Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001527

Physical Location & Seq

Genomic Coordinates Forward (+)

18897549 .. 18899682

Gene Structure 2134 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00097690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGGTGAAGCAGTCAAGGTTGTGGTTCCAGAGTCTGTCCTAAAGAAGAGGAAGAGAGAGGAGGAATGGGCTTTGGCAAAGAAGCAGGGGCTTGAGGCCGCCAAGAAGAAGAATGCTGAAAACAGGAAGCTTATTTACAACAAATCCAAACAGTACACCAAGGAGTACGCAGAGAAGGACAATGAGTTGGTCCGGTTGAAGCGTGAAGCAAGGCTGAAAGGAGGATTCTATGTCGAGCCAGAGTCTAAGCTCTTGTTTATCATTCGTATCCGCGGTATCAATGCCATTGATCCAAAGACAAAGAAGATCTTGCAGCTTTTGCGTTTGAGACAGATATTCAATGGTGTCTTCCTGAAAGTAAACAAGGCCACCTTGAACATGCTTCACAGGGTCGAGCCATATGTCACTTATGGATACCCCAACTTGAAGAGTGTCAAGGAATTGATTTACAAGAGGGGTTATGGCAAGTTGAACAAGCAAAGAATTGCCTTGACTGATAACTCTGTTGTTGAACAGGGTTTGGGCAAGCATGGCATTATCTGCACTGAGGATCTTATTCACGAGATCTTGACAGTTGGACCTCATTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L30 Ribosomal_L30_N

Protein Analysis

196

Amino Acids

22.67

Weight (kDa)

9.93

Isoelectric Point (pI)

