Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0001527

Physical Location & Seq

Genomic Coordinates Forward (+)

6041651 .. 6044139

Gene Structure 2489 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g07900.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGACTCAAGCCCAATTTATCTTGGGCCCTAAGTATCGGACTAAACTTACTTTCACTCCCACCATCTTCTTCTTAGTAGCCCGCCGAGAAACCCCTAACCCTAATTCATCGTCACCCAAGACACAGCGGCTACTACTCGAGATGGGTGAAGAAGTCAAGGTAGTGGTTCCAGAGTCCGTGTTGAAAAAGAGAAAGAGGGAAGAGCAGTGGGCCTTGGCTAAGGAACAGGAGCGTGTAGCTGCCAACAAGAAGAAGGCTGAGAACCGGAAGCTCATTTACAACAGAGCAAAGCAGTATTCTGAGGAGTATGAGCAGCAGTTGAAGCGTGAGGCTAAGTTGAAAGGTGGATTTTATGTTGACCCAGAGGCTAAGCTCTTGTTCATTATTCGTATCCGTGGTATCAACGCGATTGACCCAAAGACCAAGAAGATCTTGCAACTCTTGAGGCTGAGACAGATCTTCAATGGAGTCTTCCTAAAAGTTAACAAGGCCACCCTCAATATGCTTCACAGGGTTGAACCATATGTTACTTATGGGTACCCCAACTTGAAGAGCGTCAAGGAATTGATATACAAGAGAGGGTACGGTAAGCTGAACAAGCAGAGGATTGCCTTGACTGACAATGCCATTGTTGAGGAGGCTCTTGGCAAATATGGCATCATCTGCACGGAAGATCTTATTCACGAGATCTTGACAGTTGGTCCTCATTTCAAGGAGGCCAATAACTTTCTGTGGCCATTCAAGCTTAAGGCACCACTGGGCGGTCTTAAGAAGAAGAGGAACCACTACGTGGAAGGTGGAGATGCTGGAAACCGTGAGAACTACATCAACGAGCTTATTAGGAGAATGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L30 Ribosomal_L30_N

Protein Analysis

285

Amino Acids

33.03

Weight (kDa)

9.98

Isoelectric Point (pI)

