RLG00000020054

Survival protein SurE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0002356
Physical Location & Seq
Forward (+)
60613738 .. 60617267
3530 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020054

Sequence Viewer

Length: 1092 bp
ATGTTACCTGCGGGCCTGGTCTCCAATCTCCAAGACGTGTTGAGCAAAAGAGGTGGAGGTGACCAACCCACTGAGCCTTCAACTTCTGAAGCTGCAGAGGACCCTGTTGATAGTTCCAAGCCCATCGTTTTGGTCACCAATGGTGATGGGATTGACTCCCCTGGTCTTACTTACCTTGTTGAAGCTCTCGTCCGCCAAGGCCTTTACAATGTCCATGTCTGCGCTCCTCAATCGGACAAATCAGTATCCGGTCATTCCGTGACTCTCCGAGAAACGGTTTCTGTTAGTTCTGCTGAGATAAATGGTGCCACAGCTTATGAAGTTGCAGGTACTCCCGTAGATTGTGTCTCATTAGCGTTATCTGGCTCACTGTTTTCTTGGTCAAAGCCTCTGCTGGTAATCAGTGGAATCAACCGGGGATCAAACTGTGGCCATCACATGTTGTACTCGGGTGTTGTTGCTGGAGCTAGGGAGGCACTAATAAGTGGAGTGCCCTCTTTATCAATATCACTAAATTGGAGGAAGGATGAAAGTCAAGAAAATGATTTCAAAGATGCAGTTGCTGTTTGTTTACCTCTAATAAATGCAGCTATCAGGGATATTGAGAAGGGGGAATTCCCCAAGAGTTGCTTTCTGAATATAGAGATTCCTTCATCTCCTTTATCAAACAAGGGGTTTAAAATAACCAAGCAAAGCACGTGGAGATCTACTCCCAGCTGGCAAGCTGTTTCAGCTAATCGTTATCCTCCTGGACATTTCATGAACAGTCAACAAAGCCTTGGGATTCAGCTTGCACAACTTGGCCGAGATGCATCTGCTGCCGGTGCAGCTCGTCGTGTGACGACACGGAAGAAGAATGTGGAGATTGAATCAACTGGAGCTGCAGGAAAATCTGATTTTGAACGGGTGAAAAAGTACTTCCGACTAGAGTTTGTGGATAAAGAGCAGGAAAATACGGATGAGGATCTGGATTTCAGAGCACTCGAAAGCGGATTTGTATCAGTAACTCCTCTTTCCCTTTCACCACATCTCGAGTCCGATACTCAAACAGCTGCCACCAATTGGATCTCATCTGCACTTCAAGAGCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 ko00760 ko01100 ko01110 map00230 map00240 map00760 map01100 map01110
Pfam Domains
Protein Families
SurE

Protein Analysis

364

Amino Acids

38.88

Weight (kDa)

5.28

Isoelectric Point (pI)

