Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0002356

Physical Location & Seq

Genomic Coordinates Forward (+)

7170712 .. 7171748

Gene Structure 1037 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG085000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGAAGGATGCAGCCACTGTGTGCTCACCGTTGATATGTGCAGCTGTAAAAAGCATCCAGGAGGGAGTTTTCCCCAAAAGTTGTTTACTCAATATTGAGATTCCTAGTTGTCCTTTGACAAATAAGGGCTTCAAAGTGACCAAGCAGAGTCAGTGGAGGTCCTCTTTGAGCTGGAAAGCTATGTCAACAAACAAACATCCTCCCCCTGCAAATTTCATGTCCAATCAGCAAAGCCTTGGTATTCAACTAGCACAGCTCAGCCGCGAAGCTTCAATAGCTGGTGCAGCTCGCCGCTTGAACTCTCAGCGCAAGACTGTAGAGGTTGAATCGGTTGGTGTAGCCAGAAAAATGAGCTCCCAAAAAACAGTAAAATTCTTCCGTTTAGAGTTCTTAGAGGAGCAGCAGGAATATGTAGATGAAGATCTAGATATCAGAGCACTTGAAGATGGATTTGTTGCGATTACTCCGATTTGCTTATCTCCATCTGTTCAATCGGAAATTCAAACGTCAGTGTCGAATTGGATTGCTGGAGCAGTACTTTCGAACAACCGGTTGGCATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00760 ko01100 ko01110 map00230 map00240 map00760 map01100 map01110

Pfam Domains

Protein Families

SurE

Protein Analysis

187

Amino Acids

20.56

Weight (kDa)

8.87

Isoelectric Point (pI)