39.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001527)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01250 AT2G01250 AT2G44120 AT2G44120 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580
fragaria_vesca	FvH4_6g37170 FvH4_6g37320 FvH4_6g37320
malus_domestica	MD09G1160400.v1.1 MD16G1246400.v1.1 MD17G1146200.v1.1
prunus_persica	Prupe.1G073100_v2.0.a1 Prupe.3G019000_v2.0.a1
pyrus_communis	pycom09g07900 pycom16g20690
rosa_chinensis	RchiOBHm_Chr2g0149791 RchiOBHm_Chr2g0150141
rosa_laevigata	RLG00000020445 RLG00000020470 RLG00000034320
rosa_multiflora	Rmu_sc0002002.1_g000018 Rmu_sc0009445.1_g000002 Rmu_sc0018143.1_g000004 Rmu_sc0019102.1_g000006 Rmu_ssc0000020.1_g000014
rosa_roxburghii	Rroxscaffold_2G00097410 Rroxscaffold_2G00097690
rosa_rugosa	Rorug02G0416300 Rorug02G0416400 Rorug02G0416400 Rorug02G0416500 Rorug02G0419400 Rorug04G0013800
rosa_samantha	Rh2AG478100 Rh2BG487200 Rh2BG490700 Rh2CG461300 Rh2CG464300 Rh2DG496300 Rh2DG499500 Rh4BG089300
rosa_wichuraiana	Rw2G038780 Rw2G039030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	537
AccB1I	GGYRCC	2 cut(s)	537, 751
AccB7I	CCANNNNNTGG	1 cut(s)	790
AccII	CGCG	1 cut(s)	407
AciI	CCGC	3 cut(s)	82, 127, 762
AcoI	YGGCCR	1 cut(s)	734
AdeI	CACNNNGTG	1 cut(s)	790
AfaI	GTAC	2 cut(s)	539, 584
AfiI	CCNNNNNNNGG	2 cut(s)	761, 790
AflII	CTTAAG	2 cut(s)	746, 767
AgsI	TTSAA	8 cut(s)	184, 322, 340, 463, 518, 550, 712, 742
AhdI	GACNNNNNGTC	1 cut(s)	699
AluBI	AGCT	6 cut(s)	239, 271, 373, 592, 745, 835
AluI	AGCT	6 cut(s)	239, 271, 373, 592, 745, 835
Alw26I	GTCTC	1 cut(s)	445
Ama87I	CYCGRG	1 cut(s)	137
AoxI	GGCC	5 cut(s)	25, 210, 489, 717, 734
ApaI	GGGCCC	1 cut(s)	29
ApeKI	GCWGC	2 cut(s)	239, 313
Asp718I	GGTACC	1 cut(s)	537
AspS9I	GGNCC	4 cut(s)	25, 26, 210, 701
AsuHPI	GGTGA	2 cut(s)	105, 158
AvaI	CYCGRG	1 cut(s)	137
AvaII	GGWCC	1 cut(s)	701
BaeGI	GKGCMC	1 cut(s)	29
BalI	TGGCCA	1 cut(s)	736
BanI	GGYRCC	2 cut(s)	537, 751
BanII	GRGCYC	1 cut(s)	29
BarI	GAAGNNNNNNTAC	2 cut(s)	260, 292
BauI	CACGAG	1 cut(s)	683
BbsI	GAAGAC	1 cut(s)	463
BbvI	GCAGC	2 cut(s)	226, 325
BccI	CCATC	2 cut(s)	71, 136
BciVI	GTATCC	1 cut(s)	401
BcoDI	GTCTC	1 cut(s)	445
BfrI	CTTAAG	2 cut(s)	746, 767
BfuI	GTATCC	1 cut(s)	401
BglII	AGATCT	4 cut(s)	429, 456, 673, 687
