Rw0G013920

Survival protein SurE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00621
OG0002356
Physical Location & Seq
Reverse (-)
133728 .. 135929
2202 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G013920.1

Sequence Viewer

Length: 1155 bp
ATGACGACCTCTCTGAAAAGCAGTTTCATGCCTCCGAGCTTGATCTCGAATCTTCAACAAGTTTTGGCTCTCAAAAGCGACGGTGCAGAGAAGCATGCTTCTGAACCAAACAAAGTTTCTTGTAATTCTTCTTCCTCTTCATGTTGCGCTTTGATGCCTTCTGAGGACACTAAAGACAAGCAGTGTCCAAAGCCAGTGGTTTTAGTCACAAATGGAGAGGGAATCGAGTCTCCTGGCCTCACATTTCTCGTCCAAGCTCTCCTTCTCGATTCTCATCTTGAGGTCTGCGTCTGCGCTCCTAAATCAGATAGATCAGTGGCTGGCCACTCTGTAACTGTTGGTGAGACCATTTCAGTGTCTTCTGCACAAATCAATGGCGCCACGGCTTTTGAAGTTTCCGGGACTCCTGCGGATTGTATCTCTTTAGCATTATCAGGGGCATTGTTCTCCAACTTTTCAAAGCCTGCTTTGGTAGTCAGTGGAATAAACAGAGGATCAAGTTCTGGAATCAACATAGAGGCGTTGCTATGCGGTGTACCCTCTCTGTGCATATCAATGAATTGGAAGAAGGATGTAAGCTGTGAAAGTGATATGAAGGATGCAGCCACTGTGTGCTCACCGTTGATATGTGCAGCTGCAAAAAGCATCCAGGAGGGAGTTTTCCCCAAAAGTTGTTTACTCAATATTGAGATTCCTAGTTGTCCTTTGACAAATAAGGGCTTCAAAGTGACCAAGCAGAGTCAGTGGAGGTCCTCTTTGAGCTGGAAAGCTGTGTCAACAAACAAACATCCTCCCCCTGCAAATTTCATGTCCAATCAGCAAAGCCTTGGTATTCAACTAGCACAGCTCAGCCGCGAAGCTTCAATAGCTGGTGCAGCTCGCCGCTTGAACTCTCAGCGCAAGACTGTAGAGGTTGAATCGGTTGGTGTAGCCAGAAAAATGAGCTCCCAAAAAACAGTAAAATTCTTCCGTTTAGAGTTCTTAGAGGAGCAGCAGGAATATGTAGATGAAGATCTAGATATCAGAGCACTTGAAGATGGATTTGTTGCGATTACTCCGATTTGCTTATCTCCATCTGTTCAATCGGAAATTCAAACGTCAGTGTCGAATTGGATTGCTGGAGCAGTACTTTCGAACAACCGGTTGGCATTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 ko00760 ko01100 ko01110 map00230 map00240 map00760 map01100 map01110
Pfam Domains
Protein Families
SurE

Protein Analysis

384

Amino Acids

40.79

Weight (kDa)

6.45

Isoelectric Point (pI)

