Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001527

Physical Location & Seq

Genomic Coordinates Reverse (-)

132578 .. 134455

Gene Structure 1878 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G01250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGTTGAGTCAAAGGTTGTAGTTCCAGAGTCGGTGTTGAAGAAGAGGAAGAGAGAGGAGGAATGGGCTTTGGAGAAGAAGCAGAATGTTGAAGCCGCCAAGAAGAAGAACGCCGAGAACAGGAAGCTTATCTTCAAAAGAGCCGAGCAATACTCCAAGGAATATGCCGAGAAGGAGAAGGAGTTGATCTCGTTGAAACGCGAGGCCAAGCTTAAGGGAGGTTTCTATGTTGACCCTGAAGCTAAGCTCTTGTTCATCATCCGTATCCGTGGTATCAATGCCATTGACCCTAAGACTAAGAAGATTCTCCAGCTCTTGCGTTTGAGACAGATTTTCAATGGTGTTTTCCTTAAAGTCAACAAGGCTACGATGAACATGCTTCGCCGTGTTGAGCCCTATGTCACTTACGGATTCCCTAACTTGAAGAGTGTCAAGGAATTGATCTACAAGAGAGGTTACGGAAAGCTTAACCACCAGAGGATAGCTTTGACTGACAACTCTATTGTAGAGCAGGCTCTTGGAAAGCATGGTATCATTTGCACTGAGGATTTGATCCACGAGATTCTAACAGTAGGACCTCATTTCAAGGAAGCCAACAACTTCCTTTGGCCATTCCAGCTTAAGGCACCACTAGGTGGCCTCAAGAAGAAGAGAAATCACTACGTGGAAGGTGGTGATGCCGGAAACCGTGAGAACTTCATCAATGAGCTTATCAGGAGGATGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000463 GO:0000470 GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0030312 GO:0031090 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0097159 GO:0098588 GO:0098805 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L30 Ribosomal_L30_N

Protein Analysis

242

Amino Acids

28.17

Weight (kDa)

9.93

Isoelectric Point (pI)