35.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L30_N	PF08079	9 - 80	2.8e-22	Ribosomal L30 N-terminal domain
Ribosomal_L30	PF00327	85 - 135	1e-17	Ribosomal protein L30p/L7e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001527)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01250 AT2G01250 AT2G44120 AT2G44120 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580
fragaria_vesca	FvH4_6g37170 FvH4_6g37320 FvH4_6g37320
malus_domestica	MD09G1160400.v1.1 MD16G1246400.v1.1 MD17G1146200.v1.1
prunus_persica	Prupe.1G073100_v2.0.a1 Prupe.3G019000_v2.0.a1
pyrus_communis	pycom09g07900 pycom16g20690
rosa_chinensis	RchiOBHm_Chr2g0149791 RchiOBHm_Chr2g0150141
rosa_laevigata	RLG00000020445 RLG00000020470 RLG00000034320
rosa_multiflora	Rmu_sc0002002.1_g000018 Rmu_sc0009445.1_g000002 Rmu_sc0018143.1_g000004 Rmu_sc0019102.1_g000006 Rmu_ssc0000020.1_g000014
rosa_roxburghii	Rroxscaffold_2G00097410 Rroxscaffold_2G00097690
rosa_rugosa	Rorug02G0416300 Rorug02G0416400 Rorug02G0416400 Rorug02G0416500 Rorug02G0419400 Rorug04G0013800
rosa_samantha	Rh2AG478100 Rh2BG487200 Rh2BG490700 Rh2CG461300 Rh2CG464300 Rh2DG496300 Rh2DG499500 Rh4BG089300
rosa_wichuraiana	Rw2G038780 Rw2G039030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	273
AciI	CCGC	3 cut(s)	99, 271, 273
AclWI	GGATC	2 cut(s)	284, 558
AfaI	GTAC	2 cut(s)	155, 167
AgsI	TTSAA	6 cut(s)	199, 340, 376, 427, 472, 512
AluBI	AGCT	3 cut(s)	130, 250, 316
AluI	AGCT	3 cut(s)	130, 250, 316
Alw26I	GTCTC	1 cut(s)	322
AlwI	GGATC	2 cut(s)	284, 558
AlwNI	CAGNNNCTG	1 cut(s)	35
AoxI	GGCC	2 cut(s)	96, 366
ApeKI	GCWGC	1 cut(s)	313
AspS9I	GGNCC	2 cut(s)	190, 578
AsuHPI	GGTGA	1 cut(s)	17
AvaII	GGWCC	2 cut(s)	190, 578
BarI	GAAGNNNNNNTAC	2 cut(s)	119, 151
BauI	CACGAG	1 cut(s)	560
BbsI	GAAGAC	1 cut(s)	340
BbvI	GCAGC	1 cut(s)	325
BciVI	GTATCC	2 cut(s)	278, 407
BcoDI	GTCTC	1 cut(s)	322
BfuI	GTATCC	2 cut(s)	278, 407
BglII	AGATCT	2 cut(s)	306, 564
BisI	GCNGC	2 cut(s)	99, 314
BlsI	GCNGC	2 cut(s)	100, 315
Bme18I	GGWCC	2 cut(s)	190, 578
BmgT120I	GGNCC	2 cut(s)	190, 578
BmiI	GGNNCC	1 cut(s)	27
BpiI	GAAGAC	1 cut(s)	340
BpuEI	CTTGAG	1 cut(s)	113
BsaJI	CCNNGG	2 cut(s)	159, 271
BsaWI	WCCGGW	1 cut(s)	192
BseDI	CCNNGG	2 cut(s)	159, 271
BseMII	CTCAG	1 cut(s)	537
BseRI	GAGGAG	1 cut(s)	74
BseXI	GCAGC	1 cut(s)	325
BsgI	GTGCAG	1 cut(s)	526
Bsh1236I	CGCG	1 cut(s)	273
BshFI	GGCC	2 cut(s)	98, 368
BsiSI	CCGG	1 cut(s)	193
BsmAI	GTCTC	1 cut(s)	322
BsmI	GAATGC	1 cut(s)	118
BsnI	GGCC	2 cut(s)	98, 368
Bsp143I	GATC	4 cut(s)	289, 306, 550, 564
BspACI	CCGC	3 cut(s)	99, 271, 273
BspANI	GGCC	2 cut(s)	98, 368
BspCNI	CTCAG	1 cut(s)	538
BspFNI	CGCG	1 cut(s)	273
BspLI	GGNNCC	1 cut(s)	27
BspPI	GGATC	2 cut(s)	284, 558
BssECI	CCNNGG	2 cut(s)	159, 271
BssMI	GATC	4 cut(s)	289, 306, 550, 564
BssSI	CACGAG	1 cut(s)	560
BssT1I	CCWWGG	1 cut(s)	159
Bst2BI	CACGAG	1 cut(s)	560
Bst4CI	ACNGT	2 cut(s)	153, 574
Bst6I	CTCTTC	3 cut(s)	41, 47, 422
BstAPI	GCANNNNNTGC	2 cut(s)	319, 540
BstC8I	GCNNGC	1 cut(s)	527
BstDEI	CTNAG	2 cut(s)	246, 546
BstDSI	CCRYGG	1 cut(s)	271
BstFNI	CGCG	1 cut(s)	273
BstKTI	GATC	4 cut(s)	292, 309, 553, 567
BstMAI	GTCTC	1 cut(s)	322
BstMBI	GATC	4 cut(s)	289, 306, 550, 564
BstMWI	GCNNNNNNNGC	3 cut(s)	319, 531, 540
BstNSI	RCATGY	1 cut(s)	382
BstUI	CGCG	1 cut(s)	273
BstV1I	GCAGC	1 cut(s)	325
BstV2I	GAAGAC	1 cut(s)	340
BstX2I	RGATCY	3 cut(s)	306, 550, 564
BstYI	RGATCY	3 cut(s)	306, 550, 564
