Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009445.1

Orthogroup ID

OG0001527

Physical Location & Seq

Genomic Coordinates Reverse (-)

3968 .. 7030

Gene Structure 3063 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009445.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

atgttgctacttgctactaaagatgttgacgtcaaaattttacttggatggtctaaggtttggtcctccaagccgcggcgacatcagctcgagatgggtgagccagtcaaggttgtggttcccgagtctgtcctaaagaagaggaagagagaggaggaatgggctttggcaaagaagcaggggcttgaagccgccaagaagaagaatgctgagaacagaaagcttatttacaacaaatctaaacagtacaccaaggagtacgcagagaaggacaatgaattggtccggttgaagcgtgaagcaaggctgaaaggaggattctatgttgagccagagtctaagctcttgtttatcattcgtatccgtggtatcaatgccattgatccaaagacaaagaagatcttgcagcttttgcgtttgagacagatattcaatggtgtcttcctgaaagtaaacaaggccaccttgaacatgcttcacagggttgagccatatgtcacttatggataccccaacctgaagagtgtgaaggaattgatttacaagaggggttatggcaagttgaacaagcagagaatcgccttgactgataactctgttgttgaacagggtttgggcaagcatggcattatctgcacggaagatcttatacacgagatcttgacagttggacctcatttcaaggaggccaacaacttcctatggccattcaagctcaaggcaccattgggtggtcttaagaagaagaggaaccattatgttgaaggtggagatgctggaaaccgtgagaactacatcaatgagcttattaggagaatgaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L30 Ribosomal_L30_N

Protein Analysis

274

Amino Acids

31.81

Weight (kDa)

10.01

Isoelectric Point (pI)