41.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SurE PF01975 43 - 235 2.9e-52 Survival protein SurE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 16, 317
AccB1I GGYRCC 1 cut(s) 305
AccB7I CCANNNNNTGG 1 cut(s) 1062
AciI CCGC 3 cut(s) 11, 193, 990
AclWI GGATC 3 cut(s) 427, 972, 1073
AcoI YGGCCR 2 cut(s) 430, 802
AcsI RAATTY 1 cut(s) 614
AcuI CTGAAG 1 cut(s) 108
AcvI CACGTG 1 cut(s) 699
AfaI GTAC 3 cut(s) 331, 446, 917
AfiI CCNNNNNNNGG 2 cut(s) 274, 1062
AflIII ACRYGT 2 cut(s) 36, 438
AgsI TTSAA 6 cut(s) 81, 182, 550, 869, 902, 1082
AjiI CACGTC 1 cut(s) 37
AjnI CCWGG 3 cut(s) 15, 160, 748
Alw21I GWGCWC 1 cut(s) 982
Alw26I GTCTC 2 cut(s) 25, 352
AlwI GGATC 3 cut(s) 427, 972, 1073
AlwNI CAGNNNCTG 1 cut(s) 563
Ama87I CYCGRG 2 cut(s) 448, 1031
AoxI GGCC 4 cut(s) 13, 199, 430, 802
ApeKI GCWGC 6 cut(s) 92, 587, 818, 827, 881, 1052
ApoI RAATTY 1 cut(s) 614
AspLEI GCGC 1 cut(s) 224
AspS9I GGNCC 2 cut(s) 13, 100
AsuC2I CCSGG 1 cut(s) 416
AsuHPI GGTGA 5 cut(s) 71, 127, 155, 919, 1014
AvaI CYCGRG 2 cut(s) 448, 1031
AvaII GGWCC 1 cut(s) 100
BaeGI GKGCMC 1 cut(s) 495
BaeI ACNNNNGTAYC 2 cut(s) 321, 354
BalI TGGCCA 1 cut(s) 432
BanI GGYRCC 1 cut(s) 305
BbrPI CACGTG 1 cut(s) 699
Bbv12I GWGCWC 1 cut(s) 982
BbvI GCAGC 6 cut(s) 79, 599, 805, 839, 868, 1039
BccI CCATC 3 cut(s) 131, 140, 441
BciT130I CCWGG 3 cut(s) 17, 162, 750
BciVI GTATCC 1 cut(s) 256
BcnI CCSGG 1 cut(s) 416
BcoDI GTCTC 2 cut(s) 25, 352
BfaI CTAG 2 cut(s) 468, 926
BfmI CTRYAG 2 cut(s) 93, 882
BfuAI ACCTGC 2 cut(s) 16, 317
BfuI GTATCC 1 cut(s) 256
BglII AGATCT 1 cut(s) 704
BisI GCNGC 6 cut(s) 93, 588, 819, 828, 882, 1053
BlsI GCNGC 6 cut(s) 94, 589, 820, 829, 883, 1054
BmcAI AGTACT 1 cut(s) 917
Bme1390I CCNGG 4 cut(s) 17, 162, 416, 750
Bme18I GGWCC 1 cut(s) 100
BmeT110I CYCGRG 2 cut(s) 448, 1031
BmgBI CACGTC 1 cut(s) 37
BmgT120I GGNCC 2 cut(s) 13, 100
BmiI GGNNCC 2 cut(s) 102, 307
BmrFI CCNGG 4 cut(s) 17, 162, 416, 750
BmsI GCATC 3 cut(s) 544, 799, 821
BplI GAGNNNNNCTC 2 cut(s) 694, 726
BpmI CTGGAG 2 cut(s) 483, 897
BpuMI CCSGG 1 cut(s) 416
BsaAI YACGTR 1 cut(s) 699
BsaBI GATNNNNATC 2 cut(s) 963, 997
BsaI GGTCTC 1 cut(s) 25
BsaJI CCNNGG 4 cut(s) 160, 196, 415, 778
BsaWI WCCGGW 1 cut(s) 248
Bsc4I CCNNNNNNNGG 2 cut(s) 274, 1062
Bse118I RCCGGY 1 cut(s) 821
Bse1I ACTGG 1 cut(s) 880
Bse8I GATNNNNATC 2 cut(s) 963, 997
BseBI CCWGG 3 cut(s) 17, 162, 750
BseDI CCNNGG 4 cut(s) 160, 196, 415, 778
BseGI GGATG 2 cut(s) 532, 964
BseJI GATNNNNATC 2 cut(s) 963, 997
BseLI CCNNNNNNNGG 2 cut(s) 274, 1062
BseMII CTCAG 2 cut(s) 63, 285
BseNI ACTGG 1 cut(s) 880
BseRI GAGGAG 2 cut(s) 216, 999
BseSI GKGCMC 1 cut(s) 495
BseXI GCAGC 6 cut(s) 79, 599, 805, 839, 868, 1039
