Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0018143.1

Orthogroup ID

OG0001527

Physical Location & Seq

Genomic Coordinates Reverse (-)

21901 .. 23998

Gene Structure 2098 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0018143.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

atgaacggacgataccccgccgataaagccctcaaccctcaccattcgaagccgcggcgacctcagctcgagatgggtgaagcagtcaaggttgtggttccagagtctgtcctaaagaagaggaagagagaggaggaatgggccttggcaaagaagcaggggctagaagccgccaagaaattgaactctgagaataggaagcttatttacaacaaatccaaacagtacaccaaggagtacgcagagaaggacaatgaattggtccggttgaagcgtgaagcaaggctgaaaggaggattctatgtcgagccagagtctaagctcttgtttatcattcgtatccgtggtatcaatgccattgatccaaagacaaagaagatcttgcagcttttgcgtttgagacagatattcaatggtgtcttcctgaaagtaaacaaggccaccttgaacatgcttcacagggttgagccatatgtcacttatggataccccaacttgaagagtgtcaaggaattgatttacaagaggggttatggcaagttgaacaagcagagaattgccttgactgataactctgttgttgaacagggtttgggcaagcatggcattatctgcactgaggatcttattcacgagatcttgacagttggacctcattttaaggaggccaacaactttctgtggccatttaagctcaaggcaccattgggtggtcttaagaagaagaggaaccattatgttgaaggtggagatgctggaaaccgtgagaactacatcaatgagcttattaggagaatgaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L30 Ribosomal_L30_N

Protein Analysis

267

Amino Acids

30.95

Weight (kDa)

10.01

Isoelectric Point (pI)