55.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SurE PF01975 67 - 251 7.9e-39 Survival protein SurE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 377
AccII CGCG 1 cut(s) 855
AciI CCGC 4 cut(s) 410, 531, 853, 883
AclWI GGATC 1 cut(s) 502
AcoI YGGCCR 1 cut(s) 322
AcsI RAATTY 3 cut(s) 802, 962, 1089
AcyI GRCGYC 1 cut(s) 378
AdeI CACNNNGTG 1 cut(s) 612
AfaI GTAC 2 cut(s) 537, 1128
AgeI ACCGGT 1 cut(s) 1140
AjnI CCWGG 2 cut(s) 232, 648
AjuI GAANNNNNNNTTGG 5 cut(s) 100, 132, 246, 278, 1127
Alw21I GWGCWC 3 cut(s) 617, 947, 1030
Alw26I GTCTC 2 cut(s) 234, 338
AlwI GGATC 1 cut(s) 502
AlwNI CAGNNNCTG 2 cut(s) 320, 608
AoxI GGCC 2 cut(s) 235, 322
ApeKI GCWGC 5 cut(s) 602, 632, 635, 875, 991
ApoI RAATTY 3 cut(s) 802, 962, 1089
ArsI GACNNNNNNTTYG 2 cut(s) 794, 826
AsiGI ACCGGT 1 cut(s) 1140
AspLEI GCGC 4 cut(s) 149, 296, 380, 900
AspS9I GGNCC 1 cut(s) 750
AsuC2I CCSGG 1 cut(s) 400
AsuHPI GGTGA 2 cut(s) 353, 609
AsuII TTCGAA 1 cut(s) 1133
AvaII GGWCC 1 cut(s) 750
BalI TGGCCA 1 cut(s) 324
BanI GGYRCC 1 cut(s) 377
BanII GRGCYC 1 cut(s) 947
BarI GAAGNNNNNNTAC 2 cut(s) 115, 147
BbsI GAAGAC 1 cut(s) 351
Bbv12I GWGCWC 3 cut(s) 617, 947, 1030
BbvI GCAGC 5 cut(s) 614, 622, 644, 887, 1003
BccI CCATC 2 cut(s) 1031, 1081
BceAI ACGGC 1 cut(s) 399
BcgI CGANNNNNNTGC 2 cut(s) 1113, 1147
BciT130I CCWGG 2 cut(s) 234, 650
BcnI CCSGG 1 cut(s) 400
BcoDI GTCTC 2 cut(s) 234, 338
BfaI CTAG 3 cut(s) 696, 839, 1016
BfmI CTRYAG 1 cut(s) 906
BfoI RGCGCY 1 cut(s) 381
BglII AGATCT 1 cut(s) 1012
BisI GCNGC 7 cut(s) 603, 633, 636, 853, 876, 883, 992
BlpI GCTNAGC 1 cut(s) 848
BlsI GCNGC 7 cut(s) 604, 634, 637, 854, 877, 884, 993
BmcAI AGTACT 1 cut(s) 1128
Bme1390I CCNGG 3 cut(s) 234, 400, 650
Bme18I GGWCC 1 cut(s) 750
BmgT120I GGNCC 1 cut(s) 750
BmiI GGNNCC 1 cut(s) 379
BmrFI CCNGG 3 cut(s) 234, 400, 650
BmsI GCATC 3 cut(s) 144, 589, 654
BpiI GAAGAC 1 cut(s) 351
BpmI CTGGAG 1 cut(s) 1140
Bpu1102I GCTNAGC 1 cut(s) 848
Bpu14I TTCGAA 1 cut(s) 1133
BpuEI CTTGAG 1 cut(s) 299
BpuMI CCSGG 1 cut(s) 400
BsaBI GATNNNNATC 2 cut(s) 273, 1011
BsaHI GRCGYC 1 cut(s) 378
BsaI GGTCTC 1 cut(s) 338
BsaJI CCNNGG 2 cut(s) 381, 826
