MD09G1191400.v1.1

Survival protein SurE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0002356
Physical Location & Seq
Reverse (-)
17002419 .. 17007065
4647 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1191400.v1.1.491

Sequence Viewer

Length: 1146 bp
ATGACTTCCACATCTGTGAAACCCAATTTGTTGCCTCCGGGCTTGGTCTCCAATCTGCAAGATGTATTGAGCAAAAGGGCTGGTGGGGAAGGAGAGAAAGCTGCTAAATCCACTGAGCCCCCTACTTCTGAAGCTGCTACCACTGCGGAGGAGGACCCCAATGACAGCTCCAAGCCTATTGTTTTGGTCACCAATGGCGATGGGATTGAGTCCCCTGGCCTCACTTTCCTCGTTGAAGCTCTGGTCCGCCAAGGCCTTTACAATGTCCATGTCTGCGCTCCTCAATTGGACAAATCAGTGTCAGGTCATTCTGTGACCCTCCAAGAAACGGTTGCTGTGAGTTCTGCTGATATAAATGGTGCCACAGCATATGAAGTTTCAGGGACTCCCGTGGATTGTGTTTCATTAGCGTTATCTGGGGCACTGTTTTCTTGGTCAAAGCCTTTGCTGGTAATTAGTGGAATCAACCGGGGATCAAGCTGTGGTCATCATATATTGTACTCTGGTGCTGTTGCTGGAGCTAGGGAAGCATTGATAAGCGGAGTACCATCTTTATCAATATCACTAAATTGGAGGAAGGGTGAAAGTCAAGAAAATGATTTCAAAGATGCTGTTTCTGTATGTTTACCTTTGATAAATGCAGCTATAAGGGATATTGACAAGGGAGTTTTCCCCAAAAGTTGCTTCCTGAATATAGAGATTCCATCGTCTCCTTTGTCAAATAAGGGTTTTAAATTAACCAAGCAAAGCAAGTTGAGATCTAGTGCTTGCTGGCAAGCTGTTTCAGCTAGTCGTTATCCTGCTGGACATTTTATGAACAGTCAACAAAGCCTTGGTATTCAGCTTGCACAGCTTGGTCGCGATGCTTCTGCTGCTGGTGCAGCTCGCCGTGTGACAAAACAGAGGATGAATGTGGAGATTGAATCAACTGGAGCTGCGGGAAAATCTGATTTTGAGCGGGTGAAAAAATACTTCCGATTAGAGTTTGTGGAGAAGGAGCAGGAAGATACGGATGAGGATCTGGATTTCAGAGCACTTGAAAGCGGATTTGTTTCGGTGACCCCTCTCGCCCTTTCACCAGATCTTGAATCAGAAACTCAAACAGCTGCCTCCAACTGGATCTCTTCTGCACTTCAAGAGCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 ko00760 ko01100 ko01110 map00230 map00240 map00760 map01100 map01110
Pfam Domains
Protein Families
SurE

Protein Analysis

382

Amino Acids

40.43

Weight (kDa)

5.24

Isoelectric Point (pI)

