 cut(s) 234, 338
BfaI CTAG 4 cut(s) 543, 726, 869, 1046
BfmI CTRYAG 1 cut(s) 936
BfoI RGCGCY 1 cut(s) 381
BglII AGATCT 1 cut(s) 1042
BisI GCNGC 6 cut(s) 633, 663, 883, 906, 913, 1022
BlpI GCTNAGC 1 cut(s) 878
BlsI GCNGC 6 cut(s) 634, 664, 884, 907, 914, 1023
BmcAI AGTACT 1 cut(s) 1158
Bme1390I CCNGG 3 cut(s) 234, 400, 680
Bme18I GGWCC 1 cut(s) 780
BmeT110I CYCGRG 1 cut(s) 523
BmgT120I GGNCC 1 cut(s) 780
BmiI GGNNCC 1 cut(s) 379
BmrFI CCNGG 3 cut(s) 234, 400, 680
BmsI GCATC 3 cut(s) 144, 619, 684
BpiI GAAGAC 1 cut(s) 351
BpmI CTGGAG 2 cut(s) 558, 1170
Bpu1102I GCTNAGC 1 cut(s) 878
Bpu14I TTCGAA 1 cut(s) 1163
BpuEI CTTGAG 1 cut(s) 299
BpuMI CCSGG 1 cut(s) 400
BsaBI GATNNNNATC 2 cut(s) 273, 1041
BsaHI GRCGYC 1 cut(s) 378
BsaJI CCNNGG 2 cut(s) 381, 856
BsaWI WCCGGW 1 cut(s) 1170
Bse118I RCCGGY 1 cut(s) 1170
Bse1I ACTGG 1 cut(s) 194
Bse8I GATNNNNATC 2 cut(s) 273, 1041
BseBI CCWGG 2 cut(s) 234, 680
BseDI CCNNGG 2 cut(s) 381, 856
BseGI GGATG 4 cut(s) 607, 634, 675, 817
BseJI GATNNNNATC 2 cut(s) 273, 1041
BseMII CTCAG 3 cut(s) 153, 892, 938
BseNI ACTGG 1 cut(s) 194
BseRI GAGGAG 1 cut(s) 1031
BseXI GCAGC 4 cut(s) 644, 674, 917, 1033
BsgI GTGCAG 4 cut(s) 105, 348, 681, 924
Bsh1236I CGCG 1 cut(s) 885
BshFI GGCC 2 cut(s) 237, 324
BshNI GGYRCC 1 cut(s) 377
BshTI ACCGGT 1 cut(s) 1170
BsiHKAI GWGCWC 3 cut(s) 647, 977, 1060
BsiHKCI CYCGRG 1 cut(s) 523
BsiSI CCGG 2 cut(s) 399, 1171
BslFI GGGAC 1 cut(s) 415
BsmAI GTCTC 2 cut(s) 234, 338
BsmFI GGGAC 1 cut(s) 415
BsnI GGCC 2 cut(s) 237, 324
BsoBI CYCGRG 1 cut(s) 523
Bsp119I TTCGAA 1 cut(s) 1163
Bsp1286I GDGCHC 3 cut(s) 647, 977, 1060
Bsp143I GATC 4 cut(s) 42, 311, 494, 1042
Bsp1720I GCTNAGC 1 cut(s) 878
BspACI CCGC 4 cut(s) 410, 561, 883, 913
BspANI GGCC 2 cut(s) 237, 324
BspCNI CTCAG 3 cut(s) 154, 891, 937
BspFNI CGCG 1 cut(s) 885
BspLI GGNNCC 1 cut(s) 379
BspPI GGATC 1 cut(s) 502
BspT104I TTCGAA 1 cut(s) 1163
BspT107I GGYRCC 1 cut(s) 377
BsrFI RCCGGY 1 cut(s) 1170
BsrI ACTGG 1 cut(s) 194
BssAI RCCGGY 1 cut(s) 1170
BssECI CCNNGG 2 cut(s) 381, 856
BssMI GATC 4 cut(s) 42, 311, 494, 1042
BssNI GRCGYC 1 cut(s) 378
BssT1I CCWWGG 1 cut(s) 856
Bst2UI CCWGG 2 cut(s) 234, 680
Bst4CI ACNGT 6 cut(s) 83, 337, 640, 651, 937, 988
Bst6I CTCTTC 1 cut(s) 142
BstACI GRCGYC 1 cut(s) 378
BstBI TTCGAA 1 cut(s) 1163
BstC8I GCNNGC 4 cut(s) 96, 322, 465, 910
BstDEI CTNAG 4 cut(s) 162, 878, 924, 1012