BsuI	GTATCC	2 cut(s)	278, 407
BsuRI	GGCC	2 cut(s)	98, 368
BtgI	CCRYGG	1 cut(s)	271
BtsIMutI	CAGTG	1 cut(s)	543
Cac8I	GCNNGC	1 cut(s)	527
CaiI	CAGNNNCTG	1 cut(s)	35
Cfr13I	GGNCC	2 cut(s)	190, 578
Cfr42I	CCGCGG	1 cut(s)	274
Csp6I	GTAC	2 cut(s)	154, 166
CviAII	CATG	2 cut(s)	379, 530
CviQI	GTAC	2 cut(s)	154, 166
DdeI	CTNAG	2 cut(s)	246, 546
DpnI	GATC	4 cut(s)	291, 308, 552, 566
DpnII	GATC	4 cut(s)	289, 306, 550, 564
Eam1104I	CTCTTC	3 cut(s)	41, 47, 422
EarI	CTCTTC	3 cut(s)	41, 47, 422
Eco130I	CCWWGG	1 cut(s)	159
Eco47I	GGWCC	2 cut(s)	190, 578
EcoT14I	CCWWGG	1 cut(s)	159
ErhI	CCWWGG	1 cut(s)	159
FaeI	CATG	2 cut(s)	382, 533
FaiI	YATR	7 cut(s)	231, 380, 400, 402, 411, 462, 531
FalI	AAGNNNNNCTT	4 cut(s)	293, 325, 356, 388
FatI	CATG	2 cut(s)	378, 529
FauNDI	CATATG	1 cut(s)	400
Fnu4HI	GCNGC	2 cut(s)	99, 314
Fsp4HI	GCNGC	2 cut(s)	99, 314
GluI	GCNGC	2 cut(s)	99, 314
HaeIII	GGCC	2 cut(s)	98, 368
HapII	CCGG	1 cut(s)	193
Hin1II	CATG	2 cut(s)	382, 533
HindIII	AAGCTT	1 cut(s)	128
HinfI	GANTC	3 cut(s)	32, 225, 242
HpaII	CCGG	1 cut(s)	193
HphI	GGTGA	1 cut(s)	17
Hpy166II	GTNNAC	2 cut(s)	156, 361
Hpy188III	TCNNGA	4 cut(s)	29, 352, 560, 568
Hpy8I	GTNNAC	2 cut(s)	156, 361
HpyAV	CCTTC	1 cut(s)	169
HpyCH4III	ACNGT	2 cut(s)	153, 574
HpyCH4V	TGCA	2 cut(s)	313, 543
HpyF10VI	GCNNNNNNNGC	3 cut(s)	319, 531, 540
HpyF3I	CTNAG	2 cut(s)	246, 546
Hsp92II	CATG	2 cut(s)	382, 533
KspI	CCGCGG	1 cut(s)	274
Kzo9I	GATC	4 cut(s)	289, 306, 550, 564
LpnPI	CCDG	8 cut(s)	42, 71, 109, 206, 252, 365, 373, 500
Lsp1109I	GCAGC	1 cut(s)	325
MaeIII	GTNAC	1 cut(s)	403
MalI	GATC	4 cut(s)	291, 308, 552, 566
MboI	GATC	4 cut(s)	289, 306, 550, 564
MboII	GAAGA	7 cut(s)	58, 64, 118, 121, 316, 340, 439
MflI	RGATCY	3 cut(s)	306, 550, 564
MluCI	AATT	2 cut(s)	440, 483
MlyI	GAGTC	2 cut(s)	41, 251
MmeI	TCCRAC	1 cut(s)	556
MnlI	CCTC	8 cut(s)	42, 52, 55, 88, 215, 447, 541, 591
MseI	TTAA	1 cut(s)	589
MspA1I	CMGCKG	1 cut(s)	273
MspI	CCGG	1 cut(s)	193
Mva1269I	GAATGC	1 cut(s)	118
MvnI	CGCG	1 cut(s)	273
MwoI	GCNNNNNNNGC	3 cut(s)	319, 531, 540
NdeI	CATATG	1 cut(s)	400
NdeII	GATC	4 cut(s)	289, 306, 550, 564
NlaIII	CATG	2 cut(s)	382, 533
NlaIV	GGNNCC	1 cut(s)	27
NmuCI	GTSAC	1 cut(s)	403
NspI	RCATGY	1 cut(s)	382
PctI	GAATGC	1 cut(s)	118
PfeI	GAWTC	1 cut(s)	225
PkrI	GCNGC	2 cut(s)	100, 315
PleI	GAGTC	2 cut(s)	40, 250
PpsI	GAGTC	2 cut(s)	40, 250
PspN4I	GGNNCC	1 cut(s)	27
PspPI	GGNCC	2 cut(s)	190, 578
PstNI	CAGNNNCTG	1 cut(s)	35
PsuI	RGATCY	3 cut(s)	306, 550, 564
RsaI	GTAC	2 cut(s)	155, 167
RsaNI	GTAC	2 cut(s)	154, 166
SacII	CCGCGG	1 cut(s)	274
SaqAI	TTAA	1 cut(s)	589
SatI	GCNGC	2 cut(s)	99, 314
Sau3AI	GATC	4 cut(s)	289, 306, 550, 564
Sau96I	GGNCC	2 cut(s)	190, 578
SchI	GAGTC	2 cut(s)	41, 251
SetI	ASST	6 cut(s)	21, 132, 252, 318, 374, 583
Sfr303I	CCGCGG	1 cut(s)	274
SgrBI	CCGCGG	1 cut(s)	274
SinI	GGWCC	2 cut(s)	190, 578
SmlI	CTYRAG	1 cut(s)	92
SmoI	CTYRAG	1 cut(s)	92
Sse9I	AATT	2 cut(s)	440, 483
SsiI	CCGC	3 cut(s)	99, 271, 273
StyI	CCWWGG	1 cut(s)	159
TaaI	ACNGT	2 cut(s)	153, 574
TaqI	TCGA	2 cut(s)	234, 393
TasI	AATT	2 cut(s)	440, 483
TatI	WGTACW	1 cut(s)	153
TauI	GCSGC	1 cut(s)	101
TfiI	GAWTC	1 cut(s)	225
Tru1I	TTAA	1 cut(s)	589
Tru9I	TTAA	1 cut(s)	589
TscAI	CASTG	1 cut(s)	550
TseFI	GTSAC	1 cut(s)	403
TseI	GCWGC	1 cut(s)	313
Tsp45I	GTSAC	1 cut(s)	403
TspRI	CASTG	1 cut(s)	550
VpaK11BI	GGWCC	2 cut(s)	190, 578
XceI	RCATGY	1 cut(s)	382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.