46.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SurE PF01975 61 - 253 2.5e-50 Survival protein SurE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 359
AccBSI CCGCTC 1 cut(s) 958
AccII CGCG 1 cut(s) 861
AciI CCGC 6 cut(s) 146, 247, 540, 938, 958, 1044
AclWI GGATC 3 cut(s) 481, 1026, 1127
AcuI CTGAAG 1 cut(s) 150
AfaI GTAC 2 cut(s) 500, 546
AfiI CCNNNNNNNGG 2 cut(s) 328, 1116
AgsI TTSAA 6 cut(s) 236, 604, 923, 1040, 1088, 1136
AjnI CCWGG 1 cut(s) 214
AjuI GAANNNNNNNTTGG 2 cut(s) 668, 700
AleI CACNNNNGTG 1 cut(s) 14
Alw21I GWGCWC 1 cut(s) 1036
Alw26I GTCTC 2 cut(s) 52, 714
AlwI GGATC 3 cut(s) 481, 1026, 1127
AoxI GGCC 2 cut(s) 217, 253
ApeKI GCWGC 7 cut(s) 101, 134, 641, 872, 881, 935, 1106
AspLEI GCGC 1 cut(s) 278
AspS9I GGNCC 2 cut(s) 154, 244
AsuC2I CCSGG 2 cut(s) 39, 470
AsuHPI GGTGA 5 cut(s) 181, 593, 973, 1068, 1069
AvaII GGWCC 2 cut(s) 154, 244
BaeGI GKGCMC 1 cut(s) 424
BanI GGYRCC 1 cut(s) 359
BanII GRGCYC 1 cut(s) 120
Bbv12I GWGCWC 1 cut(s) 1036
BbvI GCAGC 7 cut(s) 88, 121, 653, 859, 893, 922, 1093
BccI CCATC 3 cut(s) 194, 556, 712
BceAI ACGGC 1 cut(s) 873
BcgI CGANNNNNNTGC 2 cut(s) 851, 885
BciT130I CCWGG 1 cut(s) 216
BcnI CCSGG 2 cut(s) 39, 470
BcoDI GTCTC 2 cut(s) 52, 714
BfaI CTAG 3 cut(s) 522, 762, 789
BglII AGATCT 2 cut(s) 758, 1081
BisI GCNGC 7 cut(s) 102, 135, 642, 873, 882, 936, 1107
BlsI GCNGC 7 cut(s) 103, 136, 643, 874, 883, 937, 1108
Bme1390I CCNGG 3 cut(s) 39, 216, 470
Bme18I GGWCC 2 cut(s) 154, 244
BmgT120I GGNCC 2 cut(s) 154, 244
BmiI GGNNCC 2 cut(s) 156, 361
BmrFI CCNGG 3 cut(s) 39, 216, 470
BmsI GCATC 2 cut(s) 598, 853
BpmI CTGGAG 2 cut(s) 537, 951
BpuMI CCSGG 2 cut(s) 39, 470
BsaBI GATNNNNATC 1 cut(s) 1017
BsaI GGTCTC 1 cut(s) 52
BsaJI CCNNGG 5 cut(s) 214, 250, 390, 469, 832
BsaXI ACNNNNNCTCC 2 cut(s) 565, 595
Bsc4I CCNNNNNNNGG 2 cut(s) 328, 1116
Bse1I ACTGG 2 cut(s) 934, 1121
Bse8I GATNNNNATC 1 cut(s) 1017
BseBI CCWGG 1 cut(s) 216
BseDI CCNNGG 5 cut(s) 214, 250, 390, 469, 832
BseGI GGATG 2 cut(s) 912, 1018
BseJI GATNNNNATC 1 cut(s) 1017
BseLI CCNNNNNNNGG 2 cut(s) 328, 1116
BseMII CTCAG 1 cut(s) 105
BseNI ACTGG 2 cut(s) 934, 1121
BseRI GAGGAG 2 cut(s) 164, 270
BseSI GKGCMC 1 cut(s) 424
BseXI GCAGC 7 cut(s) 88, 121, 653, 859, 893, 922, 1093
BsgI GTGCAG 2 cut(s) 900, 1113
Bsh1236I CGCG 1 cut(s) 861
