Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002356

Physical Location & Seq

Genomic Coordinates Reverse (-)

70638389 .. 70641274

Gene Structure 2886 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0520900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

ATGGAAGGGACAAGTACATCACCAAAACAGGGTGTTCTGGAGTGTACTCTATTGCCTCCCAATGTACATTTGAAGGGAATAAAACCGAAACAAGAACTCTATGGACTGACATCTTCCCTTCCGATGCTGGAGATGCAAATGGCTATGATTTTCATCACAACCCAAGTCCTCCATTTACTTTTGAAGAGGTTTCATATCTCCAAGTTCAGCAGCCATCTTTTTACAGGCATACTCTTCGGCGTGCTTTACCACTATTGGGGATTTGGTGAAAAAGCATTTAATGTGAAAAGTCAAGGAGTTATTAGTCTTTTGGGTGAGCTTGGGACAAGGGAGCAGCTCGGGTATGGAGTTCAGTGTGGTCGGGATTTAAAATGGGGTGTTTTTGGCATTCTTTTCTCTGTTCAGTCATCTGAGTACAACCCAATCCACCTACAAGGAAGACTAGACAACTTCATAAATGGTCTGGAAGATTTGTTGGAAGGACTGGATGATGATTCCTTTGAGAATTATAAAGCTGGACTAATGGAAAATCTTTTGAAGAAAGATACACCCCTTACGTGTGAAACCAATCGATTGTGGAATGAGATTTATATTAAAAGGTATATGTTTGACTACTCAAAAAAGGCAGCAGAAGAACTCAGAAGCATTCAGAAGGAGGATGTTATCAACTTTTACAAGAGAGACAACAATCACCTTGAGCTTGTGACCGCTACGCATAGCATAACTGCGTTTCCGGTTGTTGTTCTCCTTCTCGAGGACCTGAAGCTCCTCAATTCTGAAATTGGCCGGTTAAGCCAGTCTGCAACATTAGTCTGTGACGTCTTTACTACCAATAATGTTATGGGTGGAAACAGACCTGTCAAGAAAAGCTATCTCACTGGACGGCCTCTGGGATCAGCTGTTCAAGAGAAGTTCAATCTCTTCATTTCAGAAGTGTTTCTGCCCATTTATGTGACGACAAATGCAATGAGGGCTGACTTTTGGTTAATCGACTACAAAGACGAAGCCACAAAAACCACTGCTATCCTCATGGTCTTCGTTTTTGGGGTCAAACTCTTAGCCACTATGGCTAGTCCATTGTATTTCCGGATGCCCTTCAAGGATGCATTTGTTCTTGCTCTCATTTTAAGCTGCAAAGGAATTGTTCACCTTTCAGCCTATTCAAGGATGCATTTGTACAGGTCAACAGGTTATCCACTTATACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00760 ko01100 ko01110 map00230 map00240 map00760 map01100 map01110

Pfam Domains

Protein Families

SurE

Protein Analysis

402

Amino Acids

45.6

Weight (kDa)

8.12

Isoelectric Point (pI)

38.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M16_C	PF05193	101 - 174	3.1e-06	Peptidase M16 inactive domain
PqqF-like_C_4	PF22456	106 - 193	7.6e-17	PQQ synthase PqqF-like, C-terminal lobe domain 4