BstDSI CCRYGG 1 cut(s) 381
BstF5I GGATG 4 cut(s) 607, 634, 675, 817
BstFNI CGCG 1 cut(s) 885
BstH2I RGCGCY 1 cut(s) 381
BstHHI GCGC 4 cut(s) 149, 296, 380, 930
BstKTI GATC 4 cut(s) 45, 314, 497, 1045
BstMAI GTCTC 2 cut(s) 234, 338
BstMBI GATC 4 cut(s) 42, 311, 494, 1042
BstMWI GCNNNNNNNGC 3 cut(s) 548, 896, 905
BstNI CCWGG 2 cut(s) 234, 680
BstNSI RCATGY 2 cut(s) 98, 517
BstSCI CCNGG 3 cut(s) 232, 398, 678
BstSFI CTRYAG 1 cut(s) 936
BstUI CGCG 1 cut(s) 885
BstV1I GCAGC 4 cut(s) 644, 674, 917, 1033
BstV2I GAAGAC 1 cut(s) 351
BstX2I RGATCY 1 cut(s) 1042
BstYI RGATCY 1 cut(s) 1042
BsuRI GGCC 2 cut(s) 237, 324
BtgI CCRYGG 1 cut(s) 381
BtsCI GGATG 4 cut(s) 607, 634, 675, 817
BtsI GCAGTG 1 cut(s) 188
BtsIMutI CAGTG 8 cut(s) 188, 201, 321, 360, 484, 636, 779, 1137
Cac8I GCNNGC 4 cut(s) 96, 322, 465, 910
CaiI CAGNNNCTG 2 cut(s) 320, 638
CfoI GCGC 4 cut(s) 149, 296, 380, 930
Cfr10I RCCGGY 1 cut(s) 1170
Cfr13I GGNCC 1 cut(s) 780
CseI GACGC 1 cut(s) 277
Csp6I GTAC 2 cut(s) 566, 1157
CspAI ACCGGT 1 cut(s) 1170
CspCI CAANNNNNGTGG 4 cut(s) 177, 212, 370, 405
CviAII CATG 5 cut(s) 28, 95, 141, 514, 838
CviQI GTAC 2 cut(s) 566, 1157
DdeI CTNAG 4 cut(s) 162, 878, 924, 1012
DinI GGCGCC 1 cut(s) 379
DpnI GATC 4 cut(s) 44, 313, 496, 1044
DpnII GATC 4 cut(s) 42, 311, 494, 1042
DraIII CACNNNGTG 1 cut(s) 642
EaeI YGGCCR 1 cut(s) 322
Eam1104I CTCTTC 1 cut(s) 142
EarI CTCTTC 1 cut(s) 142
Ecl136II GAGCTC 1 cut(s) 975
Eco130I CCWWGG 1 cut(s) 856
Eco24I GRGCYC 1 cut(s) 977
Eco32I GATATC 1 cut(s) 1051
Eco47I GGWCC 1 cut(s) 780
Eco53kI GAGCTC 1 cut(s) 975
Eco88I CYCGRG 1 cut(s) 523
EcoICRI GAGCTC 1 cut(s) 975
EcoO109I RGGNCCY 1 cut(s) 780
EcoRII CCWGG 2 cut(s) 232, 678
EcoRV GATATC 1 cut(s) 1051
EcoT14I CCWWGG 1 cut(s) 856
EcoT38I GRGCYC 1 cut(s) 977
EgeI GGCGCC 1 cut(s) 379
EheI GGCGCC 1 cut(s) 379
ErhI CCWWGG 1 cut(s) 856
FaeI CATG 5 cut(s) 31, 98, 144, 517, 841
FalI AAGNNNNNCTT 2 cut(s) 246, 278
FaqI GGGAC 1 cut(s) 415
FatI CATG 5 cut(s) 27, 94, 140, 513, 837
Fnu4HI GCNGC 6 cut(s) 633, 663, 883, 906, 913, 1022
FokI GGATG 4 cut(s) 614, 641, 662, 804
FriOI GRGCYC 1 cut(s) 977
Fsp4HI GCNGC 6 cut(s) 633, 663, 883, 906, 913, 1022
FspBI CTAG 4 cut(s) 543, 726, 869, 1046
GlaI GCGC 4 cut(s) 148, 295, 379, 929
GluI GCNGC 6 cut(s) 633, 663, 883, 906, 913, 1022
GsuI CTGGAG 2 cut(s) 558, 1170
HaeII RGCGCY 1 cut(s) 381