37.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001527)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01250 AT2G01250 AT2G44120 AT2G44120 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580
fragaria_vesca	FvH4_6g37170 FvH4_6g37320 FvH4_6g37320
malus_domestica	MD09G1160400.v1.1 MD16G1246400.v1.1 MD17G1146200.v1.1
prunus_persica	Prupe.1G073100_v2.0.a1 Prupe.3G019000_v2.0.a1
pyrus_communis	pycom09g07900 pycom16g20690
rosa_chinensis	RchiOBHm_Chr2g0149791 RchiOBHm_Chr2g0150141
rosa_laevigata	RLG00000020445 RLG00000020470 RLG00000034320
rosa_multiflora	Rmu_sc0002002.1_g000018 Rmu_sc0009445.1_g000002 Rmu_sc0018143.1_g000004 Rmu_sc0019102.1_g000006 Rmu_ssc0000020.1_g000014
rosa_roxburghii	Rroxscaffold_2G00097410 Rroxscaffold_2G00097690
rosa_rugosa	Rorug02G0416300 Rorug02G0416400 Rorug02G0416400 Rorug02G0416500 Rorug02G0419400 Rorug04G0013800
rosa_samantha	Rh2AG478100 Rh2BG487200 Rh2BG490700 Rh2CG461300 Rh2CG464300 Rh2DG496300 Rh2DG499500 Rh4BG089300
rosa_wichuraiana	Rw2G038780 Rw2G039030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	700
AccB7I	CCANNNNNTGG	1 cut(s)	710
AccII	CGCG	1 cut(s)	55
AciI	CCGC	4 cut(s)	18, 53, 55, 171
AclWI	GGATC	2 cut(s)	356, 630
AcoI	YGGCCR	1 cut(s)	683
AfaI	GTAC	2 cut(s)	227, 239
AfiI	CCNNNNNNNGG	1 cut(s)	710
AflII	CTTAAG	1 cut(s)	716
AgsI	TTSAA	8 cut(s)	184, 271, 412, 448, 499, 544, 584, 743
AluBI	AGCT	6 cut(s)	67, 202, 322, 388, 694, 784
AluI	AGCT	6 cut(s)	67, 202, 322, 388, 694, 784
Alw26I	GTCTC	1 cut(s)	394
AlwI	GGATC	2 cut(s)	356, 630
AlwNI	CAGNNNCTG	1 cut(s)	107
Ama87I	CYCGRG	1 cut(s)	68
AoxI	GGCC	4 cut(s)	141, 438, 666, 683
ApeKI	GCWGC	1 cut(s)	385
AspS9I	GGNCC	3 cut(s)	141, 262, 650
AsuHPI	GGTGA	2 cut(s)	32, 89
AsuII	TTCGAA	1 cut(s)	47
AvaI	CYCGRG	1 cut(s)	68
AvaII	GGWCC	2 cut(s)	262, 650
BalI	TGGCCA	1 cut(s)	685
BanI	GGYRCC	1 cut(s)	700
BarI	GAAGNNNNNNTAC	2 cut(s)	191, 223
BauI	CACGAG	1 cut(s)	632
BbsI	GAAGAC	1 cut(s)	412
BbvCI	CCTCAGC	1 cut(s)	63
BbvI	GCAGC	1 cut(s)	397
BccI	CCATC	1 cut(s)	67
BciVI	GTATCC	2 cut(s)	350, 479
BcoDI	GTCTC	1 cut(s)	394
BfaI	CTAG	2 cut(s)	164, 802
BfrI	CTTAAG	1 cut(s)	716
BfuI	GTATCC	2 cut(s)	350, 479
BglII	AGATCT	2 cut(s)	378, 636
BisI	GCNGC	4 cut(s)	53, 56, 171, 386
BlsI	GCNGC	4 cut(s)	54, 57, 172, 387
Bme18I	GGWCC	2 cut(s)	262, 650
BmeT110I	CYCGRG	1 cut(s)	68
BmgT120I	GGNCC	3 cut(s)	141, 262, 650
BmiI	GGNNCC	3 cut(s)	99, 702, 731
BmsI	GCATC	1 cut(s)	742