BsaWI WCCGGW 1 cut(s) 1140
Bse118I RCCGGY 1 cut(s) 1140
Bse1I ACTGG 1 cut(s) 194
Bse8I GATNNNNATC 2 cut(s) 273, 1011
BseBI CCWGG 2 cut(s) 234, 650
BseDI CCNNGG 2 cut(s) 381, 826
BseGI GGATG 4 cut(s) 577, 604, 645, 787
BseJI GATNNNNATC 2 cut(s) 273, 1011
BseMII CTCAG 3 cut(s) 153, 862, 908
BseNI ACTGG 1 cut(s) 194
BseRI GAGGAG 1 cut(s) 1001
BseXI GCAGC 5 cut(s) 614, 622, 644, 887, 1003
BsgI GTGCAG 4 cut(s) 105, 348, 651, 894
Bsh1236I CGCG 1 cut(s) 855
BshFI GGCC 2 cut(s) 237, 324
BshNI GGYRCC 1 cut(s) 377
BshTI ACCGGT 1 cut(s) 1140
BsiHKAI GWGCWC 3 cut(s) 617, 947, 1030
BsiSI CCGG 2 cut(s) 399, 1141
BslFI GGGAC 1 cut(s) 415
BsmAI GTCTC 2 cut(s) 234, 338
BsmFI GGGAC 1 cut(s) 415
BsnI GGCC 2 cut(s) 237, 324
Bso31I GGTCTC 1 cut(s) 338
Bsp119I TTCGAA 1 cut(s) 1133
Bsp1286I GDGCHC 3 cut(s) 617, 947, 1030
Bsp143I GATC 4 cut(s) 42, 311, 494, 1012
Bsp1720I GCTNAGC 1 cut(s) 848
BspACI CCGC 4 cut(s) 410, 531, 853, 883
BspANI GGCC 2 cut(s) 237, 324
BspCNI CTCAG 3 cut(s) 154, 861, 907
BspFNI CGCG 1 cut(s) 855
BspLI GGNNCC 1 cut(s) 379
BspPI GGATC 1 cut(s) 502
BspT104I TTCGAA 1 cut(s) 1133
BspT107I GGYRCC 1 cut(s) 377
BspTNI GGTCTC 1 cut(s) 338
BsrFI RCCGGY 1 cut(s) 1140
BsrI ACTGG 1 cut(s) 194
BssAI RCCGGY 1 cut(s) 1140
BssECI CCNNGG 2 cut(s) 381, 826
BssMI GATC 4 cut(s) 42, 311, 494, 1012
BssNI GRCGYC 1 cut(s) 378
BssT1I CCWWGG 1 cut(s) 826
Bst2UI CCWGG 2 cut(s) 234, 650
Bst4CI ACNGT 6 cut(s) 83, 337, 610, 621, 907, 958
Bst6I CTCTTC 1 cut(s) 142
BstACI GRCGYC 1 cut(s) 378
BstBI TTCGAA 1 cut(s) 1133
BstC8I GCNNGC 4 cut(s) 96, 322, 465, 880
BstDEI CTNAG 4 cut(s) 162, 848, 894, 982
BstDSI CCRYGG 1 cut(s) 381
BstF5I GGATG 4 cut(s) 577, 604, 645, 787
BstFNI CGCG 1 cut(s) 855
BstH2I RGCGCY 1 cut(s) 381
BstHHI GCGC 4 cut(s) 149, 296, 380, 900
BstKTI GATC 4 cut(s) 45, 314, 497, 1015
BstMAI GTCTC 2 cut(s) 234, 338
BstMBI GATC 4 cut(s) 42, 311, 494, 1012
BstMWI GCNNNNNNNGC 2 cut(s) 866, 875
BstNI CCWGG 2 cut(s) 234, 650
BstNSI RCATGY 1 cut(s) 98
BstSCI CCNGG 3 cut(s) 232, 398, 648
BstSFI CTRYAG 1 cut(s) 906
BstUI CGCG 1 cut(s) 855
BstV1I GCAGC 5 cut(s) 614, 622, 644, 887, 1003
BstV2I GAAGAC 1 cut(s) 351