BshFI GGCC 2 cut(s) 219, 255
BshNI GGYRCC 1 cut(s) 359
BsiHKAI GWGCWC 1 cut(s) 1036
BsiSI CCGG 2 cut(s) 38, 469
BslFI GGGAC 2 cut(s) 196, 397
BslI CCNNNNNNNGG 2 cut(s) 328, 1116
BsmAI GTCTC 2 cut(s) 52, 714
BsmBI CGTCTC 1 cut(s) 714
BsmFI GGGAC 2 cut(s) 196, 397
BsnI GGCC 2 cut(s) 219, 255
Bso31I GGTCTC 1 cut(s) 52
Bsp1286I GDGCHC 3 cut(s) 120, 424, 1036
Bsp143I GATC 5 cut(s) 473, 758, 1018, 1081, 1119
Bsp68I TCGCGA 1 cut(s) 861
BspACI CCGC 6 cut(s) 146, 247, 540, 938, 958, 1044
BspANI GGCC 2 cut(s) 219, 255
BspCNI CTCAG 1 cut(s) 106
BspFNI CGCG 1 cut(s) 861
BspLI GGNNCC 2 cut(s) 156, 361
BspPI GGATC 3 cut(s) 481, 1026, 1127
BspT107I GGYRCC 1 cut(s) 359
BspTNI GGTCTC 1 cut(s) 52
BsrBI CCGCTC 1 cut(s) 958
BsrI ACTGG 2 cut(s) 934, 1121
BssECI CCNNGG 5 cut(s) 214, 250, 390, 469, 832
BssMI GATC 5 cut(s) 473, 758, 1018, 1081, 1119
BssT1I CCWWGG 2 cut(s) 250, 832
Bst2UI CCWGG 1 cut(s) 216
Bst4CI ACNGT 3 cut(s) 331, 426, 821
Bst6I CTCTTC 1 cut(s) 1129
BstC8I GCNNGC 5 cut(s) 769, 773, 777, 846, 886
BstDEI CTNAG 1 cut(s) 114
BstDSI CCRYGG 1 cut(s) 390
BstEII GGTNACC 2 cut(s) 187, 1057
BstF5I GGATG 2 cut(s) 912, 1018
BstFNI CGCG 1 cut(s) 861
BstHHI GCGC 1 cut(s) 278
BstKTI GATC 5 cut(s) 476, 761, 1021, 1084, 1122
BstMAI GTCTC 2 cut(s) 52, 714
BstMBI GATC 5 cut(s) 473, 758, 1018, 1081, 1119
BstMWI GCNNNNNNNGC 7 cut(s) 143, 527, 785, 850, 872, 878, 881
BstNI CCWGG 1 cut(s) 216
BstPI GGTNACC 2 cut(s) 187, 1057
BstSCI CCNGG 3 cut(s) 37, 214, 468
BstSLI GKGCMC 1 cut(s) 424
BstUI CGCG 1 cut(s) 861
BstV1I GCAGC 7 cut(s) 88, 121, 653, 859, 893, 922, 1093
BstX2I RGATCY 4 cut(s) 758, 1018, 1081, 1119
BstYI RGATCY 4 cut(s) 758, 1018, 1081, 1119
BsuRI GGCC 2 cut(s) 219, 255
BtgI CCRYGG 1 cut(s) 390
BtgZI GCGATG 2 cut(s) 213, 876
BtsCI GGATG 2 cut(s) 912, 1018
BtsI GCAGTG 1 cut(s) 141
BtsIMutI CAGTG 4 cut(s) 111, 141, 303, 422
BtuMI TCGCGA 1 cut(s) 861
Cac8I GCNNGC 5 cut(s) 769, 773, 777, 846, 886
CfoI GCGC 1 cut(s) 278
Cfr13I GGNCC 2 cut(s) 154, 244
Csp6I GTAC 2 cut(s) 499, 545
CviAII CATG 1 cut(s) 269
CviQI GTAC 2 cut(s) 499, 545
DdeI CTNAG 1 cut(s) 114
DpnI GATC 5 cut(s) 475, 760, 1020, 1083, 1121
DpnII GATC 5 cut(s) 473, 758, 1018, 1081, 1119
DraI TTTAAA 1 cut(s) 733
Eam1104I CTCTTC 1 cut(s) 1129
EarI CTCTTC 1 cut(s) 1129
EciI GGCGGA 1 cut(s) 236
