Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005308.1

Orthogroup ID

OG0002356

Physical Location & Seq

Genomic Coordinates Forward (+)

41141 .. 44374

Gene Structure 3234 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005308.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

atgctgcctgcgggcctggtctccaatctccaagacgtgttgagcaaaagaggtggaggtgaccaacccactgagccttcaacttctgaagctgcagaggaccctgttgatagttccaagcccatcgttttggtcaccaatggtgatgggattgactcccctggtcttacttaccttgttgaagctctcgtccgccaaggcctttacaatgtccatgtctgcgctcctcaatcgttgtactcgggtgttgttgctggagctagggaggcactaataagtggagtgccctctttatcaatatcactaaattggaggaaggatgaaagtcaagaaaatgatttcaaagatgcagttgctgtttgtttacctctaataaatgcagcaatcagggatattgagaagggggaattccccaagagttgctttctgaatatagagattccttcatctcctttatcaaacaagggttttaaaataaccaagcaaagcacatggagatctactcccagctggcaagctgtttcagctaatcgttatcctcctggacatttcatgaacagtcaacaaagccttgggattcagcttgcacaacttggccgagatgcatctgctgccggtgcagctcgtcgtgtgacaacacagaagaagaatgtggagattgaatcaattggagctgcaggaaaatctgattttgaacgggtgaaaaagtacttccgactagagtttgtggataaagagcaggaaaatacggatgaggatctggatttcagagcactcgaaagcggatttgtatcggtaactcctctttccctttcaccacatctcgagtccgatactcaaacagctacctccaattggatctcgtctgcacttcaagagcaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00760 ko01100 ko01110 map00230 map00240 map00760 map01100 map01110

Pfam Domains

Protein Families

SurE

Protein Analysis

294

Amino Acids

31.81

Weight (kDa)

4.99

Isoelectric Point (pI)