BstX2I RGATCY 1 cut(s) 1012
BstYI RGATCY 1 cut(s) 1012
BsuRI GGCC 2 cut(s) 237, 324
BtgI CCRYGG 1 cut(s) 381
BtsCI GGATG 4 cut(s) 577, 604, 645, 787
BtsI GCAGTG 1 cut(s) 188
BtsIMutI CAGTG 8 cut(s) 188, 201, 321, 360, 484, 606, 749, 1107
Cac8I GCNNGC 4 cut(s) 96, 322, 465, 880
CaiI CAGNNNCTG 2 cut(s) 320, 608
CfoI GCGC 4 cut(s) 149, 296, 380, 900
Cfr10I RCCGGY 1 cut(s) 1140
Cfr13I GGNCC 1 cut(s) 750
CseI GACGC 1 cut(s) 277
Csp6I GTAC 2 cut(s) 536, 1127
CspAI ACCGGT 1 cut(s) 1140
CspCI CAANNNNNGTGG 4 cut(s) 177, 212, 370, 405
CviAII CATG 4 cut(s) 28, 95, 141, 808
CviQI GTAC 2 cut(s) 536, 1127
DdeI CTNAG 4 cut(s) 162, 848, 894, 982
DinI GGCGCC 1 cut(s) 379
DpnI GATC 4 cut(s) 44, 313, 496, 1014
DpnII GATC 4 cut(s) 42, 311, 494, 1012
DraIII CACNNNGTG 1 cut(s) 612
EaeI YGGCCR 1 cut(s) 322
Eam1104I CTCTTC 1 cut(s) 142
EarI CTCTTC 1 cut(s) 142
Ecl136II GAGCTC 1 cut(s) 945
Eco130I CCWWGG 1 cut(s) 826
Eco24I GRGCYC 1 cut(s) 947
Eco31I GGTCTC 1 cut(s) 338
Eco32I GATATC 1 cut(s) 1021
Eco47I GGWCC 1 cut(s) 750
Eco53kI GAGCTC 1 cut(s) 945
EcoICRI GAGCTC 1 cut(s) 945
EcoO109I RGGNCCY 1 cut(s) 750
EcoRII CCWGG 2 cut(s) 232, 648
EcoRV GATATC 1 cut(s) 1021
EcoT14I CCWWGG 1 cut(s) 826
EcoT38I GRGCYC 1 cut(s) 947
EgeI GGCGCC 1 cut(s) 379
EheI GGCGCC 1 cut(s) 379
ErhI CCWWGG 1 cut(s) 826
FaeI CATG 4 cut(s) 31, 98, 144, 811
FalI AAGNNNNNCTT 2 cut(s) 246, 278
FaqI GGGAC 1 cut(s) 415
FatI CATG 4 cut(s) 27, 94, 140, 807
Fnu4HI GCNGC 7 cut(s) 603, 633, 636, 853, 876, 883, 992
FokI GGATG 4 cut(s) 584, 611, 632, 774
FriOI GRGCYC 1 cut(s) 947
Fsp4HI GCNGC 7 cut(s) 603, 633, 636, 853, 876, 883, 992
FspBI CTAG 3 cut(s) 696, 839, 1016
GlaI GCGC 4 cut(s) 148, 295, 379, 899
GluI GCNGC 7 cut(s) 603, 633, 636, 853, 876, 883, 992
GsuI CTGGAG 1 cut(s) 1140
HaeII RGCGCY 1 cut(s) 381
HaeIII GGCC 2 cut(s) 237, 324
HapII CCGG 2 cut(s) 399, 1141
HgaI GACGC 1 cut(s) 277
HhaI GCGC 4 cut(s) 149, 296, 380, 900
Hin1I GRCGYC 1 cut(s) 378
Hin1II CATG 4 cut(s) 31, 98, 144, 811
Hin6I GCGC 4 cut(s) 147, 294, 378, 898
HinP1I GCGC 4 cut(s) 147, 294, 378, 898
HincII GTYRAC 1 cut(s) 777
HindII GTYRAC 1 cut(s) 777
HindIII AAGCTT 1 cut(s) 858