67.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002356)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72880 AT1G72880
fragaria_vesca	FvH4_1g07790 FvH4_1g07790 FvH4_1g07790 FvH4_1g07790 FvH4_6g33730 FvH4_6g33730
malus_domestica	MD09G1191400.v1.1
prunus_persica	Prupe.3G047500_v2.0.a1 Prupe.3G047500_v2.0.a1 Prupe.7G207000_v2.0.a1
pyrus_communis	pycom09g10790
rosa_chinensis	RchiOBHm_Chr2g0093661 RchiOBHm_Chr2g0143621 RchiOBHm_Chr3g0459491
rosa_laevigata	RLG00000016425 RLG00000020054
rosa_multiflora	Rmu_sc0002126.1_g000013 Rmu_sc0004340.1_g000025 Rmu_sc0005308.1_g000007
rosa_roxburghii	Rroxscaffold_2G00101590
rosa_rugosa	Rorug02G0038600 Rorug02G0384500 Rorug05G0356400 Rorug05G0520900
rosa_samantha	Rh1AG149800 Rh1CG141000 Rh1DG156900 Rh2AG085000 Rh2AG436300 Rh2BG085500 Rh2BG443900 Rh2CG087800 Rh2CG422600 Rh3CG098900 Rh3DG098200 Rh6CG030400 Rh6DG029300
rosa_wichuraiana	Rw0G013920 Rw2G035560 Rw3G008140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	264
AciI	CCGC	2 cut(s)	262, 292
AcsI	RAATTY	3 cut(s)	211, 371, 498
AdeI	CACNNNGTG	1 cut(s)	21
AfaI	GTAC	1 cut(s)	537
AgeI	ACCGGT	1 cut(s)	549
AgsI	TTSAA	8 cut(s)	133, 245, 273, 298, 326, 443, 491, 503
AjnI	CCWGG	1 cut(s)	57
AjuI	GAANNNNNNNTTGG	1 cut(s)	536
AluBI	AGCT	8 cut(s)	44, 171, 179, 256, 269, 278, 287, 354
AluI	AGCT	8 cut(s)	44, 171, 179, 256, 269, 278, 287, 354
Alw21I	GWGCWC	3 cut(s)	26, 356, 439
AlwNI	CAGNNNCTG	1 cut(s)	17
ApeKI	GCWGC	4 cut(s)	11, 41, 284, 400
ApoI	RAATTY	3 cut(s)	211, 371, 498
ArsI	GACNNNNNNTTYG	2 cut(s)	203, 235
AsiGI	ACCGGT	1 cut(s)	549
AspLEI	GCGC	1 cut(s)	309
AspS9I	GGNCC	1 cut(s)	159
AsuHPI	GGTGA	1 cut(s)	18
AsuII	TTCGAA	1 cut(s)	542
AvaII	GGWCC	1 cut(s)	159
BanII	GRGCYC	1 cut(s)	356
Bbv12I	GWGCWC	3 cut(s)	26, 356, 439
BbvI	GCAGC	4 cut(s)	23, 53, 296, 412
BccI	CCATC	2 cut(s)	440, 490
BcgI	CGANNNNNNTGC	2 cut(s)	522, 556
BciT130I	CCWGG	1 cut(s)	59
BfaI	CTAG	3 cut(s)	105, 248, 425
BfmI	CTRYAG	1 cut(s)	315
BglII	AGATCT	1 cut(s)	421
BisI	GCNGC	6 cut(s)	12, 42, 262, 285, 292, 401
BlpI	GCTNAGC	1 cut(s)	257
BlsI	GCNGC	6 cut(s)	13, 43, 263, 286, 293, 402
BmcAI	AGTACT	1 cut(s)	537
Bme1390I	CCNGG	1 cut(s)	59
Bme18I	GGWCC	1 cut(s)	159
BmgT120I	GGNCC	1 cut(s)	159
BmrFI	CCNGG	1 cut(s)	59
BmsI	GCATC	1 cut(s)	63
BpmI	CTGGAG	1 cut(s)	549
Bpu1102I	GCTNAGC	1 cut(s)	257
Bpu14I	TTCGAA	1 cut(s)	542
BsaBI	GATNNNNATC	1 cut(s)	420
BsaJI	CCNNGG	1 cut(s)	235
BsaWI	WCCGGW	1 cut(s)	549
Bse118I	RCCGGY	1 cut(s)	549
Bse8I	GATNNNNATC	1 cut(s)	420
BseBI	CCWGG	1 cut(s)	59
BseDI	CCNNGG	1 cut(s)	235
BseGI	GGATG	3 cut(s)	13, 54, 196
BseJI	GATNNNNATC	1 cut(s)	420
BseMII	CTCAG	2 cut(s)	271, 317
BseRI	GAGGAG	1 cut(s)	410
BseXI	GCAGC	4 cut(s)	23, 53, 296, 412