BisI	GCNGC	3 cut(s)	128, 240, 314
BlpI	GCTNAGC	1 cut(s)	369
BlsI	GCNGC	3 cut(s)	129, 241, 315
Bme18I	GGWCC	1 cut(s)	701
BmeRI	GACNNNNNGTC	1 cut(s)	699
BmeT110I	CYCGRG	1 cut(s)	137
BmgT120I	GGNCC	4 cut(s)	25, 26, 210, 701
BmiI	GGNNCC	5 cut(s)	27, 168, 539, 753, 782
BmrI	ACTGGG	1 cut(s)	767
BmsI	GCATC	2 cut(s)	666, 793
BmuI	ACTGGG	1 cut(s)	767
BpiI	GAAGAC	1 cut(s)	463
Bpu10I	CCTNAGC	1 cut(s)	219
Bpu1102I	GCTNAGC	1 cut(s)	369
BpuEI	CTTGAG	1 cut(s)	463
BsaAI	YACGTR	1 cut(s)	790
BsaJI	CCNNGG	2 cut(s)	213, 394
BsaWI	WCCGGW	1 cut(s)	264
BsaXI	ACNNNNNCTCC	2 cut(s)	40, 70
Bsc4I	CCNNNNNNNGG	2 cut(s)	761, 790
Bse1I	ACTGG	1 cut(s)	762
BseDI	CCNNGG	2 cut(s)	213, 394
BseLI	CCNNNNNNNGG	2 cut(s)	761, 790
BseMII	CTCAG	3 cut(s)	249, 291, 440
BseNI	ACTGG	1 cut(s)	762
BseRI	GAGGAG	2 cut(s)	317, 650
BseSI	GKGCMC	1 cut(s)	29
BseXI	GCAGC	2 cut(s)	226, 325
BsgI	GTGCAG	1 cut(s)	649
Bsh1236I	CGCG	1 cut(s)	407
BshFI	GGCC	5 cut(s)	27, 212, 491, 719, 736
BshNI	GGYRCC	2 cut(s)	537, 751
BsiHKCI	CYCGRG	1 cut(s)	137
BsiSI	CCGG	1 cut(s)	265
BslI	CCNNNNNNNGG	2 cut(s)	761, 790
BsmAI	GTCTC	1 cut(s)	445
BsnI	GGCC	5 cut(s)	27, 212, 491, 719, 736
BsoBI	CYCGRG	1 cut(s)	137
Bsp120I	GGGCCC	1 cut(s)	25
Bsp1286I	GDGCHC	1 cut(s)	29
Bsp143I	GATC	4 cut(s)	429, 456, 673, 687
Bsp1720I	GCTNAGC	1 cut(s)	369
BspACI	CCGC	3 cut(s)	82, 127, 762
BspANI	GGCC	5 cut(s)	27, 212, 491, 719, 736
BspCNI	CTCAG	3 cut(s)	250, 292, 441
BspFNI	CGCG	1 cut(s)	407
BspLI	GGNNCC	5 cut(s)	27, 168, 539, 753, 782
BspQI	GCTCTTC	2 cut(s)	195, 545
BspT107I	GGYRCC	2 cut(s)	537, 751
BspTI	CTTAAG	2 cut(s)	746, 767
BsrI	ACTGG	1 cut(s)	762
BssECI	CCNNGG	2 cut(s)	213, 394
BssMI	GATC	4 cut(s)	429, 456, 673, 687
BssSI	CACGAG	1 cut(s)	683
BssT1I	CCWWGG	1 cut(s)	213
Bst2BI	CACGAG	1 cut(s)	683
Bst4CI	ACNGT	3 cut(s)	587, 697, 815
Bst6I	CTCTTC	3 cut(s)	195, 545, 770
BstAFI	CTTAAG	2 cut(s)	746, 767
BstAPI	GCANNNNNTGC	1 cut(s)	663
BstBAI	YACGTR	1 cut(s)	790
BstC8I	GCNNGC	1 cut(s)	82
BstDEI	CTNAG	8 cut(s)	30, 73, 219, 258, 300, 333, 369, 449
BstDSI	CCRYGG	1 cut(s)	394
BstFNI	CGCG	1 cut(s)	407
BstKTI	GATC	4 cut(s)	432, 459, 676, 690
BstMAI	GTCTC	1 cut(s)	445
BstMBI	GATC	4 cut(s)	429, 456, 673, 687
BstMWI	GCNNNNNNNGC	5 cut(s)	322, 598, 654, 663, 742
BstSLI	GKGCMC	1 cut(s)	29
BstUI	CGCG	1 cut(s)	407