50.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002356)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72880 AT1G72880
fragaria_vesca	FvH4_1g07790 FvH4_1g07790 FvH4_1g07790 FvH4_1g07790 FvH4_6g33730 FvH4_6g33730
malus_domestica	MD09G1191400.v1.1
prunus_persica	Prupe.3G047500_v2.0.a1 Prupe.3G047500_v2.0.a1 Prupe.7G207000_v2.0.a1
pyrus_communis	pycom09g10790
rosa_chinensis	RchiOBHm_Chr2g0093661 RchiOBHm_Chr2g0143621 RchiOBHm_Chr3g0459491
rosa_laevigata	RLG00000016425 RLG00000020054
rosa_multiflora	Rmu_sc0002126.1_g000013 Rmu_sc0004340.1_g000025 Rmu_sc0005308.1_g000007
rosa_roxburghii	Rroxscaffold_2G00101590
rosa_rugosa	Rorug02G0038600 Rorug02G0384500 Rorug05G0356400 Rorug05G0520900
rosa_samantha	Rh1AG149800 Rh1CG141000 Rh1DG156900 Rh2AG085000 Rh2AG436300 Rh2BG085500 Rh2BG443900 Rh2CG087800 Rh2CG422600 Rh3CG098900 Rh3DG098200 Rh6CG030400 Rh6DG029300
rosa_wichuraiana	Rw0G013920 Rw2G035560 Rw3G008140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	11, 193, 783
AclWI	GGATC	2 cut(s)	765, 866
AcoI	YGGCCR	1 cut(s)	595
AcsI	RAATTY	1 cut(s)	407
AcuI	CTGAAG	1 cut(s)	108
AfaI	GTAC	2 cut(s)	239, 710
AfiI	CCNNNNNNNGG	1 cut(s)	855
AflIII	ACRYGT	1 cut(s)	36
AgsI	TTSAA	6 cut(s)	81, 182, 343, 662, 695, 875
AjiI	CACGTC	1 cut(s)	37
AjnI	CCWGG	3 cut(s)	15, 160, 541
Alw21I	GWGCWC	1 cut(s)	775
Alw26I	GTCTC	1 cut(s)	25
AlwI	GGATC	2 cut(s)	765, 866
AlwNI	CAGNNNCTG	1 cut(s)	356
Ama87I	CYCGRG	2 cut(s)	241, 824
AoxI	GGCC	3 cut(s)	13, 199, 595
ApeKI	GCWGC	6 cut(s)	4, 92, 380, 611, 620, 674
ApoI	RAATTY	1 cut(s)	407
AspLEI	GCGC	1 cut(s)	224
AspS9I	GGNCC	2 cut(s)	13, 100
AsuHPI	GGTGA	5 cut(s)	71, 127, 155, 712, 807
AvaI	CYCGRG	2 cut(s)	241, 824
AvaII	GGWCC	1 cut(s)	100
BaeGI	GKGCMC	1 cut(s)	288
Bbv12I	GWGCWC	1 cut(s)	775
BbvI	GCAGC	5 cut(s)	79, 392, 598, 632, 661
BccI	CCATC	2 cut(s)	131, 140
BciT130I	CCWGG	3 cut(s)	17, 162, 543
BcoDI	GTCTC	1 cut(s)	25
BfaI	CTAG	2 cut(s)	261, 719
BfmI	CTRYAG	2 cut(s)	93, 675
BglII	AGATCT	1 cut(s)	497
BisI	GCNGC	6 cut(s)	5, 93, 381, 612, 621, 675
BlsI	GCNGC	6 cut(s)	6, 94, 382, 613, 622, 676
BmcAI	AGTACT	1 cut(s)	710
Bme1390I	CCNGG	3 cut(s)	17, 162, 543
Bme18I	GGWCC	1 cut(s)	100
BmeT110I	CYCGRG	2 cut(s)	241, 824
BmgBI	CACGTC	1 cut(s)	37
BmgT120I	GGNCC	2 cut(s)	13, 100
BmiI	GGNNCC	1 cut(s)	102
BmrFI	CCNGG	3 cut(s)	17, 162, 543
BmsI	GCATC	3 cut(s)	337, 592, 614
BplI	GAGNNNNNCTC	2 cut(s)	487, 519
BpmI	CTGGAG	1 cut(s)	276
BsaBI	GATNNNNATC	2 cut(s)	756, 790