BseYI CCCAGC 1 cut(s) 713
BsgI GTGCAG 2 cut(s) 846, 1059
BshFI GGCC 4 cut(s) 15, 201, 432, 804
BshNI GGYRCC 1 cut(s) 305
BsiHKAI GWGCWC 1 cut(s) 982
BsiHKCI CYCGRG 2 cut(s) 448, 1031
BsiSI CCGG 3 cut(s) 249, 415, 822
BslI CCNNNNNNNGG 2 cut(s) 274, 1062
BsmAI GTCTC 2 cut(s) 25, 352
BsnI GGCC 4 cut(s) 15, 201, 432, 804
Bso31I GGTCTC 1 cut(s) 25
BsoBI CYCGRG 2 cut(s) 448, 1031
Bsp1286I GDGCHC 2 cut(s) 495, 982
Bsp143I GATC 4 cut(s) 419, 704, 964, 1065
BspACI CCGC 3 cut(s) 11, 193, 990
BspANI GGCC 4 cut(s) 15, 201, 432, 804
BspCNI CTCAG 2 cut(s) 64, 286
BspHI TCATGA 1 cut(s) 759
BspLI GGNNCC 2 cut(s) 102, 307
BspMAI CTGCAG 2 cut(s) 97, 886
BspMI ACCTGC 2 cut(s) 16, 317
BspPI GGATC 3 cut(s) 427, 972, 1073
BspT107I GGYRCC 1 cut(s) 305
BspTNI GGTCTC 1 cut(s) 25
BsrFI RCCGGY 1 cut(s) 821
BsrI ACTGG 1 cut(s) 880
BssAI RCCGGY 1 cut(s) 821
BssECI CCNNGG 4 cut(s) 160, 196, 415, 778
BssMI GATC 4 cut(s) 419, 704, 964, 1065
BssT1I CCWWGG 2 cut(s) 196, 778
Bst2UI CCWGG 3 cut(s) 17, 162, 750
Bst4CI ACNGT 4 cut(s) 277, 372, 428, 767
BstAPI GCANNNNNTGC 1 cut(s) 818
BstBAI YACGTR 1 cut(s) 699
BstC8I GCNNGC 4 cut(s) 13, 719, 723, 792
BstDEI CTNAG 2 cut(s) 72, 294
BstEII GGTNACC 2 cut(s) 59, 133
BstF5I GGATG 2 cut(s) 532, 964
BstHHI GCGC 1 cut(s) 224
BstKTI GATC 4 cut(s) 422, 707, 967, 1068
BstMAI GTCTC 2 cut(s) 25, 352
BstMBI GATC 4 cut(s) 419, 704, 964, 1065
BstMWI GCNNNNNNNGC 5 cut(s) 473, 731, 818, 824, 827
BstNI CCWGG 3 cut(s) 17, 162, 750
BstNSI RCATGY 1 cut(s) 442
BstPI GGTNACC 2 cut(s) 59, 133
BstSCI CCNGG 4 cut(s) 15, 160, 414, 748
BstSFI CTRYAG 2 cut(s) 93, 882
BstSLI GKGCMC 1 cut(s) 495
BstV1I GCAGC 6 cut(s) 79, 599, 805, 839, 868, 1039
BstX2I RGATCY 3 cut(s) 704, 964, 1065
BstXI CCANNNNNNTGG 1 cut(s) 130
BstYI RGATCY 3 cut(s) 704, 964, 1065
BsuI GTATCC 1 cut(s) 256
BsuRI GGCC 4 cut(s) 15, 201, 432, 804
BtrI CACGTC 1 cut(s) 37
BtsCI GGATG 2 cut(s) 532, 964
BtsIMutI CAGTG 3 cut(s) 69, 368, 409
BveI ACCTGC 2 cut(s) 16, 317
Cac8I GCNNGC 4 cut(s) 13, 719, 723, 792
CaiI CAGNNNCTG 1 cut(s) 563
CciI TCATGA 1 cut(s) 759
CfoI GCGC 1 cut(s) 224
Cfr10I RCCGGY 1 cut(s) 821
Cfr13I GGNCC 2 cut(s) 13, 100
Csp6I GTAC 3 cut(s) 330, 445, 916
CspCI CAANNNNNGTGG 4 cut(s) 34, 69, 680, 715
CviAII CATG 3 cut(s) 215, 439, 760
CviQI GTAC 3 cut(s) 330, 445, 916
DdeI CTNAG 2 cut(s) 72, 294
DpnI GATC 4 cut(s) 421, 706, 966, 1067
DpnII GATC 4 cut(s) 419, 704, 964, 1065
DraI TTTAAA 1 cut(s) 679
EaeI YGGCCR 2 cut(s) 430, 802
EciI GGCGGA 1 cut(s) 182
Eco130I CCWWGG 2 cut(s) 196, 778
Eco147I AGGCCT 1 cut(s) 201
Eco31I GGTCTC 1 cut(s) 25
Eco47I GGWCC 1 cut(s) 100
Eco57I CTGAAG 1 cut(s) 108
Eco72I CACGTG 1 cut(s) 699