38.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001527)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01250 AT2G01250 AT2G44120 AT2G44120 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580
fragaria_vesca	FvH4_6g37170 FvH4_6g37320 FvH4_6g37320
malus_domestica	MD09G1160400.v1.1 MD16G1246400.v1.1 MD17G1146200.v1.1
prunus_persica	Prupe.1G073100_v2.0.a1 Prupe.3G019000_v2.0.a1
pyrus_communis	pycom09g07900 pycom16g20690
rosa_chinensis	RchiOBHm_Chr2g0149791 RchiOBHm_Chr2g0150141
rosa_laevigata	RLG00000020445 RLG00000020470 RLG00000034320
rosa_multiflora	Rmu_sc0002002.1_g000018 Rmu_sc0009445.1_g000002 Rmu_sc0018143.1_g000004 Rmu_sc0019102.1_g000006 Rmu_ssc0000020.1_g000014
rosa_roxburghii	Rroxscaffold_2G00097410 Rroxscaffold_2G00097690
rosa_rugosa	Rorug02G0416300 Rorug02G0416400 Rorug02G0416400 Rorug02G0416500 Rorug02G0419400 Rorug04G0013800
rosa_samantha	Rh2AG478100 Rh2BG487200 Rh2BG490700 Rh2CG461300 Rh2CG464300 Rh2DG496300 Rh2DG499500 Rh4BG089300
rosa_wichuraiana	Rw2G038780 Rw2G039030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	33
AccB1I	GGYRCC	1 cut(s)	721
AccB7I	CCANNNNNTGG	1 cut(s)	731
AccII	CGCG	1 cut(s)	76
AciI	CCGC	3 cut(s)	74, 76, 192
AclWI	GGATC	1 cut(s)	377
AcoI	YGGCCR	1 cut(s)	704
AcsI	RAATTY	1 cut(s)	36
AcuI	CTGAAG	1 cut(s)	539
AcyI	GRCGYC	1 cut(s)	30
AfaI	GTAC	2 cut(s)	248, 260
AfiI	CCNNNNNNNGG	2 cut(s)	75, 731
AflII	CTTAAG	1 cut(s)	737
AgsI	TTSAA	9 cut(s)	188, 292, 433, 469, 565, 605, 682, 712, 764
AluBI	AGCT	6 cut(s)	88, 223, 343, 409, 715, 805
AluI	AGCT	6 cut(s)	88, 223, 343, 409, 715, 805
Alw26I	GTCTC	1 cut(s)	415
AlwI	GGATC	1 cut(s)	377
Ama87I	CYCGRG	2 cut(s)	89, 122
AoxI	GGCC	3 cut(s)	459, 687, 704
ApeKI	GCWGC	1 cut(s)	406
ApoI	RAATTY	1 cut(s)	36
AspS9I	GGNCC	3 cut(s)	63, 283, 671
AsuHPI	GGTGA	1 cut(s)	110
AvaI	CYCGRG	2 cut(s)	89, 122
AvaII	GGWCC	3 cut(s)	63, 283, 671
BalI	TGGCCA	1 cut(s)	706
BanI	GGYRCC	1 cut(s)	721
BarI	GAAGNNNNNNTAC	2 cut(s)	633, 665
BauI	CACGAG	1 cut(s)	653
BbsI	GAAGAC	1 cut(s)	433
BbvI	GCAGC	1 cut(s)	418
BccI	CCATC	2 cut(s)	42, 88
BciVI	GTATCC	2 cut(s)	371, 500
BcoDI	GTCTC	1 cut(s)	415
BfaI	CTAG	1 cut(s)	823
BfrI	CTTAAG	1 cut(s)	737
BfuI	GTATCC	2 cut(s)	371, 500
BglII	AGATCT	3 cut(s)	399, 643, 657
BisI	GCNGC	4 cut(s)	74, 77, 192, 407
BlsI	GCNGC	4 cut(s)	75, 78, 193, 408
Bme18I	GGWCC	3 cut(s)	63, 283, 671
BmeT110I	CYCGRG	2 cut(s)	89, 122
BmgT120I	GGNCC	3 cut(s)	63, 283, 671
BmiI	GGNNCC	3 cut(s)	120, 723, 752
BmsI	GCATC	1 cut(s)	763
BpiI	GAAGAC	1 cut(s)	433
BpuEI	CTTGAG	1 cut(s)	701
BsaHI	GRCGYC	1 cut(s)	30
BsaJI	CCNNGG	3 cut(s)	74, 252, 364
BsaWI	WCCGGW	1 cut(s)	285
Bsc4I	CCNNNNNNNGG	2 cut(s)	75, 731
Bse1I	ACTGG	1 cut(s)	104
BseDI	CCNNGG	3 cut(s)	74, 252, 364
BseGI	GGATG	1 cut(s)	53
BseLI	CCNNNNNNNGG	2 cut(s)	75, 731
BseMII	CTCAG	1 cut(s)	201
BseNI	ACTGG	1 cut(s)	104
BseRI	GAGGAG	1 cut(s)	167
BseXI	GCAGC	1 cut(s)	418