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002356)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72880 AT1G72880
fragaria_vesca	FvH4_1g07790 FvH4_1g07790 FvH4_1g07790 FvH4_1g07790 FvH4_6g33730 FvH4_6g33730
malus_domestica	MD09G1191400.v1.1
prunus_persica	Prupe.3G047500_v2.0.a1 Prupe.3G047500_v2.0.a1 Prupe.7G207000_v2.0.a1
pyrus_communis	pycom09g10790
rosa_chinensis	RchiOBHm_Chr2g0093661 RchiOBHm_Chr2g0143621 RchiOBHm_Chr3g0459491
rosa_laevigata	RLG00000016425 RLG00000020054
rosa_multiflora	Rmu_sc0002126.1_g000013 Rmu_sc0004340.1_g000025 Rmu_sc0005308.1_g000007
rosa_roxburghii	Rroxscaffold_2G00101590
rosa_rugosa	Rorug02G0038600 Rorug02G0384500 Rorug05G0356400 Rorug05G0520900
rosa_samantha	Rh1AG149800 Rh1CG141000 Rh1DG156900 Rh2AG085000 Rh2AG436300 Rh2BG085500 Rh2BG443900 Rh2CG087800 Rh2CG422600 Rh3CG098900 Rh3DG098200 Rh6CG030400 Rh6DG029300
rosa_wichuraiana	Rw0G013920 Rw2G035560 Rw3G008140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	510
AatII	GACGTC	1 cut(s)	822
AccIII	TCCGGA	1 cut(s)	1086
AciI	CCGC	1 cut(s)	708
AclWI	GGATC	1 cut(s)	901
AcoI	YGGCCR	1 cut(s)	784
AcuI	CTGAAG	1 cut(s)	782
AcyI	GRCGYC	1 cut(s)	819
AfaI	GTAC	5 cut(s)	16, 46, 66, 416, 1178
AfiI	CCNNNNNNNGG	4 cut(s)	29, 256, 754, 1164
AflIII	ACRYGT	1 cut(s)	557
AgsI	TTSAA	7 cut(s)	73, 184, 538, 905, 916, 1099, 1164
AloI	GAACNNNNNNTCC	2 cut(s)	885, 917
AluBI	AGCT	8 cut(s)	319, 337, 515, 700, 766, 870, 899, 1131
AluI	AGCT	8 cut(s)	319, 337, 515, 700, 766, 870, 899, 1131
Alw26I	GTCTC	1 cut(s)	675
AlwI	GGATC	1 cut(s)	901
Ama87I	CYCGRG	2 cut(s)	338, 752
Aor13HI	TCCGGA	1 cut(s)	1086
AoxI	GGCC	2 cut(s)	784, 884
ApeKI	GCWGC	4 cut(s)	210, 334, 626, 1131
Asp700I	GAANNNNTTC	1 cut(s)	936
AspS9I	GGNCC	1 cut(s)	757
AsuHPI	GGTGA	5 cut(s)	12, 278, 326, 683, 1139
AvaI	CYCGRG	2 cut(s)	338, 752
AvaII	GGWCC	1 cut(s)	757
BbsI	GAAGAC	2 cut(s)	445, 1027
BbvI	GCAGC	4 cut(s)	222, 346, 638, 1118
BccI	CCATC	1 cut(s)	222
BceAI	ACGGC	1 cut(s)	899
BcgI	CGANNNNNNTGC	2 cut(s)	217, 251
BcoDI	GTCTC	1 cut(s)	675
BfaI	CTAG	2 cut(s)	443, 1071
BglI	GCCNNNNNGGC	1 cut(s)	1067
BisI	GCNGC	4 cut(s)	211, 335, 627, 1132
BlsI	GCNGC	4 cut(s)	212, 336, 628, 1133
Bme18I	GGWCC	1 cut(s)	757
BmeT110I	CYCGRG	2 cut(s)	338, 752