BsaI	GGTCTC	1 cut(s)	25
BsaJI	CCNNGG	3 cut(s)	160, 196, 571
Bsc4I	CCNNNNNNNGG	1 cut(s)	855
Bse118I	RCCGGY	1 cut(s)	614
Bse8I	GATNNNNATC	2 cut(s)	756, 790
BseBI	CCWGG	3 cut(s)	17, 162, 543
BseDI	CCNNGG	3 cut(s)	160, 196, 571
BseGI	GGATG	2 cut(s)	325, 757
BseJI	GATNNNNATC	2 cut(s)	756, 790
BseLI	CCNNNNNNNGG	1 cut(s)	855
BseMII	CTCAG	1 cut(s)	63
BseRI	GAGGAG	2 cut(s)	216, 792
BseSI	GKGCMC	1 cut(s)	288
BseXI	GCAGC	5 cut(s)	79, 392, 598, 632, 661
BseYI	CCCAGC	1 cut(s)	506
BsgI	GTGCAG	2 cut(s)	639, 852
BshFI	GGCC	3 cut(s)	15, 201, 597
BsiHKAI	GWGCWC	1 cut(s)	775
BsiHKCI	CYCGRG	2 cut(s)	241, 824
BsiSI	CCGG	1 cut(s)	615
BslI	CCNNNNNNNGG	1 cut(s)	855
BsmAI	GTCTC	1 cut(s)	25
BsnI	GGCC	3 cut(s)	15, 201, 597
Bso31I	GGTCTC	1 cut(s)	25
BsoBI	CYCGRG	2 cut(s)	241, 824
Bsp1286I	GDGCHC	2 cut(s)	288, 775
Bsp143I	GATC	3 cut(s)	497, 757, 858
BspACI	CCGC	3 cut(s)	11, 193, 783
BspANI	GGCC	3 cut(s)	15, 201, 597
BspCNI	CTCAG	1 cut(s)	64
BspHI	TCATGA	1 cut(s)	552
BspLI	GGNNCC	1 cut(s)	102
BspMAI	CTGCAG	2 cut(s)	97, 679
BspPI	GGATC	2 cut(s)	765, 866
BspTNI	GGTCTC	1 cut(s)	25
BsrFI	RCCGGY	1 cut(s)	614
BssAI	RCCGGY	1 cut(s)	614
BssECI	CCNNGG	3 cut(s)	160, 196, 571
BssMI	GATC	3 cut(s)	497, 757, 858
BssT1I	CCWWGG	2 cut(s)	196, 571
Bst2UI	CCWGG	3 cut(s)	17, 162, 543
Bst4CI	ACNGT	1 cut(s)	560
BstAPI	GCANNNNNTGC	1 cut(s)	611
BstC8I	GCNNGC	5 cut(s)	9, 13, 512, 516, 585
BstDEI	CTNAG	1 cut(s)	72
BstEII	GGTNACC	2 cut(s)	59, 133
BstF5I	GGATG	2 cut(s)	325, 757
BstHHI	GCGC	1 cut(s)	224
BstKTI	GATC	3 cut(s)	500, 760, 861
BstMAI	GTCTC	1 cut(s)	25
BstMBI	GATC	3 cut(s)	497, 757, 858
BstMWI	GCNNNNNNNGC	5 cut(s)	266, 524, 611, 617, 620
BstNI	CCWGG	3 cut(s)	17, 162, 543
BstPI	GGTNACC	2 cut(s)	59, 133
BstSCI	CCNGG	3 cut(s)	15, 160, 541
BstSFI	CTRYAG	2 cut(s)	93, 675
BstSLI	GKGCMC	1 cut(s)	288
BstV1I	GCAGC	5 cut(s)	79, 392, 598, 632, 661
BstX2I	RGATCY	3 cut(s)	497, 757, 858
BstXI	CCANNNNNNTGG	1 cut(s)	130
BstYI	RGATCY	3 cut(s)	497, 757, 858
BsuRI	GGCC	3 cut(s)	15, 201, 597
BtrI	CACGTC	1 cut(s)	37
BtsCI	GGATG	2 cut(s)	325, 757
BtsIMutI	CAGTG	1 cut(s)	69
Cac8I	GCNNGC	5 cut(s)	9, 13, 512, 516, 585
CaiI	CAGNNNCTG	1 cut(s)	356
CciI	TCATGA	1 cut(s)	552
CfoI	GCGC	1 cut(s)	224
Cfr10I	RCCGGY	1 cut(s)	614
Cfr13I	GGNCC	2 cut(s)	13, 100
Csp6I	GTAC	2 cut(s)	238, 709
CspCI	CAANNNNNGTGG	2 cut(s)	34, 69
CviAII	CATG	3 cut(s)	215, 492, 553
CviQI	GTAC	2 cut(s)	238, 709
DdeI	CTNAG	1 cut(s)	72