BpiI	GAAGAC	1 cut(s)	412
Bpu10I	CCTNAGC	1 cut(s)	63
Bpu14I	TTCGAA	1 cut(s)	47
BpuEI	CTTGAG	1 cut(s)	680
BsaJI	CCNNGG	4 cut(s)	53, 144, 231, 343
BsaWI	WCCGGW	1 cut(s)	264
Bsc4I	CCNNNNNNNGG	1 cut(s)	710
BseDI	CCNNGG	4 cut(s)	53, 144, 231, 343
BseLI	CCNNNNNNNGG	1 cut(s)	710
BseMII	CTCAG	3 cut(s)	77, 180, 609
BseRI	GAGGAG	1 cut(s)	146
BseXI	GCAGC	1 cut(s)	397
BsgI	GTGCAG	1 cut(s)	598
Bsh1236I	CGCG	1 cut(s)	55
BshFI	GGCC	4 cut(s)	143, 440, 668, 685
BshNI	GGYRCC	1 cut(s)	700
BsiHKCI	CYCGRG	1 cut(s)	68
BsiSI	CCGG	1 cut(s)	265
BslI	CCNNNNNNNGG	1 cut(s)	710
BsmAI	GTCTC	1 cut(s)	394
BsnI	GGCC	4 cut(s)	143, 440, 668, 685
BsoBI	CYCGRG	1 cut(s)	68
Bsp119I	TTCGAA	1 cut(s)	47
Bsp143I	GATC	4 cut(s)	361, 378, 622, 636
BspACI	CCGC	4 cut(s)	18, 53, 55, 171
BspANI	GGCC	4 cut(s)	143, 440, 668, 685
BspCNI	CTCAG	3 cut(s)	76, 181, 610
BspFNI	CGCG	1 cut(s)	55
BspLI	GGNNCC	3 cut(s)	99, 702, 731
BspPI	GGATC	2 cut(s)	356, 630
BspT104I	TTCGAA	1 cut(s)	47
BspT107I	GGYRCC	1 cut(s)	700
BspTI	CTTAAG	1 cut(s)	716
BssECI	CCNNGG	4 cut(s)	53, 144, 231, 343
BssMI	GATC	4 cut(s)	361, 378, 622, 636
BssSI	CACGAG	1 cut(s)	632
BssT1I	CCWWGG	2 cut(s)	144, 231
Bst2BI	CACGAG	1 cut(s)	632
Bst4CI	ACNGT	3 cut(s)	225, 646, 764
Bst6I	CTCTTC	4 cut(s)	113, 119, 494, 719
BstAFI	CTTAAG	1 cut(s)	716
BstAPI	GCANNNNNTGC	2 cut(s)	391, 612
BstBI	TTCGAA	1 cut(s)	47
BstC8I	GCNNGC	1 cut(s)	599
BstDEI	CTNAG	4 cut(s)	63, 189, 318, 618
BstDSI	CCRYGG	2 cut(s)	53, 343
BstFNI	CGCG	1 cut(s)	55
BstKTI	GATC	4 cut(s)	364, 381, 625, 639
BstMAI	GTCTC	1 cut(s)	394
BstMBI	GATC	4 cut(s)	361, 378, 622, 636
BstMWI	GCNNNNNNNGC	6 cut(s)	26, 64, 391, 603, 612, 691
BstNSI	RCATGY	1 cut(s)	454
BstUI	CGCG	1 cut(s)	55
BstV1I	GCAGC	1 cut(s)	397
BstV2I	GAAGAC	1 cut(s)	412
BstX2I	RGATCY	3 cut(s)	378, 622, 636
BstYI	RGATCY	3 cut(s)	378, 622, 636
BsuI	GTATCC	2 cut(s)	350, 479
BsuRI	GGCC	4 cut(s)	143, 440, 668, 685
BtgI	CCRYGG	2 cut(s)	53, 343
BtsIMutI	CAGTG	1 cut(s)	615
Cac8I	GCNNGC	1 cut(s)	599
CaiI	CAGNNNCTG	1 cut(s)	107
Cfr13I	GGNCC	3 cut(s)	141, 262, 650
Cfr42I	CCGCGG	1 cut(s)	56
Csp6I	GTAC	2 cut(s)	226, 238
CviAII	CATG	2 cut(s)	451, 602
CviQI	GTAC	2 cut(s)	226, 238
DdeI	CTNAG	4 cut(s)	63, 189, 318, 618
DpnI	GATC	4 cut(s)	363, 380, 624, 638
DpnII	GATC	4 cut(s)	361, 378, 622, 636
EaeI	YGGCCR	1 cut(s)	683
Eam1104I	CTCTTC	4 cut(s)	113, 119, 494, 719
EarI	CTCTTC	4 cut(s)	113, 119, 494, 719
Eco130I	CCWWGG	2 cut(s)	144, 231
Eco47I	GGWCC	2 cut(s)	262, 650