BsgI	GTGCAG	1 cut(s)	619
Bsh1236I	CGCG	1 cut(s)	76
BshFI	GGCC	3 cut(s)	461, 689, 706
BshNI	GGYRCC	1 cut(s)	721
BsiHKCI	CYCGRG	2 cut(s)	89, 122
BsiSI	CCGG	1 cut(s)	286
BslI	CCNNNNNNNGG	2 cut(s)	75, 731
BsmAI	GTCTC	1 cut(s)	415
BsmI	GAATGC	1 cut(s)	211
BsnI	GGCC	3 cut(s)	461, 689, 706
BsoBI	CYCGRG	2 cut(s)	89, 122
Bsp143I	GATC	4 cut(s)	382, 399, 643, 657
BspACI	CCGC	3 cut(s)	74, 76, 192
BspANI	GGCC	3 cut(s)	461, 689, 706
BspCNI	CTCAG	1 cut(s)	202
BspFNI	CGCG	1 cut(s)	76
BspLI	GGNNCC	3 cut(s)	120, 723, 752
BspPI	GGATC	1 cut(s)	377
BspT107I	GGYRCC	1 cut(s)	721
BspTI	CTTAAG	1 cut(s)	737
BsrI	ACTGG	1 cut(s)	104
BssECI	CCNNGG	3 cut(s)	74, 252, 364
BssMI	GATC	4 cut(s)	382, 399, 643, 657
BssNI	GRCGYC	1 cut(s)	30
BssSI	CACGAG	1 cut(s)	653
BssT1I	CCWWGG	1 cut(s)	252
Bst2BI	CACGAG	1 cut(s)	653
Bst4CI	ACNGT	3 cut(s)	246, 667, 785
Bst6I	CTCTTC	4 cut(s)	134, 140, 515, 740
BstACI	GRCGYC	1 cut(s)	30
BstAFI	CTTAAG	1 cut(s)	737
BstAPI	GCANNNNNTGC	2 cut(s)	412, 633
BstC8I	GCNNGC	1 cut(s)	620
BstDEI	CTNAG	3 cut(s)	54, 210, 339
BstDSI	CCRYGG	2 cut(s)	74, 364
BstF5I	GGATG	1 cut(s)	53
BstFNI	CGCG	1 cut(s)	76
BstKTI	GATC	4 cut(s)	385, 402, 646, 660
BstMAI	GTCTC	1 cut(s)	415
BstMBI	GATC	4 cut(s)	382, 399, 643, 657
BstMWI	GCNNNNNNNGC	5 cut(s)	85, 412, 624, 633, 712
BstNSI	RCATGY	1 cut(s)	475
BstUI	CGCG	1 cut(s)	76
BstV1I	GCAGC	1 cut(s)	418
BstV2I	GAAGAC	1 cut(s)	433
BstX2I	RGATCY	3 cut(s)	399, 643, 657
BstYI	RGATCY	3 cut(s)	399, 643, 657
BsuI	GTATCC	2 cut(s)	371, 500
BsuRI	GGCC	3 cut(s)	461, 689, 706
BtgI	CCRYGG	2 cut(s)	74, 364
BtsCI	GGATG	1 cut(s)	53
Cac8I	GCNNGC	1 cut(s)	620
Cfr13I	GGNCC	3 cut(s)	63, 283, 671
Cfr42I	CCGCGG	1 cut(s)	77
Csp6I	GTAC	2 cut(s)	247, 259
CviAII	CATG	2 cut(s)	472, 623
CviQI	GTAC	2 cut(s)	247, 259
DdeI	CTNAG	3 cut(s)	54, 210, 339
DpnI	GATC	4 cut(s)	384, 401, 645, 659
DpnII	GATC	4 cut(s)	382, 399, 643, 657
EaeI	YGGCCR	1 cut(s)	704
Eam1104I	CTCTTC	4 cut(s)	134, 140, 515, 740
EarI	CTCTTC	4 cut(s)	134, 140, 515, 740
Eco130I	CCWWGG	1 cut(s)	252
Eco47I	GGWCC	3 cut(s)	63, 283, 671
Eco57I	CTGAAG	1 cut(s)	539
Eco88I	CYCGRG	2 cut(s)	89, 122
EcoT14I	CCWWGG	1 cut(s)	252
ErhI	CCWWGG	1 cut(s)	252
FaeI	CATG	2 cut(s)	475, 626
FalI	AAGNNNNNCTT	4 cut(s)	386, 418, 449, 481
FatI	CATG	2 cut(s)	471, 622
FauNDI	CATATG	1 cut(s)	493
Fnu4HI	GCNGC	4 cut(s)	74, 77, 192, 407
FokI	GGATG	1 cut(s)	60
Fsp4HI	GCNGC	4 cut(s)	74, 77, 192, 407
FspBI	CTAG	1 cut(s)	823
GluI	GCNGC	4 cut(s)	74, 77, 192, 407
HaeIII	GGCC	3 cut(s)	461, 689, 706
HapII	CCGG	1 cut(s)	286
Hin1I	GRCGYC	1 cut(s)	30
Hin1II	CATG	2 cut(s)	475, 626
HincII	GTYRAC	1 cut(s)	28
HindII	GTYRAC	1 cut(s)	28
HindIII	AAGCTT	1 cut(s)	221
HinfI	GANTC	4 cut(s)	125, 318, 335, 576
HpaII	CCGG	1 cut(s)	286
HphI	GGTGA	1 cut(s)	110
Hpy166II	GTNNAC	3 cut(s)	28, 249, 454
Hpy188III	TCNNGA	4 cut(s)	91, 122, 445, 661
Hpy8I	GTNNAC	3 cut(s)	28, 249, 454
HpyAV	CCTTC	3 cut(s)	262, 523, 758