BsgI	GTGCAG	2 cut(s)	60, 303
Bsh1236I	CGCG	1 cut(s)	264
BshTI	ACCGGT	1 cut(s)	549
BsiHKAI	GWGCWC	3 cut(s)	26, 356, 439
BsiSI	CCGG	1 cut(s)	550
Bsp119I	TTCGAA	1 cut(s)	542
Bsp1286I	GDGCHC	3 cut(s)	26, 356, 439
Bsp143I	GATC	1 cut(s)	421
Bsp1720I	GCTNAGC	1 cut(s)	257
BspACI	CCGC	2 cut(s)	262, 292
BspCNI	CTCAG	2 cut(s)	270, 316
BspFNI	CGCG	1 cut(s)	264
BspT104I	TTCGAA	1 cut(s)	542
BsrFI	RCCGGY	1 cut(s)	549
BssAI	RCCGGY	1 cut(s)	549
BssECI	CCNNGG	1 cut(s)	235
BssMI	GATC	1 cut(s)	421
BssT1I	CCWWGG	1 cut(s)	235
Bst2UI	CCWGG	1 cut(s)	59
Bst4CI	ACNGT	4 cut(s)	19, 30, 316, 367
BstBI	TTCGAA	1 cut(s)	542
BstC8I	GCNNGC	1 cut(s)	289
BstDEI	CTNAG	3 cut(s)	257, 303, 391
BstF5I	GGATG	3 cut(s)	13, 54, 196
BstFNI	CGCG	1 cut(s)	264
BstHHI	GCGC	1 cut(s)	309
BstKTI	GATC	1 cut(s)	424
BstMBI	GATC	1 cut(s)	421
BstMWI	GCNNNNNNNGC	2 cut(s)	275, 284
BstNI	CCWGG	1 cut(s)	59
BstSCI	CCNGG	1 cut(s)	57
BstSFI	CTRYAG	1 cut(s)	315
BstUI	CGCG	1 cut(s)	264
BstV1I	GCAGC	4 cut(s)	23, 53, 296, 412
BstX2I	RGATCY	1 cut(s)	421
BstYI	RGATCY	1 cut(s)	421
BtsCI	GGATG	3 cut(s)	13, 54, 196
BtsIMutI	CAGTG	3 cut(s)	15, 158, 516
Cac8I	GCNNGC	1 cut(s)	289
CaiI	CAGNNNCTG	1 cut(s)	17
CfoI	GCGC	1 cut(s)	309
Cfr10I	RCCGGY	1 cut(s)	549
Cfr13I	GGNCC	1 cut(s)	159
Csp6I	GTAC	1 cut(s)	536
CspAI	ACCGGT	1 cut(s)	549
CviAII	CATG	1 cut(s)	217
CviQI	GTAC	1 cut(s)	536
DdeI	CTNAG	3 cut(s)	257, 303, 391
DpnI	GATC	1 cut(s)	423
DpnII	GATC	1 cut(s)	421
DraIII	CACNNNGTG	1 cut(s)	21
Ecl136II	GAGCTC	1 cut(s)	354
Eco130I	CCWWGG	1 cut(s)	235
Eco24I	GRGCYC	1 cut(s)	356
Eco32I	GATATC	1 cut(s)	430
Eco47I	GGWCC	1 cut(s)	159
Eco53kI	GAGCTC	1 cut(s)	354
EcoICRI	GAGCTC	1 cut(s)	354
EcoO109I	RGGNCCY	1 cut(s)	159
EcoRII	CCWGG	1 cut(s)	57
EcoRV	GATATC	1 cut(s)	430
EcoT14I	CCWWGG	1 cut(s)	235
EcoT38I	GRGCYC	1 cut(s)	356
ErhI	CCWWGG	1 cut(s)	235
FaeI	CATG	1 cut(s)	220
FaiI	YATR	5 cut(s)	37, 182, 218, 411, 562
FatI	CATG	1 cut(s)	216
Fnu4HI	GCNGC	6 cut(s)	12, 42, 262, 285, 292, 401
FokI	GGATG	3 cut(s)	20, 41, 183
FriOI	GRGCYC	1 cut(s)	356
Fsp4HI	GCNGC	6 cut(s)	12, 42, 262, 285, 292, 401
FspBI	CTAG	3 cut(s)	105, 248, 425
GlaI	GCGC	1 cut(s)	308
GluI	GCNGC	6 cut(s)	12, 42, 262, 285, 292, 401
GsuI	CTGGAG	1 cut(s)	549
HapII	CCGG	1 cut(s)	550
HhaI	GCGC	1 cut(s)	309
Hin1II	CATG	1 cut(s)	220
Hin6I	GCGC	1 cut(s)	307
HinP1I	GCGC	1 cut(s)	307
HincII	GTYRAC	1 cut(s)	186
HindII	GTYRAC	1 cut(s)	186
HindIII	AAGCTT	1 cut(s)	267
HinfI	GANTC	3 cut(s)	100, 148, 326
HpaII	CCGG	1 cut(s)	550
HphI	GGTGA	1 cut(s)	18
Hpy166II	GTNNAC	2 cut(s)	86, 186
Hpy188I	TCNGA	3 cut(s)	434, 468, 496
Hpy188III	TCNNGA	1 cut(s)	425
Hpy8I	GTNNAC	2 cut(s)	86, 186
HpyCH4III	ACNGT	4 cut(s)	19, 30, 316, 367