BmgT120I	GGNCC	1 cut(s)	757
BmsI	GCATC	5 cut(s)	114, 123, 1080, 1093, 1158
BpiI	GAAGAC	2 cut(s)	445, 1027
BpmI	CTGGAG	2 cut(s)	59, 149
BpuEI	CTTGAG	1 cut(s)	716
Bsa29I	ATCGAT	1 cut(s)	571
BsaAI	YACGTR	1 cut(s)	558
BsaBI	GATNNNNATC	1 cut(s)	152
BsaHI	GRCGYC	1 cut(s)	819
BsaWI	WCCGGW	2 cut(s)	733, 1086
Bsc4I	CCNNNNNNNGG	4 cut(s)	29, 256, 754, 1164
Bse118I	RCCGGY	1 cut(s)	786
Bse1I	ACTGG	3 cut(s)	489, 796, 883
Bse3DI	GCAATG	1 cut(s)	972
Bse8I	GATNNNNATC	1 cut(s)	152
BseAI	TCCGGA	1 cut(s)	1086
BseCI	ATCGAT	1 cut(s)	571
BseGI	GGATG	5 cut(s)	493, 664, 1095, 1108, 1173
BseJI	GATNNNNATC	1 cut(s)	152
BseLI	CCNNNNNNNGG	4 cut(s)	29, 256, 754, 1164
BseMI	GCAATG	1 cut(s)	972
BseMII	CTCAG	2 cut(s)	402, 652
BseNI	ACTGG	3 cut(s)	489, 796, 883
BseRI	GAGGAG	1 cut(s)	758
BseXI	GCAGC	4 cut(s)	222, 346, 638, 1118
BshFI	GGCC	2 cut(s)	786, 886
BshVI	ATCGAT	1 cut(s)	571
BsiHKCI	CYCGRG	2 cut(s)	338, 752
BsiSI	CCGG	3 cut(s)	734, 787, 1087
BslFI	GGGAC	2 cut(s)	22, 337
BslI	CCNNNNNNNGG	4 cut(s)	29, 256, 754, 1164
BsmAI	GTCTC	1 cut(s)	675
BsmFI	GGGAC	2 cut(s)	22, 337
BsmI	GAATGC	2 cut(s)	387, 645
BsnI	GGCC	2 cut(s)	786, 886
BsoBI	CYCGRG	2 cut(s)	338, 752
Bsp13I	TCCGGA	1 cut(s)	1086
Bsp1407I	TGTACA	2 cut(s)	64, 1176
Bsp143I	GATC	1 cut(s)	893
BspACI	CCGC	1 cut(s)	708
BspANI	GGCC	2 cut(s)	786, 886
BspCNI	CTCAG	2 cut(s)	403, 651
BspDI	ATCGAT	1 cut(s)	571
BspEI	TCCGGA	1 cut(s)	1086
BspPI	GGATC	1 cut(s)	901
BsrDI	GCAATG	1 cut(s)	972
BsrFI	RCCGGY	1 cut(s)	786
BsrGI	TGTACA	2 cut(s)	64, 1176
BsrI	ACTGG	3 cut(s)	489, 796, 883
BssAI	RCCGGY	1 cut(s)	786
BssMI	GATC	1 cut(s)	893
BssNI	GRCGYC	1 cut(s)	819
Bst6I	CTCTTC	3 cut(s)	179, 239, 926
BstACI	GRCGYC	1 cut(s)	819
BstAUI	TGTACA	2 cut(s)	64, 1176
BstBAI	YACGTR	1 cut(s)	558
BstC8I	GCNNGC	1 cut(s)	242
BstDEI	CTNAG	3 cut(s)	411, 638, 1057
BstENI	CCTNNNNNAGG	2 cut(s)	752, 1162
BstF5I	GGATG	5 cut(s)	493, 664, 1095, 1108, 1173
BstKTI	GATC	1 cut(s)	896
BstMAI	GTCTC	1 cut(s)	675
BstMBI	GATC	1 cut(s)	893
BstMWI	GCNNNNNNNGC	4 cut(s)	133, 792, 971, 1067
BstV1I	GCAGC	4 cut(s)	222, 346, 638, 1118
BstV2I	GAAGAC	2 cut(s)	445, 1027
Bsu15I	ATCGAT	1 cut(s)	571
BsuRI	GGCC	2 cut(s)	786, 886
BsuTUI	ATCGAT	1 cut(s)	571
BtsCI	GGATG	5 cut(s)	493, 664, 1095, 1108, 1173