37.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L30_N	PF08079	8 - 79	3.5e-26	Ribosomal L30 N-terminal domain
Ribosomal_L30	PF00327	84 - 134	4.9e-18	Ribosomal protein L30p/L7e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0001527)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01250 AT2G01250 AT2G44120 AT2G44120 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580
fragaria_vesca	FvH4_6g37170 FvH4_6g37320 FvH4_6g37320
malus_domestica	MD09G1160400.v1.1 MD16G1246400.v1.1 MD17G1146200.v1.1
prunus_persica	Prupe.1G073100_v2.0.a1 Prupe.3G019000_v2.0.a1
pyrus_communis	pycom09g07900 pycom16g20690
rosa_chinensis	RchiOBHm_Chr2g0149791 RchiOBHm_Chr2g0150141
rosa_laevigata	RLG00000020445 RLG00000020470 RLG00000034320
rosa_multiflora	Rmu_sc0002002.1_g000018 Rmu_sc0009445.1_g000002 Rmu_sc0018143.1_g000004 Rmu_sc0019102.1_g000006 Rmu_ssc0000020.1_g000014
rosa_roxburghii	Rroxscaffold_2G00097410 Rroxscaffold_2G00097690
rosa_rugosa	Rorug02G0416300 Rorug02G0416400 Rorug02G0416400 Rorug02G0416500 Rorug02G0419400 Rorug04G0013800
rosa_samantha	Rh2AG478100 Rh2BG487200 Rh2BG490700 Rh2CG461300 Rh2CG464300 Rh2DG496300 Rh2DG499500 Rh4BG089300
rosa_wichuraiana	Rw2G038780 Rw2G039030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	625
AccB7I	CCANNNNNTGG	1 cut(s)	635
AccII	CGCG	1 cut(s)	201
AciI	CCGC	1 cut(s)	96
AclWI	GGATC	1 cut(s)	547
AcoI	YGGCCR	1 cut(s)	608
AcuI	CTGAAG	1 cut(s)	258
AdeI	CACNNNGTG	2 cut(s)	635, 664
AfiI	CCNNNNNNNGG	3 cut(s)	120, 622, 635
AflII	CTTAAG	2 cut(s)	212, 620
AgsI	TTSAA	7 cut(s)	40, 92, 136, 196, 337, 424, 586
AluBI	AGCT	9 cut(s)	127, 211, 242, 247, 313, 466, 485, 619, 709
AluI	AGCT	9 cut(s)	127, 211, 242, 247, 313, 466, 485, 619, 709
Alw26I	GTCTC	1 cut(s)	319
AlwI	GGATC	1 cut(s)	547
AoxI	GGCC	3 cut(s)	204, 608, 637
AspS9I	GGNCC	1 cut(s)	575
AsuHPI	GGTGA	1 cut(s)	686
AvaII	GGWCC	1 cut(s)	575
BalI	TGGCCA	1 cut(s)	610
BanI	GGYRCC	1 cut(s)	625
BanII	GRGCYC	1 cut(s)	396
BauI	CACGAG	1 cut(s)	557
BceAI	ACGGC	1 cut(s)	369
BcgI	CGANNNNNNTGC	2 cut(s)	358, 392
BciVI	GTATCC	1 cut(s)	275
BcoDI	GTCTC	1 cut(s)	319
BfaI	CTAG	1 cut(s)	632
BfrI	CTTAAG	2 cut(s)	212, 620
BfuI	GTATCC	1 cut(s)	275
BisI	GCNGC	1 cut(s)	96
BlpI	GCTNAGC	1 cut(s)	243
BlsI	GCNGC	1 cut(s)	97
Bme18I	GGWCC	1 cut(s)	575
BmgT120I	GGNCC	1 cut(s)	575
BmiI	GGNNCC	1 cut(s)	627
BmsI	GCATC	1 cut(s)	667
BplI	GAGNNNNNCTC	4 cut(s)	137, 169, 173, 205
BpmI	CTGGAG	1 cut(s)	293
Bpu1102I	GCTNAGC	1 cut(s)	243
BpuEI	CTTGAG	1 cut(s)	626
BsaAI	YACGTR	1 cut(s)	664
BsaJI	CCNNGG	2 cut(s)	156, 268
BsaXI	ACNNNNNCTCC	2 cut(s)	167, 197
