Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0001527

Physical Location & Seq

Genomic Coordinates Forward (+)

15382825 .. 15383863

Gene Structure 1039 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG089300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGCATAGGGAGTATTCTGTTTCAAGAGATGGTTCAGCGCCTTGTTTACCTATTCCAGCTTTGGGTAAGCATGGAATCATTTGCGTGGAGGACCTCATCCATGAGATCTTGACTGCTGGACCCCATTTCAAGGAGGCAAACAACTTCCTCTGGCCACTTAAGCTCAAGGCACCCCTTGGTGGTTTGAAGAAGAAGAGAAACCACTATGTTGAAGGTGGTGATGCTGGAAACCGCGAAGATTACATCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000463 GO:0000470 GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0030312 GO:0031090 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0097159 GO:0098588 GO:0098805 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L30 Ribosomal_L30_N

Protein Analysis

83

Amino Acids

9.22

Weight (kDa)

7.84

Isoelectric Point (pI)

42.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001527)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01250 AT2G01250 AT2G44120 AT2G44120 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580
fragaria_vesca	FvH4_6g37170 FvH4_6g37320 FvH4_6g37320
malus_domestica	MD09G1160400.v1.1 MD16G1246400.v1.1 MD17G1146200.v1.1
prunus_persica	Prupe.1G073100_v2.0.a1 Prupe.3G019000_v2.0.a1
pyrus_communis	pycom09g07900 pycom16g20690
rosa_chinensis	RchiOBHm_Chr2g0149791 RchiOBHm_Chr2g0150141
rosa_laevigata	RLG00000020445 RLG00000020470 RLG00000034320
rosa_multiflora	Rmu_sc0002002.1_g000018 Rmu_sc0009445.1_g000002 Rmu_sc0018143.1_g000004 Rmu_sc0019102.1_g000006 Rmu_ssc0000020.1_g000014
rosa_roxburghii	Rroxscaffold_2G00097410 Rroxscaffold_2G00097690
rosa_rugosa	Rorug02G0416300 Rorug02G0416400 Rorug02G0416400 Rorug02G0416500 Rorug02G0419400 Rorug04G0013800
rosa_samantha	Rh2AG478100 Rh2BG487200 Rh2BG490700 Rh2CG461300 Rh2CG464300 Rh2DG496300 Rh2DG499500 Rh4BG089300
rosa_wichuraiana	Rw2G038780 Rw2G039030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	169
AccII	CGCG	1 cut(s)	234
AciI	CCGC	1 cut(s)	232
AcoI	YGGCCR	1 cut(s)	152
AfiI	CCNNNNNNNGG	3 cut(s)	62, 130, 179
AflII	CTTAAG	1 cut(s)	158
AgsI	TTSAA	4 cut(s)	24, 130, 187, 212
AluBI	AGCT	2 cut(s)	59, 163
AluI	AGCT	2 cut(s)	59, 163
AoxI	GGCC	1 cut(s)	152
AspLEI	GCGC	1 cut(s)	40
AspS9I	GGNCC	2 cut(s)	91, 119
AsuHPI	GGTGA	1 cut(s)	230
AvaII	GGWCC	2 cut(s)	91, 119
BalI	TGGCCA	1 cut(s)	154
BanI	GGYRCC	1 cut(s)	169
BccI	CCATC	1 cut(s)	23
BfoI	RGCGCY	1 cut(s)	41
BfrI	CTTAAG	1 cut(s)	158
BglII	AGATCT	1 cut(s)	105
Bme18I	GGWCC	2 cut(s)	91, 119
BmgT120I	GGNCC	2 cut(s)	91, 119
BmiI	GGNNCC	2 cut(s)	121, 171
BmsI	GCATC	1 cut(s)	211
BpuEI	CTTGAG	1 cut(s)	149
BsaJI	CCNNGG	1 cut(s)	175
Bsc4I	CCNNNNNNNGG	3 cut(s)	62, 130, 179
BseDI	CCNNGG	1 cut(s)	175
BseGI	GGATG	1 cut(s)	96
BseLI	CCNNNNNNNGG	3 cut(s)	62, 130, 179
Bsh1236I	CGCG	1 cut(s)	234
BshFI	GGCC	1 cut(s)	154
BshNI	GGYRCC	1 cut(s)	169
BslI	CCNNNNNNNGG	3 cut(s)	62, 130, 179
BsnI	GGCC	1 cut(s)	154
Bsp143I	GATC	1 cut(s)	105
BspACI	CCGC	1 cut(s)	232
BspANI	GGCC	1 cut(s)	154