BtsI	GCAGTG	1 cut(s)	1017
BtsIMutI	CAGTG	3 cut(s)	359, 876, 1017
Cac8I	GCNNGC	1 cut(s)	242
Cfr10I	RCCGGY	1 cut(s)	786
Cfr13I	GGNCC	1 cut(s)	757
ClaI	ATCGAT	1 cut(s)	571
Csp6I	GTAC	5 cut(s)	15, 45, 65, 415, 1177
CviAII	CATG	1 cut(s)	1030
CviQI	GTAC	5 cut(s)	15, 45, 65, 415, 1177
DdeI	CTNAG	3 cut(s)	411, 638, 1057
DpnI	GATC	1 cut(s)	895
DpnII	GATC	1 cut(s)	893
DraI	TTTAAA	1 cut(s)	369
EaeI	YGGCCR	1 cut(s)	784
Eam1104I	CTCTTC	3 cut(s)	179, 239, 926
EarI	CTCTTC	3 cut(s)	179, 239, 926
Eco47I	GGWCC	1 cut(s)	757
Eco57I	CTGAAG	1 cut(s)	782
Eco88I	CYCGRG	2 cut(s)	338, 752
EcoNI	CCTNNNNNAGG	2 cut(s)	752, 1162
EcoO109I	RGGNCCY	1 cut(s)	757
EcoT22I	ATGCAT	2 cut(s)	1108, 1173
FaeI	CATG	1 cut(s)	1033
FaqI	GGGAC	2 cut(s)	22, 337
FatI	CATG	1 cut(s)	1029
Fnu4HI	GCNGC	4 cut(s)	211, 335, 627, 1132
FokI	GGATG	5 cut(s)	500, 671, 1102, 1115, 1180
Fsp4HI	GCNGC	4 cut(s)	211, 335, 627, 1132
FspBI	CTAG	2 cut(s)	443, 1071
GluI	GCNGC	4 cut(s)	211, 335, 627, 1132
GsuI	CTGGAG	2 cut(s)	59, 149
HaeIII	GGCC	2 cut(s)	786, 886
HapII	CCGG	3 cut(s)	734, 787, 1087
Hin1I	GRCGYC	1 cut(s)	819
Hin1II	CATG	1 cut(s)	1033
HincII	GTYRAC	1 cut(s)	1185
HindII	GTYRAC	1 cut(s)	1185
HinfI	GANTC	1 cut(s)	494
HpaII	CCGG	3 cut(s)	734, 787, 1087
HphI	GGTGA	5 cut(s)	12, 278, 326, 683, 1139
Hpy166II	GTNNAC	3 cut(s)	45, 1147, 1185
Hpy188I	TCNGA	6 cut(s)	123, 412, 641, 651, 778, 931
Hpy188III	TCNNGA	7 cut(s)	38, 362, 464, 752, 862, 905, 1087
Hpy8I	GTNNAC	3 cut(s)	45, 1147, 1185
HpyAV	CCTTC	6 cut(s)	67, 128, 473, 646, 758, 1105
HpyCH4IV	ACGT	2 cut(s)	557, 819
HpyCH4V	TGCA	6 cut(s)	136, 803, 965, 1106, 1134, 1171
HpyF10VI	GCNNNNNNNGC	4 cut(s)	133, 792, 971, 1067
HpyF3I	CTNAG	3 cut(s)	411, 638, 1057
HpySE526I	ACGT	2 cut(s)	557, 819
Hsp92I	GRCGYC	1 cut(s)	819
Hsp92II	CATG	1 cut(s)	1033
Kpn2I	TCCGGA	1 cut(s)	1086
Kzo9I	GATC	1 cut(s)	893
LmnI	GCTCC	2 cut(s)	331, 771
Lsp1109I	GCAGC	4 cut(s)	222, 346, 638, 1118
LweI	GCATC	5 cut(s)	114, 123, 1080, 1093, 1158
MaeI	CTAG	2 cut(s)	443, 1071
MaeII	ACGT	2 cut(s)	557, 819
MaeIII	GTNAC	3 cut(s)	703, 815, 952
MalI	GATC	1 cut(s)	895
MboI	GATC	1 cut(s)	893
MboII	GAAGA	9 cut(s)	105, 196, 226, 450, 479, 550, 644, 913, 1027
MluCI	AATT	4 cut(s)	505, 772, 780, 1140