Bsc4I	CCNNNNNNNGG	3 cut(s)	120, 622, 635
BseDI	CCNNGG	2 cut(s)	156, 268
BseGI	GGATG	2 cut(s)	258, 726
BseLI	CCNNNNNNNGG	3 cut(s)	120, 622, 635
BseMII	CTCAG	1 cut(s)	534
BseRI	GAGGAG	1 cut(s)	71
Bsh1236I	CGCG	1 cut(s)	201
BshFI	GGCC	3 cut(s)	206, 610, 639
BshNI	GGYRCC	1 cut(s)	625
BsiSI	CCGG	1 cut(s)	681
BslI	CCNNNNNNNGG	3 cut(s)	120, 622, 635
BsmAI	GTCTC	1 cut(s)	319
BsnI	GGCC	3 cut(s)	206, 610, 639
Bsp1286I	GDGCHC	1 cut(s)	396
Bsp143I	GATC	3 cut(s)	186, 441, 552
Bsp1720I	GCTNAGC	1 cut(s)	243
BspACI	CCGC	1 cut(s)	96
BspANI	GGCC	3 cut(s)	206, 610, 639
BspCNI	CTCAG	1 cut(s)	535
BspFNI	CGCG	1 cut(s)	201
BspLI	GGNNCC	1 cut(s)	627
BspPI	GGATC	1 cut(s)	547
BspT107I	GGYRCC	1 cut(s)	625
BspTI	CTTAAG	2 cut(s)	212, 620
BssECI	CCNNGG	2 cut(s)	156, 268
BssMI	GATC	3 cut(s)	186, 441, 552
BssSI	CACGAG	1 cut(s)	557
BssT1I	CCWWGG	1 cut(s)	156
Bst2BI	CACGAG	1 cut(s)	557
Bst4CI	ACNGT	2 cut(s)	571, 689
Bst6I	CTCTTC	4 cut(s)	38, 44, 419, 644
BstAFI	CTTAAG	2 cut(s)	212, 620
BstBAI	YACGTR	1 cut(s)	664
BstC8I	GCNNGC	1 cut(s)	513
BstDEI	CTNAG	4 cut(s)	243, 291, 297, 543
BstDSI	CCRYGG	1 cut(s)	268
BstF5I	GGATG	2 cut(s)	258, 726
BstFNI	CGCG	1 cut(s)	201
BstKTI	GATC	3 cut(s)	189, 444, 555
BstMAI	GTCTC	1 cut(s)	319
BstMBI	GATC	3 cut(s)	186, 441, 552
BstMWI	GCNNNNNNNGC	1 cut(s)	616
BstNSI	RCATGY	1 cut(s)	379
BstUI	CGCG	1 cut(s)	201
BsuI	GTATCC	1 cut(s)	275
BsuRI	GGCC	3 cut(s)	206, 610, 639
BtgI	CCRYGG	1 cut(s)	268
BtsCI	GGATG	2 cut(s)	258, 726
BtsIMutI	CAGTG	1 cut(s)	540
Cac8I	GCNNGC	1 cut(s)	513
Cfr13I	GGNCC	1 cut(s)	575
CviAII	CATG	2 cut(s)	376, 527
DdeI	CTNAG	4 cut(s)	243, 291, 297, 543
DpnI	GATC	3 cut(s)	188, 443, 554
DpnII	GATC	3 cut(s)	186, 441, 552
DraIII	CACNNNGTG	2 cut(s)	635, 664
EaeI	YGGCCR	1 cut(s)	608
Eam1104I	CTCTTC	4 cut(s)	38, 44, 419, 644
EarI	CTCTTC	4 cut(s)	38, 44, 419, 644
Eco130I	CCWWGG	1 cut(s)	156
Eco24I	GRGCYC	1 cut(s)	396
Eco47I	GGWCC	1 cut(s)	575
Eco57I	CTGAAG	1 cut(s)	258
EcoO109I	RGGNCCY	1 cut(s)	575
EcoT14I	CCWWGG	1 cut(s)	156
EcoT38I	GRGCYC	1 cut(s)	396
ErhI	CCWWGG	1 cut(s)	156
FaeI	CATG	2 cut(s)	379, 530
FaiI	YATR	5 cut(s)	165, 228, 377, 399, 528
FalI	AAGNNNNNCTT	2 cut(s)	116, 148
FatI	CATG	2 cut(s)	375, 526
Fnu4HI	GCNGC	1 cut(s)	96
FokI	GGATG	1 cut(s)	245
FriOI	GRGCYC	1 cut(s)	396
Fsp4HI	GCNGC	1 cut(s)	96
FspBI	CTAG	1 cut(s)	632
GluI	GCNGC	1 cut(s)	96
GsuI	CTGGAG	1 cut(s)	293
HaeIII	GGCC	3 cut(s)	206, 610, 639
HapII	CCGG	1 cut(s)	681
Hin1II	CATG	2 cut(s)	379, 530
HincII	GTYRAC	2 cut(s)	232, 358
HindII	GTYRAC	2 cut(s)	232, 358
HindIII	AAGCTT	3 cut(s)	125, 209, 464