HinfI GANTC 9 cut(s) 49, 222, 227, 269, 403, 507, 691, 739, 917
HpaII CCGG 2 cut(s) 399, 1141
HphI GGTGA 2 cut(s) 353, 609
Hpy166II GTNNAC 3 cut(s) 536, 677, 777
Hpy188I TCNGA 8 cut(s) 15, 36, 103, 163, 307, 1025, 1059, 1087
Hpy188III TCNNGA 5 cut(s) 46, 266, 278, 504, 1016
Hpy8I GTNNAC 3 cut(s) 536, 677, 777
Hpy99I CGWCG 1 cut(s) 83
HpyAV CCTTC 4 cut(s) 168, 272, 562, 589
HpyCH4III ACNGT 6 cut(s) 83, 337, 610, 621, 907, 958
HpyCH4IV ACGT 1 cut(s) 1097
HpyCH4V TGCA 8 cut(s) 86, 365, 549, 602, 632, 638, 800, 875
HpyF10VI GCNNNNNNNGC 2 cut(s) 866, 875
HpyF3I CTNAG 4 cut(s) 162, 848, 894, 982
HpySE526I ACGT 1 cut(s) 1097
Hsp92I GRCGYC 1 cut(s) 378
Hsp92II CATG 4 cut(s) 31, 98, 144, 811
HspAI GCGC 4 cut(s) 147, 294, 378, 898
KasI GGCGCC 1 cut(s) 377
Kzo9I GATC 4 cut(s) 42, 311, 494, 1012
LmnI GCTCC 4 cut(s) 301, 950, 988, 1121
Lsp1109I GCAGC 5 cut(s) 614, 622, 644, 887, 1003
LweI GCATC 3 cut(s) 144, 589, 654
MaeI CTAG 3 cut(s) 696, 839, 1016
MaeII ACGT 1 cut(s) 1097
MaeIII GTNAC 3 cut(s) 205, 331, 727
MalI GATC 4 cut(s) 44, 313, 496, 1014
MboI GATC 4 cut(s) 42, 311, 494, 1012
MboII GAAGA 9 cut(s) 44, 120, 123, 129, 351, 577, 958, 1022, 1046
MflI RGATCY 1 cut(s) 1012
MhlI GDGCHC 3 cut(s) 617, 947, 1030
MlsI TGGCCA 1 cut(s) 324
MluCI AATT 6 cut(s) 124, 559, 802, 962, 1089, 1108
MluNI TGGCCA 1 cut(s) 324
Mly113I GGCGCC 1 cut(s) 378
MlyI GAGTC 3 cut(s) 236, 397, 748
MmeI TCCRAC 1 cut(s) 474
Mox20I TGGCCA 1 cut(s) 324
MscI TGGCCA 1 cut(s) 324
MslI CAYNNNNRTG 2 cut(s) 353, 554
Msp20I TGGCCA 1 cut(s) 324
MspA1I CMGCKG 1 cut(s) 635
MspI CCGG 2 cut(s) 399, 1141
MspR9I CCNGG 3 cut(s) 234, 400, 650
MvaI CCWGG 2 cut(s) 234, 650
MvnI CGCG 1 cut(s) 855
MwoI GCNNNNNNNGC 2 cut(s) 866, 875
NarI GGCGCC 1 cut(s) 378
NciI CCSGG 1 cut(s) 400
NdeII GATC 4 cut(s) 42, 311, 494, 1012
NlaIII CATG 4 cut(s) 31, 98, 144, 811
NlaIV GGNNCC 1 cut(s) 379
NmuCI GTSAC 2 cut(s) 205, 727
NspI RCATGY 1 cut(s) 98
NspV TTCGAA 1 cut(s) 1133
PaeI GCATGC 1 cut(s) 98
PcsI WCGNNNNNNNCGW 1 cut(s) 1103
PfeI GAWTC 6 cut(s) 49, 222, 269, 507, 691, 917
PfoI TCCNGGA 2 cut(s) 398, 648
PinAI ACCGGT 1 cut(s) 1140