DpnI	GATC	3 cut(s)	499, 759, 860
DpnII	GATC	3 cut(s)	497, 757, 858
DraI	TTTAAA	1 cut(s)	472
EaeI	YGGCCR	1 cut(s)	595
EciI	GGCGGA	1 cut(s)	182
Eco130I	CCWWGG	2 cut(s)	196, 571
Eco147I	AGGCCT	1 cut(s)	201
Eco31I	GGTCTC	1 cut(s)	25
Eco47I	GGWCC	1 cut(s)	100
Eco57I	CTGAAG	1 cut(s)	108
Eco88I	CYCGRG	2 cut(s)	241, 824
Eco91I	GGTNACC	2 cut(s)	59, 133
EcoO109I	RGGNCCY	1 cut(s)	100
EcoO65I	GGTNACC	2 cut(s)	59, 133
EcoRI	GAATTC	1 cut(s)	407
EcoRII	CCWGG	3 cut(s)	15, 160, 541
EcoT14I	CCWWGG	2 cut(s)	196, 571
EcoT22I	ATGCAT	1 cut(s)	607
ErhI	CCWWGG	2 cut(s)	196, 571
FaeI	CATG	3 cut(s)	218, 495, 556
FaiI	YATR	4 cut(s)	216, 434, 493, 554
FalI	AAGNNNNNCTT	2 cut(s)	407, 439
FatI	CATG	3 cut(s)	214, 491, 552
FauI	CCCGC	1 cut(s)	4
Fnu4HI	GCNGC	6 cut(s)	5, 93, 381, 612, 621, 675
FokI	GGATG	2 cut(s)	332, 764
Fsp4HI	GCNGC	6 cut(s)	5, 93, 381, 612, 621, 675
FspBI	CTAG	2 cut(s)	261, 719
GlaI	GCGC	1 cut(s)	223
GluI	GCNGC	6 cut(s)	5, 93, 381, 612, 621, 675
GsaI	CCCAGC	1 cut(s)	510
GsuI	CTGGAG	1 cut(s)	276
HaeIII	GGCC	3 cut(s)	15, 201, 597
HapII	CCGG	1 cut(s)	615
HhaI	GCGC	1 cut(s)	224
Hin1II	CATG	3 cut(s)	218, 495, 556
Hin6I	GCGC	1 cut(s)	222
HinP1I	GCGC	1 cut(s)	222
HincII	GTYRAC	1 cut(s)	563
HindII	GTYRAC	1 cut(s)	563
HinfI	GANTC	5 cut(s)	155, 439, 577, 662, 827
HpaII	CCGG	1 cut(s)	615
HphI	GGTGA	5 cut(s)	71, 127, 155, 712, 807
Hpy166II	GTNNAC	2 cut(s)	365, 563
Hpy188I	TCNGA	6 cut(s)	88, 429, 688, 716, 770, 832
Hpy188III	TCNNGA	5 cut(s)	329, 553, 761, 824, 875
Hpy8I	GTNNAC	2 cut(s)	365, 563
Hpy99I	CGWCG	1 cut(s)	630
HpyAV	CCTTC	4 cut(s)	87, 310, 394, 453
HpyCH4III	ACNGT	1 cut(s)	560
HpyCH4IV	ACGT	1 cut(s)	36
HpyCH4V	TGCA	8 cut(s)	95, 350, 380, 587, 605, 620, 677, 869
HpyF10VI	GCNNNNNNNGC	5 cut(s)	266, 524, 611, 617, 620
HpyF3I	CTNAG	1 cut(s)	72
HpySE526I	ACGT	1 cut(s)	36
Hsp92II	CATG	3 cut(s)	218, 495, 556
HspAI	GCGC	1 cut(s)	222
Kzo9I	GATC	3 cut(s)	497, 757, 858
LmnI	GCTCC	3 cut(s)	229, 257, 671
Lsp1109I	GCAGC	5 cut(s)	79, 392, 598, 632, 661
LweI	GCATC	3 cut(s)	337, 592, 614
MaeI	CTAG	2 cut(s)	261, 719
MaeII	ACGT	1 cut(s)	36
MaeIII	GTNAC	4 cut(s)	59, 133, 631, 796
MalI	GATC	3 cut(s)	499, 759, 860
MboI	GATC	3 cut(s)	497, 757, 858
MboII	GAAGA	2 cut(s)	655, 658
MfeI	CAATTG	2 cut(s)	666, 853
MflI	RGATCY	3 cut(s)	497, 757, 858
MhlI	GDGCHC	2 cut(s)	288, 775
MluCI	AATT	4 cut(s)	307, 407, 666, 853
MlyI	GAGTC	2 cut(s)	149, 836
MmeI	TCCRAC	1 cut(s)	739
Mph1103I	ATGCAT	1 cut(s)	607
MseI	TTAA	1 cut(s)	471