HpyCH4III	ACNGT	3 cut(s)	246, 667, 785
HpyCH4IV	ACGT	1 cut(s)	30
HpyCH4V	TGCA	2 cut(s)	406, 636
HpyF10VI	GCNNNNNNNGC	5 cut(s)	85, 412, 624, 633, 712
HpyF3I	CTNAG	3 cut(s)	54, 210, 339
HpySE526I	ACGT	1 cut(s)	30
Hsp92I	GRCGYC	1 cut(s)	30
Hsp92II	CATG	2 cut(s)	475, 626
KspI	CCGCGG	1 cut(s)	77
Kzo9I	GATC	4 cut(s)	382, 399, 643, 657
LpnPI	CCDG	9 cut(s)	117, 164, 299, 345, 458, 466, 530, 593, 762
Lsp1109I	GCAGC	1 cut(s)	418
LweI	GCATC	1 cut(s)	763
MaeI	CTAG	1 cut(s)	823
MaeII	ACGT	1 cut(s)	30
MaeIII	GTNAC	1 cut(s)	496
MalI	GATC	4 cut(s)	384, 401, 645, 659
MboI	GATC	4 cut(s)	382, 399, 643, 657
MflI	RGATCY	3 cut(s)	399, 643, 657
MlsI	TGGCCA	1 cut(s)	706
MluCI	AATT	3 cut(s)	36, 278, 533
MluNI	TGGCCA	1 cut(s)	706
MlyI	GAGTC	2 cut(s)	134, 344
MmeI	TCCRAC	1 cut(s)	649
MnlI	CCTC	9 cut(s)	76, 135, 145, 148, 308, 540, 679, 684, 741
Mox20I	TGGCCA	1 cut(s)	706
MscI	TGGCCA	1 cut(s)	706
MseI	TTAA	1 cut(s)	738
Msp20I	TGGCCA	1 cut(s)	706
MspA1I	CMGCKG	1 cut(s)	76
MspCI	CTTAAG	1 cut(s)	737
MspI	CCGG	1 cut(s)	286
Mva1269I	GAATGC	1 cut(s)	211
MvnI	CGCG	1 cut(s)	76
MwoI	GCNNNNNNNGC	5 cut(s)	85, 412, 624, 633, 712
NdeI	CATATG	1 cut(s)	493
NdeII	GATC	4 cut(s)	382, 399, 643, 657
NlaIII	CATG	2 cut(s)	475, 626
NlaIV	GGNNCC	3 cut(s)	120, 723, 752
NmuCI	GTSAC	1 cut(s)	496
NspI	RCATGY	1 cut(s)	475
PaeR7I	CTCGAG	1 cut(s)	89
PctI	GAATGC	1 cut(s)	211
PfeI	GAWTC	2 cut(s)	318, 576
PflMI	CCANNNNNTGG	1 cut(s)	731
PkrI	GCNGC	4 cut(s)	75, 78, 193, 408
PleI	GAGTC	2 cut(s)	133, 343
PpsI	GAGTC	2 cut(s)	133, 343
PspN4I	GGNNCC	3 cut(s)	120, 723, 752
PspPI	GGNCC	3 cut(s)	63, 283, 671
PsuI	RGATCY	3 cut(s)	399, 643, 657
RsaI	GTAC	2 cut(s)	248, 260
RsaNI	GTAC	2 cut(s)	247, 259
SacII	CCGCGG	1 cut(s)	77
SaqAI	TTAA	1 cut(s)	738
SatI	GCNGC	4 cut(s)	74, 77, 192, 407
Sau3AI	GATC	4 cut(s)	382, 399, 643, 657
Sau96I	GGNCC	3 cut(s)	63, 283, 671
SchI	GAGTC	2 cut(s)	134, 344
SfaNI	GCATC	1 cut(s)	763
Sfr274I	CTCGAG	1 cut(s)	89
Sfr303I	CCGCGG	1 cut(s)	77
SgrBI	CCGCGG	1 cut(s)	77
SinI	GGWCC	3 cut(s)	63, 283, 671
SlaI	CTCGAG	1 cut(s)	89
SmlI	CTYRAG	3 cut(s)	89, 716, 737
SmoI	CTYRAG	3 cut(s)	89, 716, 737
Sse9I	AATT	3 cut(s)	36, 278, 533
SsiI	CCGC	3 cut(s)	74, 76, 192
SspMI	CTAG	1 cut(s)	823
StyI	CCWWGG	1 cut(s)	252
TaaI	ACNGT	3 cut(s)	246, 667, 785
TaiI	ACGT	1 cut(s)	33
TaqI	TCGA	1 cut(s)	90
TasI	AATT	3 cut(s)	36, 278, 533
TatI	WGTACW	1 cut(s)	246
TauI	GCSGC	3 cut(s)	76, 79, 194
TfiI	GAWTC	2 cut(s)	318, 576
Tru1I	TTAA	1 cut(s)	738
Tru9I	TTAA	1 cut(s)	738
TseFI	GTSAC	1 cut(s)	496
TseI	GCWGC	1 cut(s)	406
Tsp45I	GTSAC	1 cut(s)	496
TspDTI	ATGAA	1 cut(s)	291
TspGWI	ACGGA	2 cut(s)	353, 653
Van91I	CCANNNNNTGG	1 cut(s)	731
Vha464I	CTTAAG	1 cut(s)	737
VpaK11BI	GGWCC	3 cut(s)	63, 283, 671
XapI	RAATTY	1 cut(s)	36
XceI	RCATGY	1 cut(s)	475
XhoI	CTCGAG	1 cut(s)	89
XspI	CTAG	1 cut(s)	823
ZraI	GACGTC	1 cut(s)	31

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.