Eco88I CYCGRG 2 cut(s) 448, 1031
Eco91I GGTNACC 2 cut(s) 59, 133
EcoO109I RGGNCCY 1 cut(s) 100
EcoO65I GGTNACC 2 cut(s) 59, 133
EcoRI GAATTC 1 cut(s) 614
EcoRII CCWGG 3 cut(s) 15, 160, 748
EcoT14I CCWWGG 2 cut(s) 196, 778
EcoT22I ATGCAT 1 cut(s) 814
ErhI CCWWGG 2 cut(s) 196, 778
FaeI CATG 3 cut(s) 218, 442, 763
FaiI YATR 5 cut(s) 216, 318, 440, 641, 761
FalI AAGNNNNNCTT 2 cut(s) 614, 646
FatI CATG 3 cut(s) 214, 438, 759
FauI CCCGC 1 cut(s) 4
Fnu4HI GCNGC 6 cut(s) 93, 588, 819, 828, 882, 1053
FokI GGATG 2 cut(s) 539, 971
Fsp4HI GCNGC 6 cut(s) 93, 588, 819, 828, 882, 1053
FspBI CTAG 2 cut(s) 468, 926
GlaI GCGC 1 cut(s) 223
GluI GCNGC 6 cut(s) 93, 588, 819, 828, 882, 1053
GsaI CCCAGC 1 cut(s) 717
GsuI CTGGAG 2 cut(s) 483, 897
HaeIII GGCC 4 cut(s) 15, 201, 432, 804
HapII CCGG 3 cut(s) 249, 415, 822
HhaI GCGC 1 cut(s) 224
Hin1II CATG 3 cut(s) 218, 442, 763
Hin6I GCGC 1 cut(s) 222
HinP1I GCGC 1 cut(s) 222
HincII GTYRAC 1 cut(s) 770
HindII GTYRAC 1 cut(s) 770
HinfI GANTC 7 cut(s) 155, 262, 408, 646, 784, 869, 1034
HpaII CCGG 3 cut(s) 249, 415, 822
HphI GGTGA 5 cut(s) 71, 127, 155, 919, 1014
Hpy166II GTNNAC 2 cut(s) 572, 770
Hpy188I TCNGA 8 cut(s) 88, 235, 269, 636, 895, 923, 977, 1039
Hpy188III TCNNGA 5 cut(s) 536, 760, 968, 1031, 1082
Hpy8I GTNNAC 2 cut(s) 572, 770
Hpy99I CGWCG 1 cut(s) 837
HpyAV CCTTC 4 cut(s) 87, 517, 601, 660
HpyCH4III ACNGT 4 cut(s) 277, 372, 428, 767
HpyCH4IV ACGT 2 cut(s) 36, 698
HpyCH4V TGCA 9 cut(s) 95, 326, 557, 587, 794, 812, 827, 884, 1076
HpyF10VI GCNNNNNNNGC 5 cut(s) 473, 731, 818, 824, 827
HpyF3I CTNAG 2 cut(s) 72, 294
HpySE526I ACGT 2 cut(s) 36, 698
Hsp92II CATG 3 cut(s) 218, 442, 763
HspAI GCGC 1 cut(s) 222
Kzo9I GATC 4 cut(s) 419, 704, 964, 1065
LmnI GCTCC 3 cut(s) 229, 464, 878
Lsp1109I GCAGC 6 cut(s) 79, 599, 805, 839, 868, 1039
LweI GCATC 3 cut(s) 544, 799, 821
MaeI CTAG 2 cut(s) 468, 926
MaeII ACGT 2 cut(s) 36, 698
MaeIII GTNAC 6 cut(s) 3, 59, 133, 259, 838, 1003
MalI GATC 4 cut(s) 421, 706, 966, 1067
MboI GATC 4 cut(s) 419, 704, 964, 1065
MboII GAAGA 2 cut(s) 862, 865
MfeI CAATTG 1 cut(s) 1060
MflI RGATCY 3 cut(s) 704, 964, 1065
MhlI GDGCHC 2 cut(s) 495, 982
MlsI TGGCCA 1 cut(s) 432
MluCI AATT 3 cut(s) 514, 614, 1060
MluNI TGGCCA 1 cut(s) 432
MlyI GAGTC 3 cut(s) 149, 256, 1043
MmeI TCCRAC 1 cut(s) 946
Mox20I TGGCCA 1 cut(s) 432
Mph1103I ATGCAT 1 cut(s) 814
MscI TGGCCA 1 cut(s) 432
MseI TTAA 1 cut(s) 678
Msp20I TGGCCA 1 cut(s) 432
MspA1I CMGCKG 2 cut(s) 717, 1052
MspI CCGG 3 cut(s) 249, 415, 822
MspR9I CCNGG 4 cut(s) 17, 162, 416, 750
MunI CAATTG 1 cut(s) 1060
MvaI CCWGG 3 cut(s) 17, 162, 750
MwoI GCNNNNNNNGC 5 cut(s) 473, 731, 818, 824, 827