HaeIII GGCC 2 cut(s) 237, 324
HapII CCGG 2 cut(s) 399, 1171
HgaI GACGC 1 cut(s) 277
HhaI GCGC 4 cut(s) 149, 296, 380, 930
Hin1I GRCGYC 1 cut(s) 378
Hin1II CATG 5 cut(s) 31, 98, 144, 517, 841
Hin6I GCGC 4 cut(s) 147, 294, 378, 928
HinP1I GCGC 4 cut(s) 147, 294, 378, 928
HincII GTYRAC 1 cut(s) 807
HindII GTYRAC 1 cut(s) 807
HindIII AAGCTT 1 cut(s) 888
HinfI GANTC 9 cut(s) 49, 222, 227, 269, 403, 507, 721, 769, 947
HpaII CCGG 2 cut(s) 399, 1171
HphI GGTGA 2 cut(s) 353, 639
Hpy166II GTNNAC 3 cut(s) 566, 707, 807
Hpy188I TCNGA 8 cut(s) 15, 36, 103, 163, 307, 1055, 1089, 1117
Hpy188III TCNNGA 5 cut(s) 46, 266, 278, 504, 1046
Hpy8I GTNNAC 3 cut(s) 566, 707, 807
Hpy99I CGWCG 1 cut(s) 83
HpyAV CCTTC 4 cut(s) 168, 272, 592, 619
HpyCH4III ACNGT 6 cut(s) 83, 337, 640, 651, 937, 988
HpyCH4IV ACGT 1 cut(s) 1127
HpyCH4V TGCA 7 cut(s) 86, 365, 579, 632, 662, 830, 905
HpyF10VI GCNNNNNNNGC 3 cut(s) 548, 896, 905
HpyF3I CTNAG 4 cut(s) 162, 878, 924, 1012
HpySE526I ACGT 1 cut(s) 1127
Hsp92I GRCGYC 1 cut(s) 378
Hsp92II CATG 5 cut(s) 31, 98, 144, 517, 841
HspAI GCGC 4 cut(s) 147, 294, 378, 928
KasI GGCGCC 1 cut(s) 377
Kzo9I GATC 4 cut(s) 42, 311, 494, 1042
LmnI GCTCC 5 cut(s) 301, 539, 980, 1018, 1151
Lsp1109I GCAGC 4 cut(s) 644, 674, 917, 1033
LweI GCATC 3 cut(s) 144, 619, 684
MaeI CTAG 4 cut(s) 543, 726, 869, 1046
MaeII ACGT 1 cut(s) 1127
MaeIII GTNAC 3 cut(s) 205, 331, 757
MalI GATC 4 cut(s) 44, 313, 496, 1044
MboI GATC 4 cut(s) 42, 311, 494, 1042
MboII GAAGA 9 cut(s) 44, 120, 123, 129, 351, 607, 988, 1052, 1076
MflI RGATCY 1 cut(s) 1042
MhlI GDGCHC 3 cut(s) 647, 977, 1060
MlsI TGGCCA 1 cut(s) 324
MluCI AATT 7 cut(s) 124, 348, 589, 832, 992, 1119, 1138
MluNI TGGCCA 1 cut(s) 324
Mly113I GGCGCC 1 cut(s) 378
MlyI GAGTC 3 cut(s) 236, 397, 778
MmeI TCCRAC 1 cut(s) 474
Mox20I TGGCCA 1 cut(s) 324
MscI TGGCCA 1 cut(s) 324
MslI CAYNNNNRTG 1 cut(s) 584
Msp20I TGGCCA 1 cut(s) 324
MspA1I CMGCKG 1 cut(s) 665
MspI CCGG 2 cut(s) 399, 1171
MspR9I CCNGG 3 cut(s) 234, 400, 680
MvaI CCWGG 2 cut(s) 234, 680
MvnI CGCG 1 cut(s) 885
MwoI GCNNNNNNNGC 3 cut(s) 548, 896, 905
NarI GGCGCC 1 cut(s) 378
NciI CCSGG 1 cut(s) 400
NdeII GATC 4 cut(s) 42, 311, 494, 1042
NlaIII CATG 5 cut(s) 31, 98, 144, 517, 841
NlaIV GGNNCC 1 cut(s) 379
NmuCI GTSAC 2 cut(s) 205, 757
NspI RCATGY 2 cut(s) 98, 517
NspV TTCGAA 1 cut(s) 1163
PaeI GCATGC 1 cut(s) 98