BstV1I	GCAGC	2 cut(s)	226, 325
BstV2I	GAAGAC	1 cut(s)	463
BstX2I	RGATCY	4 cut(s)	429, 456, 673, 687
BstYI	RGATCY	4 cut(s)	429, 456, 673, 687
BsuI	GTATCC	1 cut(s)	401
BsuRI	GGCC	5 cut(s)	27, 212, 491, 719, 736
BtgI	CCRYGG	1 cut(s)	394
BtsI	GCAGTG	1 cut(s)	212
BtsIMutI	CAGTG	2 cut(s)	212, 755
Cac8I	GCNNGC	1 cut(s)	82
Cfr13I	GGNCC	4 cut(s)	25, 26, 210, 701
CseI	GACGC	1 cut(s)	544
Csp6I	GTAC	2 cut(s)	538, 583
CviQI	GTAC	2 cut(s)	538, 583
DdeI	CTNAG	8 cut(s)	30, 73, 219, 258, 300, 333, 369, 449
DpnI	GATC	4 cut(s)	431, 458, 675, 689
DpnII	GATC	4 cut(s)	429, 456, 673, 687
DraIII	CACNNNGTG	1 cut(s)	790
DriI	GACNNNNNGTC	1 cut(s)	699
EaeI	YGGCCR	1 cut(s)	734
Eam1104I	CTCTTC	3 cut(s)	195, 545, 770
Eam1105I	GACNNNNNGTC	1 cut(s)	699
EarI	CTCTTC	3 cut(s)	195, 545, 770
Eco130I	CCWWGG	1 cut(s)	213
Eco24I	GRGCYC	1 cut(s)	29
Eco47I	GGWCC	1 cut(s)	701
Eco88I	CYCGRG	1 cut(s)	137
EcoO109I	RGGNCCY	1 cut(s)	26
EcoT14I	CCWWGG	1 cut(s)	213
EcoT38I	GRGCYC	1 cut(s)	29
ErhI	CCWWGG	1 cut(s)	213
FaiI	YATR	8 cut(s)	309, 354, 503, 523, 525, 534, 571, 654
FalI	AAGNNNNNCTT	2 cut(s)	416, 448
FauI	CCCGC	1 cut(s)	89
FauNDI	CATATG	1 cut(s)	523
Fnu4HI	GCNGC	3 cut(s)	128, 240, 314
FriOI	GRGCYC	1 cut(s)	29
Fsp4HI	GCNGC	3 cut(s)	128, 240, 314
GluI	GCNGC	3 cut(s)	128, 240, 314
HaeIII	GGCC	5 cut(s)	27, 212, 491, 719, 736
HapII	CCGG	1 cut(s)	265
HgaI	GACGC	1 cut(s)	544
HincII	GTYRAC	2 cut(s)	358, 484
HindII	GTYRAC	2 cut(s)	358, 484
HindIII	AAGCTT	1 cut(s)	743
HinfI	GANTC	3 cut(s)	4, 173, 468
HpaI	GTTAAC	1 cut(s)	484
HpaII	CCGG	1 cut(s)	265
HphI	GGTGA	2 cut(s)	105, 158
Hpy166II	GTNNAC	2 cut(s)	358, 484
Hpy188I	TCNGA	2 cut(s)	39, 301
Hpy188III	TCNNGA	5 cut(s)	139, 170, 442, 683, 691
Hpy8I	GTNNAC	2 cut(s)	358, 484
HpyAV	CCTTC	2 cut(s)	247, 788
HpyCH4III	ACNGT	3 cut(s)	587, 697, 815
HpyCH4IV	ACGT	1 cut(s)	789
HpyCH4V	TGCA	2 cut(s)	436, 666
HpyF10VI	GCNNNNNNNGC	5 cut(s)	322, 598, 654, 663, 742
HpyF3I	CTNAG	8 cut(s)	30, 73, 219, 258, 300, 333, 369, 449
HpySE526I	ACGT	1 cut(s)	789
KpnI	GGTACC	1 cut(s)	541
KspAI	GTTAAC	1 cut(s)	484
Kzo9I	GATC	4 cut(s)	429, 456, 673, 687
LguI	GCTCTTC	2 cut(s)	195, 545
LmnI	GCTCC	1 cut(s)	229
LpnPI	CCDG	7 cut(s)	183, 212, 278, 375, 496, 743, 792
Lsp1109I	GCAGC	2 cut(s)	226, 325
LweI	GCATC	2 cut(s)	666, 793
MaeII	ACGT	1 cut(s)	789