HinfI	GANTC	5 cut(s)	8, 29, 304, 411, 562
HpaII	CCGG	1 cut(s)	681
HphI	GGTGA	1 cut(s)	686
Hpy166II	GTNNAC	2 cut(s)	232, 358
Hpy188III	TCNNGA	3 cut(s)	26, 643, 715
Hpy8I	GTNNAC	2 cut(s)	232, 358
HpyAV	CCTTC	3 cut(s)	166, 172, 662
HpyCH4III	ACNGT	2 cut(s)	571, 689
HpyCH4IV	ACGT	1 cut(s)	663
HpyCH4V	TGCA	1 cut(s)	540
HpyF10VI	GCNNNNNNNGC	1 cut(s)	616
HpyF3I	CTNAG	4 cut(s)	243, 291, 297, 543
HpySE526I	ACGT	1 cut(s)	663
Hsp92II	CATG	2 cut(s)	379, 530
Kzo9I	GATC	3 cut(s)	186, 441, 552
LpnPI	CCDG	9 cut(s)	39, 106, 249, 323, 488, 497, 629, 694, 700
LweI	GCATC	1 cut(s)	667
MaeI	CTAG	1 cut(s)	632
MaeII	ACGT	1 cut(s)	663
MaeIII	GTNAC	2 cut(s)	400, 455
MalI	GATC	3 cut(s)	188, 443, 554
MboI	GATC	3 cut(s)	186, 441, 552
MhlI	GDGCHC	1 cut(s)	396
MlsI	TGGCCA	1 cut(s)	610
MluCI	AATT	2 cut(s)	437, 724
MluNI	TGGCCA	1 cut(s)	610
MlyI	GAGTC	2 cut(s)	17, 38
Mox20I	TGGCCA	1 cut(s)	610
MscI	TGGCCA	1 cut(s)	610
MseI	TTAA	4 cut(s)	213, 351, 468, 621
Msp20I	TGGCCA	1 cut(s)	610
MspCI	CTTAAG	2 cut(s)	212, 620
MspI	CCGG	1 cut(s)	681
MvnI	CGCG	1 cut(s)	201
MwoI	GCNNNNNNNGC	1 cut(s)	616
NdeII	GATC	3 cut(s)	186, 441, 552
NlaIII	CATG	2 cut(s)	379, 530
NlaIV	GGNNCC	1 cut(s)	627
NmeAIII	GCCGAG	3 cut(s)	139, 169, 193
NmuCI	GTSAC	1 cut(s)	400
NspI	RCATGY	1 cut(s)	379
PfeI	GAWTC	3 cut(s)	304, 411, 562
PflMI	CCANNNNNTGG	1 cut(s)	635
PkrI	GCNGC	1 cut(s)	97
PleI	GAGTC	2 cut(s)	16, 37
PpsI	GAGTC	2 cut(s)	16, 37
Ppu21I	YACGTR	1 cut(s)	664
PpuMI	RGGWCCY	1 cut(s)	575
Psp5II	RGGWCCY	1 cut(s)	575
PspN4I	GGNNCC	1 cut(s)	627
PspPI	GGNCC	1 cut(s)	575
PspPPI	RGGWCCY	1 cut(s)	575
SaqAI	TTAA	4 cut(s)	213, 351, 468, 621
SatI	GCNGC	1 cut(s)	96
Sau3AI	GATC	3 cut(s)	186, 441, 552
Sau96I	GGNCC	1 cut(s)	575
SchI	GAGTC	2 cut(s)	17, 38
SduI	GDGCHC	1 cut(s)	396
SfaNI	GCATC	1 cut(s)	667
SinI	GGWCC	1 cut(s)	575
SmlI	CTYRAG	3 cut(s)	212, 620, 641
SmoI	CTYRAG	3 cut(s)	212, 620, 641
Sse9I	AATT	2 cut(s)	437, 724
SsiI	CCGC	1 cut(s)	96
SspMI	CTAG	1 cut(s)	632
StyI	CCWWGG	1 cut(s)	156
TaaI	ACNGT	2 cut(s)	571, 689
TaiI	ACGT	1 cut(s)	666
TasI	AATT	2 cut(s)	437, 724
TauI	GCSGC	1 cut(s)	98
TfiI	GAWTC	3 cut(s)	304, 411, 562
Tru1I	TTAA	4 cut(s)	213, 351, 468, 621
Tru9I	TTAA	4 cut(s)	213, 351, 468, 621
TscAI	CASTG	1 cut(s)	547
TseFI	GTSAC	1 cut(s)	400
Tsp45I	GTSAC	1 cut(s)	400
TspDTI	ATGAA	3 cut(s)	244, 386, 688
TspGWI	ACGGA	4 cut(s)	251, 257, 423, 474
TspRI	CASTG	1 cut(s)	547
Van91I	CCANNNNNTGG	1 cut(s)	635
Vha464I	CTTAAG	2 cut(s)	212, 620
VpaK11BI	GGWCC	1 cut(s)	575
XceI	RCATGY	1 cut(s)	379
XspI	CTAG	1 cut(s)	632

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.