MspA1I	CMGCKG	1 cut(s)	510
MspI	CCGG	1 cut(s)	615
MspR9I	CCNGG	3 cut(s)	17, 162, 543
MunI	CAATTG	2 cut(s)	666, 853
MvaI	CCWGG	3 cut(s)	17, 162, 543
MwoI	GCNNNNNNNGC	5 cut(s)	266, 524, 611, 617, 620
NdeII	GATC	3 cut(s)	497, 757, 858
NlaIII	CATG	3 cut(s)	218, 495, 556
NlaIV	GGNNCC	1 cut(s)	102
NmeAIII	GCCGAG	1 cut(s)	623
NmuCI	GTSAC	3 cut(s)	59, 133, 631
NsiI	ATGCAT	1 cut(s)	607
PaeR7I	CTCGAG	1 cut(s)	824
PagI	TCATGA	1 cut(s)	552
PceI	AGGCCT	1 cut(s)	201
PfeI	GAWTC	3 cut(s)	439, 577, 662
PfoI	TCCNGGA	1 cut(s)	541
PkrI	GCNGC	6 cut(s)	6, 94, 382, 613, 622, 676
PleI	GAGTC	2 cut(s)	149, 835
PpsI	GAGTC	2 cut(s)	149, 835
PpuMI	RGGWCCY	1 cut(s)	100
Psp5II	RGGWCCY	1 cut(s)	100
Psp6I	CCWGG	3 cut(s)	15, 160, 541
PspEI	GGTNACC	2 cut(s)	59, 133
PspFI	CCCAGC	1 cut(s)	506
PspGI	CCWGG	3 cut(s)	15, 160, 541
PspN4I	GGNNCC	1 cut(s)	102
PspPI	GGNCC	2 cut(s)	13, 100
PspPPI	RGGWCCY	1 cut(s)	100
PstI	CTGCAG	2 cut(s)	97, 679
PstNI	CAGNNNCTG	1 cut(s)	356
PsuI	RGATCY	3 cut(s)	497, 757, 858
PvuII	CAGCTG	1 cut(s)	510
RsaI	GTAC	2 cut(s)	239, 710
RsaNI	GTAC	2 cut(s)	238, 709
SaqAI	TTAA	1 cut(s)	471
SatI	GCNGC	6 cut(s)	5, 93, 381, 612, 621, 675
Sau3AI	GATC	3 cut(s)	497, 757, 858
Sau96I	GGNCC	2 cut(s)	13, 100
ScaI	AGTACT	1 cut(s)	710
SchI	GAGTC	2 cut(s)	149, 836
ScrFI	CCNGG	3 cut(s)	17, 162, 543
SduI	GDGCHC	2 cut(s)	288, 775
SfaNI	GCATC	3 cut(s)	337, 592, 614
SfcI	CTRYAG	2 cut(s)	93, 675
Sfr274I	CTCGAG	1 cut(s)	824
SinI	GGWCC	1 cut(s)	100
SlaI	CTCGAG	1 cut(s)	824
SmlI	CTYRAG	1 cut(s)	824
SmoI	CTYRAG	1 cut(s)	824
Sse9I	AATT	4 cut(s)	307, 407, 666, 853
SseBI	AGGCCT	1 cut(s)	201
SsiI	CCGC	3 cut(s)	11, 193, 783
SspMI	CTAG	2 cut(s)	261, 719
StuI	AGGCCT	1 cut(s)	201
StyD4I	CCNGG	3 cut(s)	15, 160, 541
StyI	CCWWGG	2 cut(s)	196, 571
TaaI	ACNGT	1 cut(s)	560
TaiI	ACGT	1 cut(s)	39
TaqI	TCGA	2 cut(s)	777, 825
TasI	AATT	4 cut(s)	307, 407, 666, 853
TatI	WGTACW	2 cut(s)	237, 708
TfiI	GAWTC	3 cut(s)	439, 577, 662
Tru1I	TTAA	1 cut(s)	471
Tru9I	TTAA	1 cut(s)	471
TscAI	CASTG	1 cut(s)	76
TseFI	GTSAC	3 cut(s)	59, 133, 631
TseI	GCWGC	6 cut(s)	4, 92, 380, 611, 620, 674
Tsp45I	GTSAC	3 cut(s)	59, 133, 631
TspDTI	ATGAA	4 cut(s)	336, 435, 541, 569
TspGWI	ACGGA	1 cut(s)	764
TspRI	CASTG	1 cut(s)	76
VpaK11BI	GGWCC	1 cut(s)	100
XapI	RAATTY	1 cut(s)	407
XhoI	CTCGAG	1 cut(s)	824
XspI	CTAG	2 cut(s)	261, 719
ZrmI	AGTACT	1 cut(s)	710
Zsp2I	ATGCAT	1 cut(s)	607

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.