Eco130I CCWWGG 2 cut(s) 250, 832
Eco147I AGGCCT 1 cut(s) 255
Eco24I GRGCYC 1 cut(s) 120
Eco31I GGTCTC 1 cut(s) 52
Eco47I GGWCC 2 cut(s) 154, 244
Eco57I CTGAAG 1 cut(s) 150
Eco91I GGTNACC 2 cut(s) 187, 1057
EcoO109I RGGNCCY 1 cut(s) 154
EcoO65I GGTNACC 2 cut(s) 187, 1057
EcoRII CCWGG 1 cut(s) 214
EcoT14I CCWWGG 2 cut(s) 250, 832
EcoT38I GRGCYC 1 cut(s) 120
ErhI CCWWGG 2 cut(s) 250, 832
Esp3I CGTCTC 1 cut(s) 714
FaeI CATG 1 cut(s) 272
FaqI GGGAC 2 cut(s) 196, 397
FatI CATG 1 cut(s) 268
FauI CCCGC 2 cut(s) 931, 951
FauNDI CATATG 1 cut(s) 370
Fnu4HI GCNGC 7 cut(s) 102, 135, 642, 873, 882, 936, 1107
FokI GGATG 2 cut(s) 919, 1025
FriOI GRGCYC 1 cut(s) 120
Fsp4HI GCNGC 7 cut(s) 102, 135, 642, 873, 882, 936, 1107
FspBI CTAG 3 cut(s) 522, 762, 789
GlaI GCGC 1 cut(s) 277
GluI GCNGC 7 cut(s) 102, 135, 642, 873, 882, 936, 1107
GsuI CTGGAG 2 cut(s) 537, 951
HaeIII GGCC 2 cut(s) 219, 255
HapII CCGG 2 cut(s) 38, 469
HhaI GCGC 1 cut(s) 278
Hin1II CATG 1 cut(s) 272
Hin6I GCGC 1 cut(s) 276
HinP1I GCGC 1 cut(s) 276
HincII GTYRAC 1 cut(s) 824
HindII GTYRAC 1 cut(s) 824
HinfI GANTC 6 cut(s) 209, 385, 462, 700, 923, 1088
HpaII CCGG 2 cut(s) 38, 469
HphI GGTGA 5 cut(s) 181, 593, 973, 1068, 1069
Hpy166II GTNNAC 2 cut(s) 626, 824
Hpy188I TCNGA 5 cut(s) 130, 949, 977, 1031, 1093
Hpy188III TCNNGA 6 cut(s) 590, 688, 860, 1022, 1085, 1136
Hpy8I GTNNAC 2 cut(s) 626, 824
HpyAV CCTTC 3 cut(s) 83, 571, 988
HpyCH4III ACNGT 3 cut(s) 331, 426, 821
HpyCH4V TGCA 5 cut(s) 58, 641, 848, 881, 1130
HpyF10VI GCNNNNNNNGC 7 cut(s) 143, 527, 785, 850, 872, 878, 881
HpyF3I CTNAG 1 cut(s) 114
Hsp92II CATG 1 cut(s) 272
HspAI GCGC 1 cut(s) 276
Kzo9I GATC 5 cut(s) 473, 758, 1018, 1081, 1119
LmnI GCTCC 5 cut(s) 173, 283, 518, 932, 997
Lsp1109I GCAGC 7 cut(s) 88, 121, 653, 859, 893, 922, 1093
LweI GCATC 2 cut(s) 598, 853
MaeI CTAG 3 cut(s) 522, 762, 789
MaeIII GTNAC 4 cut(s) 187, 313, 892, 1057
MalI GATC 5 cut(s) 475, 760, 1020, 1083, 1121
MbiI CCGCTC 1 cut(s) 958
MboI GATC 5 cut(s) 473, 758, 1018, 1081, 1119
MboII GAAGA 2 cut(s) 1016, 1116
MfeI CAATTG 1 cut(s) 284
MflI RGATCY 4 cut(s) 758, 1018, 1081, 1119
MhlI GDGCHC 3 cut(s) 120, 424, 1036
MluCI AATT 5 cut(s) 25, 284, 453, 568, 734
MlyI GAGTC 2 cut(s) 218, 379
MmeI TCCRAC 1 cut(s) 1137
MseI TTAA 2 cut(s) 732, 737