MaeIII	GTNAC	2 cut(s)	111, 526
MalI	GATC	4 cut(s)	431, 458, 675, 689
MboI	GATC	4 cut(s)	429, 456, 673, 687
MflI	RGATCY	4 cut(s)	429, 456, 673, 687
MhlI	GDGCHC	1 cut(s)	29
MlsI	TGGCCA	1 cut(s)	736
MluCI	AATT	4 cut(s)	14, 103, 563, 850
MluNI	TGGCCA	1 cut(s)	736
MlyI	GAGTC	2 cut(s)	182, 477
Mox20I	TGGCCA	1 cut(s)	736
MscI	TGGCCA	1 cut(s)	736
MseI	TTAA	3 cut(s)	483, 747, 768
Msp20I	TGGCCA	1 cut(s)	736
MspA1I	CMGCKG	1 cut(s)	127
MspCI	CTTAAG	2 cut(s)	746, 767
MspI	CCGG	1 cut(s)	265
MvnI	CGCG	1 cut(s)	407
MwoI	GCNNNNNNNGC	5 cut(s)	322, 598, 654, 663, 742
NdeI	CATATG	1 cut(s)	523
NdeII	GATC	4 cut(s)	429, 456, 673, 687
NlaIV	GGNNCC	5 cut(s)	27, 168, 539, 753, 782
NmeAIII	GCCGAG	1 cut(s)	110
NmuCI	GTSAC	1 cut(s)	111
PaeR7I	CTCGAG	1 cut(s)	137
PciSI	GCTCTTC	2 cut(s)	195, 545
PflMI	CCANNNNNTGG	1 cut(s)	790
PkrI	GCNGC	3 cut(s)	129, 241, 315
PleI	GAGTC	2 cut(s)	181, 476
PpsI	GAGTC	2 cut(s)	181, 476
Ppu21I	YACGTR	1 cut(s)	790
PspN4I	GGNNCC	5 cut(s)	27, 168, 539, 753, 782
PspOMI	GGGCCC	1 cut(s)	25
PspPI	GGNCC	4 cut(s)	25, 26, 210, 701
PsuI	RGATCY	4 cut(s)	429, 456, 673, 687
RsaI	GTAC	2 cut(s)	539, 584
RsaNI	GTAC	2 cut(s)	538, 583
SapI	GCTCTTC	2 cut(s)	195, 545
SaqAI	TTAA	3 cut(s)	483, 747, 768
SatI	GCNGC	3 cut(s)	128, 240, 314
Sau3AI	GATC	4 cut(s)	429, 456, 673, 687
Sau96I	GGNCC	4 cut(s)	25, 26, 210, 701
SchI	GAGTC	2 cut(s)	182, 477
SduI	GDGCHC	1 cut(s)	29
SfaNI	GCATC	2 cut(s)	666, 793
Sfr274I	CTCGAG	1 cut(s)	137
SinI	GGWCC	1 cut(s)	701
SlaI	CTCGAG	1 cut(s)	137
SmlI	CTYRAG	5 cut(s)	6, 137, 442, 746, 767
SmoI	CTYRAG	5 cut(s)	6, 137, 442, 746, 767
Sse9I	AATT	4 cut(s)	14, 103, 563, 850
SsiI	CCGC	3 cut(s)	82, 127, 762
StyI	CCWWGG	1 cut(s)	213
TaaI	ACNGT	3 cut(s)	587, 697, 815
TaiI	ACGT	1 cut(s)	792
TaqI	TCGA	1 cut(s)	138
TasI	AATT	4 cut(s)	14, 103, 563, 850
TauI	GCSGC	1 cut(s)	130
Tru1I	TTAA	3 cut(s)	483, 747, 768
Tru9I	TTAA	3 cut(s)	483, 747, 768
TscAI	CASTG	2 cut(s)	212, 762
TseFI	GTSAC	1 cut(s)	111
TseI	GCWGC	2 cut(s)	239, 313
Tsp45I	GTSAC	1 cut(s)	111
TspDTI	ATGAA	2 cut(s)	96, 370
TspGWI	ACGGA	3 cut(s)	166, 383, 683
TspRI	CASTG	2 cut(s)	212, 762
Van91I	CCANNNNNTGG	1 cut(s)	790
Vha464I	CTTAAG	2 cut(s)	746, 767
VpaK11BI	GGWCC	1 cut(s)	701
XhoI	CTCGAG	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.