PciI ACATGT 1 cut(s) 513
PcsI WCGNNNNNNNCGW 1 cut(s) 1133
PfeI GAWTC 6 cut(s) 49, 222, 269, 507, 721, 947
PfoI TCCNGGA 2 cut(s) 398, 678
PinAI ACCGGT 1 cut(s) 1170
PkrI GCNGC 6 cut(s) 634, 664, 884, 907, 914, 1023
PleI GAGTC 3 cut(s) 235, 397, 777
PluTI GGCGCC 1 cut(s) 381
PpsI GAGTC 3 cut(s) 235, 397, 777
PpuMI RGGWCCY 1 cut(s) 780
PscI ACATGT 1 cut(s) 513
Psp124BI GAGCTC 1 cut(s) 977
Psp5II RGGWCCY 1 cut(s) 780
Psp6I CCWGG 2 cut(s) 232, 678
PspGI CCWGG 2 cut(s) 232, 678
PspN4I GGNNCC 1 cut(s) 379
PspPI GGNCC 1 cut(s) 780
PspPPI RGGWCCY 1 cut(s) 780
PstNI CAGNNNCTG 2 cut(s) 320, 638
PsuI RGATCY 1 cut(s) 1042
PvuII CAGCTG 1 cut(s) 665
RsaI GTAC 2 cut(s) 567, 1158
RsaNI GTAC 2 cut(s) 566, 1157
RseI CAYNNNNRTG 1 cut(s) 584
SacI GAGCTC 1 cut(s) 977
SatI GCNGC 6 cut(s) 633, 663, 883, 906, 913, 1022
Sau3AI GATC 4 cut(s) 42, 311, 494, 1042
Sau96I GGNCC 1 cut(s) 780
ScaI AGTACT 1 cut(s) 1158
SchI GAGTC 3 cut(s) 236, 397, 778
ScrFI CCNGG 3 cut(s) 234, 400, 680
SduI GDGCHC 3 cut(s) 647, 977, 1060
SfaNI GCATC 3 cut(s) 144, 619, 684
SfcI CTRYAG 1 cut(s) 936
SfoI GGCGCC 1 cut(s) 379
SfuI TTCGAA 1 cut(s) 1163
SinI GGWCC 1 cut(s) 780
SmiMI CAYNNNNRTG 1 cut(s) 584
SmlI CTYRAG 1 cut(s) 278
SmoI CTYRAG 1 cut(s) 278
SphI GCATGC 1 cut(s) 98
Sse9I AATT 7 cut(s) 124, 348, 589, 832, 992, 1119, 1138
SsiI CCGC 4 cut(s) 410, 561, 883, 913
SspDI GGCGCC 1 cut(s) 377
SspI AATATT 1 cut(s) 715
SspMI CTAG 4 cut(s) 543, 726, 869, 1046
SstI GAGCTC 1 cut(s) 977
StyD4I CCNGG 3 cut(s) 232, 398, 678
StyI CCWWGG 1 cut(s) 856
TaaI ACNGT 6 cut(s) 83, 337, 640, 651, 937, 988
TaiI ACGT 1 cut(s) 1130
TaqI TCGA 5 cut(s) 47, 225, 267, 1136, 1163
TasI AATT 7 cut(s) 124, 348, 589, 832, 992, 1119, 1138
TatI WGTACW 1 cut(s) 1156
TauI GCSGC 2 cut(s) 885, 915
TfiI GAWTC 6 cut(s) 49, 222, 269, 507, 721, 947
TscAI CASTG 8 cut(s) 188, 201, 321, 360, 484, 643, 779, 1137
TseFI GTSAC 2 cut(s) 205, 757
TseI GCWGC 4 cut(s) 632, 662, 905, 1021
Tsp45I GTSAC 2 cut(s) 205, 757
TspDTI ATGAA 6 cut(s) 16, 129, 602, 638, 826, 1053
TspGWI ACGGA 1 cut(s) 989
TspRI CASTG 8 cut(s) 188, 201, 321, 360, 484, 643, 779, 1137
VpaK11BI GGWCC 1 cut(s) 780
XapI RAATTY 3 cut(s) 832, 992, 1119
XbaI TCTAGA 1 cut(s) 1045
XceI RCATGY 2 cut(s) 98, 517
XspI CTAG 4 cut(s) 543, 726, 869, 1046
ZrmI AGTACT 1 cut(s) 1158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.