MmeI	TCCRAC	1 cut(s)	456
MnlI	CCTC	9 cut(s)	66, 179, 180, 649, 748, 779, 897, 963, 1037
Mph1103I	ATGCAT	2 cut(s)	1108, 1173
MroI	TCCGGA	1 cut(s)	1086
MroXI	GAANNNNTTC	1 cut(s)	936
MseI	TTAA	6 cut(s)	279, 368, 594, 791, 986, 1127
MslI	CAYNNNNRTG	1 cut(s)	950
MspA1I	CMGCKG	1 cut(s)	899
MspI	CCGG	3 cut(s)	734, 787, 1087
Mva1269I	GAATGC	2 cut(s)	387, 645
MwoI	GCNNNNNNNGC	4 cut(s)	133, 792, 971, 1067
NdeII	GATC	1 cut(s)	893
NlaIII	CATG	1 cut(s)	1033
NmuCI	GTSAC	3 cut(s)	703, 815, 952
NsiI	ATGCAT	2 cut(s)	1108, 1173
PaeR7I	CTCGAG	1 cut(s)	752
PctI	GAATGC	2 cut(s)	387, 645
PdmI	GAANNNNTTC	1 cut(s)	936
PfeI	GAWTC	1 cut(s)	494
PkrI	GCNGC	4 cut(s)	212, 336, 628, 1133
Ppu21I	YACGTR	1 cut(s)	558
PpuMI	RGGWCCY	1 cut(s)	757
PsiI	TTATAA	1 cut(s)	510
Psp5II	RGGWCCY	1 cut(s)	757
PspPI	GGNCC	1 cut(s)	757
PspPPI	RGGWCCY	1 cut(s)	757
PvuII	CAGCTG	1 cut(s)	899
RsaI	GTAC	5 cut(s)	16, 46, 66, 416, 1178
RsaNI	GTAC	5 cut(s)	15, 45, 65, 415, 1177
RseI	CAYNNNNRTG	1 cut(s)	950
SaqAI	TTAA	6 cut(s)	279, 368, 594, 791, 986, 1127
SatI	GCNGC	4 cut(s)	211, 335, 627, 1132
Sau3AI	GATC	1 cut(s)	893
Sau96I	GGNCC	1 cut(s)	757
SfaNI	GCATC	5 cut(s)	114, 123, 1080, 1093, 1158
Sfr274I	CTCGAG	1 cut(s)	752
SinI	GGWCC	1 cut(s)	757
SlaI	CTCGAG	1 cut(s)	752
SmiMI	CAYNNNNRTG	1 cut(s)	950
SmlI	CTYRAG	2 cut(s)	695, 752
SmoI	CTYRAG	2 cut(s)	695, 752
Sse9I	AATT	4 cut(s)	505, 772, 780, 1140
SsiI	CCGC	1 cut(s)	708
SspMI	CTAG	2 cut(s)	443, 1071
TaiI	ACGT	2 cut(s)	560, 822
TaqI	TCGA	3 cut(s)	571, 753, 990
TasI	AATT	4 cut(s)	505, 772, 780, 1140
TatI	WGTACW	5 cut(s)	14, 44, 64, 414, 1176
TfiI	GAWTC	1 cut(s)	494
Tru1I	TTAA	6 cut(s)	279, 368, 594, 791, 986, 1127
Tru9I	TTAA	6 cut(s)	279, 368, 594, 791, 986, 1127
TscAI	CASTG	3 cut(s)	359, 883, 1024
TseFI	GTSAC	3 cut(s)	703, 815, 952
TseI	GCWGC	4 cut(s)	210, 334, 626, 1131
Tsp45I	GTSAC	3 cut(s)	703, 815, 952
TspDTI	ATGAA	4 cut(s)	142, 182, 442, 913
TspRI	CASTG	3 cut(s)	359, 883, 1024
VpaK11BI	GGWCC	1 cut(s)	757
XagI	CCTNNNNNAGG	2 cut(s)	752, 1162
XcmI	CCANNNNNNNNNTGG	1 cut(s)	838
XhoI	CTCGAG	1 cut(s)	752
XmnI	GAANNNNTTC	1 cut(s)	936
XspI	CTAG	2 cut(s)	443, 1071
ZraI	GACGTC	1 cut(s)	820
Zsp2I	ATGCAT	2 cut(s)	1108, 1173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.