HpyCH4IV	ACGT	1 cut(s)	506
HpyCH4V	TGCA	4 cut(s)	11, 41, 209, 284
HpyF10VI	GCNNNNNNNGC	2 cut(s)	275, 284
HpyF3I	CTNAG	3 cut(s)	257, 303, 391
HpySE526I	ACGT	1 cut(s)	506
Hsp92II	CATG	1 cut(s)	220
HspAI	GCGC	1 cut(s)	307
Kzo9I	GATC	1 cut(s)	421
LmnI	GCTCC	3 cut(s)	359, 397, 530
LpnPI	CCDG	8 cut(s)	44, 71, 157, 219, 264, 355, 389, 513
Lsp1109I	GCAGC	4 cut(s)	23, 53, 296, 412
LweI	GCATC	1 cut(s)	63
MaeI	CTAG	3 cut(s)	105, 248, 425
MaeII	ACGT	1 cut(s)	506
MaeIII	GTNAC	1 cut(s)	136
MalI	GATC	1 cut(s)	423
MboI	GATC	1 cut(s)	421
MboII	GAAGA	3 cut(s)	367, 431, 455
MflI	RGATCY	1 cut(s)	421
MhlI	GDGCHC	3 cut(s)	26, 356, 439
MluCI	AATT	4 cut(s)	211, 371, 498, 517
MlyI	GAGTC	1 cut(s)	157
MnlI	CCTC	6 cut(s)	55, 150, 172, 210, 313, 388
MspA1I	CMGCKG	1 cut(s)	44
MspI	CCGG	1 cut(s)	550
MspR9I	CCNGG	1 cut(s)	59
MvaI	CCWGG	1 cut(s)	59
MvnI	CGCG	1 cut(s)	264
MwoI	GCNNNNNNNGC	2 cut(s)	275, 284
NdeII	GATC	1 cut(s)	421
NlaIII	CATG	1 cut(s)	220
NmuCI	GTSAC	1 cut(s)	136
NspV	TTCGAA	1 cut(s)	542
PcsI	WCGNNNNNNNCGW	1 cut(s)	512
PfeI	GAWTC	2 cut(s)	100, 326
PfoI	TCCNGGA	1 cut(s)	57
PinAI	ACCGGT	1 cut(s)	549
PkrI	GCNGC	6 cut(s)	13, 43, 263, 286, 293, 402
PleI	GAGTC	1 cut(s)	156
PpsI	GAGTC	1 cut(s)	156
PpuMI	RGGWCCY	1 cut(s)	159
Psp124BI	GAGCTC	1 cut(s)	356
Psp5II	RGGWCCY	1 cut(s)	159
Psp6I	CCWGG	1 cut(s)	57
PspGI	CCWGG	1 cut(s)	57
PspPI	GGNCC	1 cut(s)	159
PspPPI	RGGWCCY	1 cut(s)	159
PstNI	CAGNNNCTG	1 cut(s)	17
PsuI	RGATCY	1 cut(s)	421
PvuII	CAGCTG	1 cut(s)	44
RsaI	GTAC	1 cut(s)	537
RsaNI	GTAC	1 cut(s)	536
SacI	GAGCTC	1 cut(s)	356
SatI	GCNGC	6 cut(s)	12, 42, 262, 285, 292, 401
Sau3AI	GATC	1 cut(s)	421
Sau96I	GGNCC	1 cut(s)	159
ScaI	AGTACT	1 cut(s)	537
SchI	GAGTC	1 cut(s)	157
ScrFI	CCNGG	1 cut(s)	59
SduI	GDGCHC	3 cut(s)	26, 356, 439
SfaNI	GCATC	1 cut(s)	63
SfcI	CTRYAG	1 cut(s)	315
SfuI	TTCGAA	1 cut(s)	542
SinI	GGWCC	1 cut(s)	159
Sse9I	AATT	4 cut(s)	211, 371, 498, 517
SsiI	CCGC	2 cut(s)	262, 292
SspI	AATATT	1 cut(s)	94
SspMI	CTAG	3 cut(s)	105, 248, 425
SstI	GAGCTC	1 cut(s)	356
StyD4I	CCNGG	1 cut(s)	57
StyI	CCWWGG	1 cut(s)	235
TaaI	ACNGT	4 cut(s)	19, 30, 316, 367
TaiI	ACGT	1 cut(s)	509
TaqI	TCGA	2 cut(s)	515, 542
TasI	AATT	4 cut(s)	211, 371, 498, 517
TatI	WGTACW	1 cut(s)	535
TauI	GCSGC	2 cut(s)	264, 294
TfiI	GAWTC	2 cut(s)	100, 326
TscAI	CASTG	3 cut(s)	22, 158, 516
TseFI	GTSAC	1 cut(s)	136
TseI	GCWGC	4 cut(s)	11, 41, 284, 400
Tsp45I	GTSAC	1 cut(s)	136
TspDTI	ATGAA	3 cut(s)	17, 205, 432
TspGWI	ACGGA	1 cut(s)	368
TspRI	CASTG	3 cut(s)	22, 158, 516
VpaK11BI	GGWCC	1 cut(s)	159
XapI	RAATTY	3 cut(s)	211, 371, 498
XbaI	TCTAGA	1 cut(s)	424
XspI	CTAG	3 cut(s)	105, 248, 425
ZrmI	AGTACT	1 cut(s)	537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.