BspFNI	CGCG	1 cut(s)	234
BspLI	GGNNCC	2 cut(s)	121, 171
BspT107I	GGYRCC	1 cut(s)	169
BspTI	CTTAAG	1 cut(s)	158
BssECI	CCNNGG	1 cut(s)	175
BssMI	GATC	1 cut(s)	105
BssT1I	CCWWGG	1 cut(s)	175
Bst6I	CTCTTC	1 cut(s)	188
BstAFI	CTTAAG	1 cut(s)	158
BstF5I	GGATG	1 cut(s)	96
BstFNI	CGCG	1 cut(s)	234
BstH2I	RGCGCY	1 cut(s)	41
BstHHI	GCGC	1 cut(s)	40
BstKTI	GATC	1 cut(s)	108
BstMBI	GATC	1 cut(s)	105
BstMWI	GCNNNNNNNGC	1 cut(s)	160
BstUI	CGCG	1 cut(s)	234
BstX2I	RGATCY	1 cut(s)	105
BstYI	RGATCY	1 cut(s)	105
BsuRI	GGCC	1 cut(s)	154
BtsCI	GGATG	1 cut(s)	96
CfoI	GCGC	1 cut(s)	40
Cfr13I	GGNCC	2 cut(s)	91, 119
CviAII	CATG	2 cut(s)	71, 101
CviJI	RGCY	3 cut(s)	59, 154, 163
CviKI_1	RGCY	3 cut(s)	59, 154, 163
DpnI	GATC	1 cut(s)	107
DpnII	GATC	1 cut(s)	105
EaeI	YGGCCR	1 cut(s)	152
Eam1104I	CTCTTC	1 cut(s)	188
EarI	CTCTTC	1 cut(s)	188
Eco130I	CCWWGG	1 cut(s)	175
Eco47I	GGWCC	2 cut(s)	91, 119
EcoO109I	RGGNCCY	1 cut(s)	91
EcoT14I	CCWWGG	1 cut(s)	175
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	175
FaeI	CATG	2 cut(s)	74, 104
FaiI	YATR	4 cut(s)	6, 72, 102, 207
FatI	CATG	2 cut(s)	70, 100
FokI	GGATG	1 cut(s)	83
GlaI	GCGC	1 cut(s)	39
HaeII	RGCGCY	1 cut(s)	41
HaeIII	GGCC	1 cut(s)	154
HhaI	GCGC	1 cut(s)	40
Hin1II	CATG	2 cut(s)	74, 104
Hin6I	GCGC	1 cut(s)	38
HinP1I	GCGC	1 cut(s)	38
HinfI	GANTC	1 cut(s)	75
HphI	GGTGA	1 cut(s)	230
Hpy166II	GTNNAC	1 cut(s)	47
Hpy188III	TCNNGA	2 cut(s)	24, 109
Hpy8I	GTNNAC	1 cut(s)	47
HpyAV	CCTTC	1 cut(s)	206
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	1 cut(s)	160
Hsp92II	CATG	2 cut(s)	74, 104
HspAI	GCGC	1 cut(s)	38
Kzo9I	GATC	1 cut(s)	105
LpnPI	CCDG	4 cut(s)	69, 102, 136, 210
LweI	GCATC	1 cut(s)	211
MalI	GATC	1 cut(s)	107
MboI	GATC	1 cut(s)	105
MboII	GAAGA	4 cut(s)	199, 202, 205, 248
MflI	RGATCY	1 cut(s)	105
MlsI	TGGCCA	1 cut(s)	154
MluCI	AATT	1 cut(s)	247
MluNI	TGGCCA	1 cut(s)	154
MnlI	CCTC	4 cut(s)	82, 104, 127, 158
Mox20I	TGGCCA	1 cut(s)	154
Mph1103I	ATGCAT	1 cut(s)	6
MscI	TGGCCA	1 cut(s)	154
MseI	TTAA	2 cut(s)	159, 250
MslI	CAYNNNNRTG	1 cut(s)	83
Msp20I	TGGCCA	1 cut(s)	154
MspCI	CTTAAG	1 cut(s)	158
MvnI	CGCG	1 cut(s)	234
MwoI	GCNNNNNNNGC	1 cut(s)	160
NdeII	GATC	1 cut(s)	105
NlaIII	CATG	2 cut(s)	74, 104
NlaIV	GGNNCC	2 cut(s)	121, 171
NsiI	ATGCAT	1 cut(s)	6
PfeI	GAWTC	1 cut(s)	75
PpuMI	RGGWCCY	1 cut(s)	91
Psp5II	RGGWCCY	1 cut(s)	91
PspN4I	GGNNCC	2 cut(s)	121, 171
PspPI	GGNCC	2 cut(s)	91, 119
PspPPI	RGGWCCY	1 cut(s)	91
PsuI	RGATCY	1 cut(s)	105
RseI	CAYNNNNRTG	1 cut(s)	83
SaqAI	TTAA	2 cut(s)	159, 250
Sau3AI	GATC	1 cut(s)	105
Sau96I	GGNCC	2 cut(s)	91, 119
SetI	ASST	5 cut(s)	52, 61, 96, 165, 217
SfaNI	GCATC	1 cut(s)	211
SinI	GGWCC	2 cut(s)	91, 119
SmiMI	CAYNNNNRTG	1 cut(s)	83
SmlI	CTYRAG	2 cut(s)	158, 164
SmoI	CTYRAG	2 cut(s)	158, 164
Sse9I	AATT	1 cut(s)	247
SsiI	CCGC	1 cut(s)	232
StyI	CCWWGG	1 cut(s)	175
TasI	AATT	1 cut(s)	247
TfiI	GAWTC	1 cut(s)	75
Tru1I	TTAA	2 cut(s)	159, 250
Tru9I	TTAA	2 cut(s)	159, 250
Vha464I	CTTAAG	1 cut(s)	158
VpaK11BI	GGWCC	2 cut(s)	91, 119
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.