MslI CAYNNNNRTG 1 cut(s) 14
MspA1I CMGCKG 1 cut(s) 1106
MspI CCGG 2 cut(s) 38, 469
MspR9I CCNGG 3 cut(s) 39, 216, 470
MunI CAATTG 1 cut(s) 284
MvaI CCWGG 1 cut(s) 216
MvnI CGCG 1 cut(s) 861
MwoI GCNNNNNNNGC 7 cut(s) 143, 527, 785, 850, 872, 878, 881
NciI CCSGG 2 cut(s) 39, 470
NdeI CATATG 1 cut(s) 370
NdeII GATC 5 cut(s) 473, 758, 1018, 1081, 1119
NlaIII CATG 1 cut(s) 272
NlaIV GGNNCC 2 cut(s) 156, 361
NmuCI GTSAC 4 cut(s) 187, 313, 892, 1057
NruI TCGCGA 1 cut(s) 861
OliI CACNNNNGTG 1 cut(s) 14
PceI AGGCCT 1 cut(s) 255
PfeI GAWTC 4 cut(s) 462, 700, 923, 1088
PkrI GCNGC 7 cut(s) 103, 136, 643, 874, 883, 937, 1108
PleI GAGTC 2 cut(s) 217, 379
PpsI GAGTC 2 cut(s) 217, 379
PpuMI RGGWCCY 1 cut(s) 154
Psp5II RGGWCCY 1 cut(s) 154
Psp6I CCWGG 1 cut(s) 214
PspEI GGTNACC 2 cut(s) 187, 1057
PspGI CCWGG 1 cut(s) 214
PspN4I GGNNCC 2 cut(s) 156, 361
PspPI GGNCC 2 cut(s) 154, 244
PspPPI RGGWCCY 1 cut(s) 154
PsuI RGATCY 4 cut(s) 758, 1018, 1081, 1119
PvuII CAGCTG 1 cut(s) 1106
RruI TCGCGA 1 cut(s) 861
RsaI GTAC 2 cut(s) 500, 546
RsaNI GTAC 2 cut(s) 499, 545
RseI CAYNNNNRTG 1 cut(s) 14
SaqAI TTAA 2 cut(s) 732, 737
SatI GCNGC 7 cut(s) 102, 135, 642, 873, 882, 936, 1107
Sau3AI GATC 5 cut(s) 473, 758, 1018, 1081, 1119
Sau96I GGNCC 2 cut(s) 154, 244
SchI GAGTC 2 cut(s) 218, 379
ScrFI CCNGG 3 cut(s) 39, 216, 470
SduI GDGCHC 3 cut(s) 120, 424, 1036
SfaNI GCATC 2 cut(s) 598, 853
SinI GGWCC 2 cut(s) 154, 244
SmiMI CAYNNNNRTG 1 cut(s) 14
Sse9I AATT 5 cut(s) 25, 284, 453, 568, 734
SseBI AGGCCT 1 cut(s) 255
SsiI CCGC 6 cut(s) 146, 247, 540, 938, 958, 1044
SspMI CTAG 3 cut(s) 522, 762, 789
StuI AGGCCT 1 cut(s) 255
StyD4I CCNGG 3 cut(s) 37, 214, 468
StyI CCWWGG 2 cut(s) 250, 832
TaaI ACNGT 3 cut(s) 331, 426, 821
TasI AATT 5 cut(s) 25, 284, 453, 568, 734
TatI WGTACW 1 cut(s) 498
TfiI GAWTC 4 cut(s) 462, 700, 923, 1088
Tru1I TTAA 2 cut(s) 732, 737
Tru9I TTAA 2 cut(s) 732, 737
TscAI CASTG 4 cut(s) 118, 148, 303, 429
TseFI GTSAC 4 cut(s) 187, 313, 892, 1057
TseI GCWGC 7 cut(s) 101, 134, 641, 872, 881, 935, 1106
Tsp45I GTSAC 4 cut(s) 187, 313, 892, 1057
TspDTI ATGAA 4 cut(s) 387, 393, 830, 923
TspGWI ACGGA 1 cut(s) 1025
TspRI CASTG 4 cut(s) 118, 148, 303, 429
VpaK11BI GGWCC 2 cut(s) 154, 244
XspI CTAG 3 cut(s) 522, 762, 789
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.