PkrI GCNGC 7 cut(s) 604, 634, 637, 854, 877, 884, 993
PleI GAGTC 3 cut(s) 235, 397, 747
PluTI GGCGCC 1 cut(s) 381
PpsI GAGTC 3 cut(s) 235, 397, 747
PpuMI RGGWCCY 1 cut(s) 750
Psp124BI GAGCTC 1 cut(s) 947
Psp5II RGGWCCY 1 cut(s) 750
Psp6I CCWGG 2 cut(s) 232, 648
PspGI CCWGG 2 cut(s) 232, 648
PspN4I GGNNCC 1 cut(s) 379
PspPI GGNCC 1 cut(s) 750
PspPPI RGGWCCY 1 cut(s) 750
PstNI CAGNNNCTG 2 cut(s) 320, 608
PsuI RGATCY 1 cut(s) 1012
PvuII CAGCTG 1 cut(s) 635
RsaI GTAC 2 cut(s) 537, 1128
RsaNI GTAC 2 cut(s) 536, 1127
RseI CAYNNNNRTG 2 cut(s) 353, 554
SacI GAGCTC 1 cut(s) 947
SatI GCNGC 7 cut(s) 603, 633, 636, 853, 876, 883, 992
Sau3AI GATC 4 cut(s) 42, 311, 494, 1012
Sau96I GGNCC 1 cut(s) 750
ScaI AGTACT 1 cut(s) 1128
SchI GAGTC 3 cut(s) 236, 397, 748
ScrFI CCNGG 3 cut(s) 234, 400, 650
SduI GDGCHC 3 cut(s) 617, 947, 1030
SfaNI GCATC 3 cut(s) 144, 589, 654
SfcI CTRYAG 1 cut(s) 906
SfoI GGCGCC 1 cut(s) 379
SfuI TTCGAA 1 cut(s) 1133
SinI GGWCC 1 cut(s) 750
SmiMI CAYNNNNRTG 2 cut(s) 353, 554
SmlI CTYRAG 1 cut(s) 278
SmoI CTYRAG 1 cut(s) 278
SphI GCATGC 1 cut(s) 98
Sse9I AATT 6 cut(s) 124, 559, 802, 962, 1089, 1108
SsiI CCGC 4 cut(s) 410, 531, 853, 883
SspDI GGCGCC 1 cut(s) 377
SspI AATATT 1 cut(s) 685
SspMI CTAG 3 cut(s) 696, 839, 1016
SstI GAGCTC 1 cut(s) 947
StyD4I CCNGG 3 cut(s) 232, 398, 648
StyI CCWWGG 1 cut(s) 826
TaaI ACNGT 6 cut(s) 83, 337, 610, 621, 907, 958
TaiI ACGT 1 cut(s) 1100
TaqI TCGA 5 cut(s) 47, 225, 267, 1106, 1133
TasI AATT 6 cut(s) 124, 559, 802, 962, 1089, 1108
TatI WGTACW 1 cut(s) 1126
TauI GCSGC 2 cut(s) 855, 885
TfiI GAWTC 6 cut(s) 49, 222, 269, 507, 691, 917
TscAI CASTG 8 cut(s) 188, 201, 321, 360, 484, 613, 749, 1107
TseFI GTSAC 2 cut(s) 205, 727
TseI GCWGC 5 cut(s) 602, 632, 635, 875, 991
Tsp45I GTSAC 2 cut(s) 205, 727
TspDTI ATGAA 6 cut(s) 16, 129, 572, 608, 796, 1023
TspGWI ACGGA 1 cut(s) 959
TspRI CASTG 8 cut(s) 188, 201, 321, 360, 484, 613, 749, 1107
VpaK11BI GGWCC 1 cut(s) 750
XapI RAATTY 3 cut(s) 802, 962, 1089
XbaI TCTAGA 1 cut(s) 1015
XceI RCATGY 1 cut(s) 98
XspI CTAG 3 cut(s) 696, 839, 1016
ZrmI AGTACT 1 cut(s) 1128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.