NciI CCSGG 1 cut(s) 416
NdeII GATC 4 cut(s) 419, 704, 964, 1065
NlaIII CATG 3 cut(s) 218, 442, 763
NlaIV GGNNCC 2 cut(s) 102, 307
NmeAIII GCCGAG 1 cut(s) 830
NmuCI GTSAC 4 cut(s) 59, 133, 259, 838
NsiI ATGCAT 1 cut(s) 814
NspI RCATGY 1 cut(s) 442
PaeR7I CTCGAG 1 cut(s) 1031
PagI TCATGA 1 cut(s) 759
PceI AGGCCT 1 cut(s) 201
PciI ACATGT 1 cut(s) 438
PfeI GAWTC 4 cut(s) 408, 646, 784, 869
PflMI CCANNNNNTGG 1 cut(s) 1062
PfoI TCCNGGA 1 cut(s) 748
PkrI GCNGC 6 cut(s) 94, 589, 820, 829, 883, 1054
PleI GAGTC 3 cut(s) 149, 256, 1042
PmaCI CACGTG 1 cut(s) 699
PmlI CACGTG 1 cut(s) 699
PpsI GAGTC 3 cut(s) 149, 256, 1042
Ppu21I YACGTR 1 cut(s) 699
PpuMI RGGWCCY 1 cut(s) 100
PscI ACATGT 1 cut(s) 438
Psp5II RGGWCCY 1 cut(s) 100
Psp6I CCWGG 3 cut(s) 15, 160, 748
PspCI CACGTG 1 cut(s) 699
PspEI GGTNACC 2 cut(s) 59, 133
PspFI CCCAGC 1 cut(s) 713
PspGI CCWGG 3 cut(s) 15, 160, 748
PspN4I GGNNCC 2 cut(s) 102, 307
PspPI GGNCC 2 cut(s) 13, 100
PspPPI RGGWCCY 1 cut(s) 100
PstI CTGCAG 2 cut(s) 97, 886
PstNI CAGNNNCTG 1 cut(s) 563
PsuI RGATCY 3 cut(s) 704, 964, 1065
PvuII CAGCTG 2 cut(s) 717, 1052
RsaI GTAC 3 cut(s) 331, 446, 917
RsaNI GTAC 3 cut(s) 330, 445, 916
SaqAI TTAA 1 cut(s) 678
SatI GCNGC 6 cut(s) 93, 588, 819, 828, 882, 1053
Sau3AI GATC 4 cut(s) 419, 704, 964, 1065
Sau96I GGNCC 2 cut(s) 13, 100
ScaI AGTACT 1 cut(s) 917
SchI GAGTC 3 cut(s) 149, 256, 1043
ScrFI CCNGG 4 cut(s) 17, 162, 416, 750
SduI GDGCHC 2 cut(s) 495, 982
SfaNI GCATC 3 cut(s) 544, 799, 821
SfcI CTRYAG 2 cut(s) 93, 882
Sfr274I CTCGAG 1 cut(s) 1031
SinI GGWCC 1 cut(s) 100
SlaI CTCGAG 1 cut(s) 1031
SmlI CTYRAG 1 cut(s) 1031
SmoI CTYRAG 1 cut(s) 1031
Sse9I AATT 3 cut(s) 514, 614, 1060
SseBI AGGCCT 1 cut(s) 201
SsiI CCGC 3 cut(s) 11, 193, 990
SspMI CTAG 2 cut(s) 468, 926
StuI AGGCCT 1 cut(s) 201
StyD4I CCNGG 4 cut(s) 15, 160, 414, 748
StyI CCWWGG 2 cut(s) 196, 778
TaaI ACNGT 4 cut(s) 277, 372, 428, 767
TaiI ACGT 2 cut(s) 39, 701
TaqI TCGA 2 cut(s) 984, 1032
TasI AATT 3 cut(s) 514, 614, 1060
TatI WGTACW 2 cut(s) 444, 915
TfiI GAWTC 4 cut(s) 408, 646, 784, 869
Tru1I TTAA 1 cut(s) 678
Tru9I TTAA 1 cut(s) 678
TscAI CASTG 3 cut(s) 76, 375, 409
TseFI GTSAC 4 cut(s) 59, 133, 259, 838
TseI GCWGC 6 cut(s) 92, 587, 818, 827, 881, 1052
Tsp45I GTSAC 4 cut(s) 59, 133, 259, 838
TspDTI ATGAA 5 cut(s) 333, 543, 642, 748, 776
TspGWI ACGGA 3 cut(s) 247, 862, 971
TspRI CASTG 3 cut(s) 76, 375, 409
Van91I CCANNNNNTGG 1 cut(s) 1062
VpaK11BI GGWCC 1 cut(s) 100
XapI RAATTY 1 cut(s) 614
XceI RCATGY 1 cut(s) 442
XhoI CTCGAG 1 cut(s) 1031
XspI CTAG 2 cut(s) 468, 926
ZrmI AGTACT 1 cut(s) 917
Zsp2I ATGCAT 1 cut(s) 814
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.