Eco88I	CYCGRG	1 cut(s)	68
EcoT14I	CCWWGG	2 cut(s)	144, 231
ErhI	CCWWGG	2 cut(s)	144, 231
FaeI	CATG	2 cut(s)	454, 605
FaiI	YATR	8 cut(s)	303, 452, 472, 474, 483, 534, 603, 738
FalI	AAGNNNNNCTT	4 cut(s)	365, 397, 428, 460
FatI	CATG	2 cut(s)	450, 601
FauI	CCCGC	1 cut(s)	25
FauNDI	CATATG	1 cut(s)	472
Fnu4HI	GCNGC	4 cut(s)	53, 56, 171, 386
Fsp4HI	GCNGC	4 cut(s)	53, 56, 171, 386
FspBI	CTAG	2 cut(s)	164, 802
GluI	GCNGC	4 cut(s)	53, 56, 171, 386
HaeIII	GGCC	4 cut(s)	143, 440, 668, 685
HapII	CCGG	1 cut(s)	265
Hin1II	CATG	2 cut(s)	454, 605
HindIII	AAGCTT	1 cut(s)	200
HinfI	GANTC	3 cut(s)	104, 297, 314
HpaII	CCGG	1 cut(s)	265
HphI	GGTGA	2 cut(s)	32, 89
Hpy166II	GTNNAC	2 cut(s)	228, 433
Hpy188I	TCNGA	1 cut(s)	190
Hpy188III	TCNNGA	5 cut(s)	70, 101, 424, 632, 640
Hpy8I	GTNNAC	2 cut(s)	228, 433
HpyAV	CCTTC	2 cut(s)	241, 737
HpyCH4III	ACNGT	3 cut(s)	225, 646, 764
HpyCH4V	TGCA	2 cut(s)	385, 615
HpyF10VI	GCNNNNNNNGC	6 cut(s)	26, 64, 391, 603, 612, 691
HpyF3I	CTNAG	4 cut(s)	63, 189, 318, 618
Hsp92II	CATG	2 cut(s)	454, 605
KspI	CCGCGG	1 cut(s)	56
Kzo9I	GATC	4 cut(s)	361, 378, 622, 636
LpnPI	CCDG	8 cut(s)	114, 143, 278, 324, 437, 445, 572, 741
Lsp1109I	GCAGC	1 cut(s)	397
LweI	GCATC	1 cut(s)	742
MaeI	CTAG	2 cut(s)	164, 802
MaeIII	GTNAC	1 cut(s)	475
MalI	GATC	4 cut(s)	363, 380, 624, 638
MboI	GATC	4 cut(s)	361, 378, 622, 636
MboII	GAAGA	7 cut(s)	130, 136, 388, 412, 511, 733, 736
MflI	RGATCY	3 cut(s)	378, 622, 636
MlsI	TGGCCA	1 cut(s)	685
MluCI	AATT	4 cut(s)	179, 257, 512, 555
MluNI	TGGCCA	1 cut(s)	685
MlyI	GAGTC	2 cut(s)	113, 323
MmeI	TCCRAC	1 cut(s)	628
Mox20I	TGGCCA	1 cut(s)	685
MscI	TGGCCA	1 cut(s)	685
MseI	TTAA	3 cut(s)	660, 690, 717
Msp20I	TGGCCA	1 cut(s)	685
MspA1I	CMGCKG	1 cut(s)	55
MspCI	CTTAAG	1 cut(s)	716
MspI	CCGG	1 cut(s)	265
MvnI	CGCG	1 cut(s)	55
MwoI	GCNNNNNNNGC	6 cut(s)	26, 64, 391, 603, 612, 691
NdeI	CATATG	1 cut(s)	472
NdeII	GATC	4 cut(s)	361, 378, 622, 636
NlaIII	CATG	2 cut(s)	454, 605
NlaIV	GGNNCC	3 cut(s)	99, 702, 731
NmuCI	GTSAC	1 cut(s)	475
NspI	RCATGY	1 cut(s)	454
NspV	TTCGAA	1 cut(s)	47
PaeR7I	CTCGAG	1 cut(s)	68
PfeI	GAWTC	1 cut(s)	297
PflMI	CCANNNNNTGG	1 cut(s)	710
PkrI	GCNGC	4 cut(s)	54, 57, 172, 387
PleI	GAGTC	2 cut(s)	112, 322
PpsI	GAGTC	2 cut(s)	112, 322
PspN4I	GGNNCC	3 cut(s)	99, 702, 731
PspPI	GGNCC	3 cut(s)	141, 262, 650
PsrI	GAACNNNNNNTAC	1 cut(s)	28
PstNI	CAGNNNCTG	1 cut(s)	107
PsuI	RGATCY	3 cut(s)	378, 622, 636
RsaI	GTAC	2 cut(s)	227, 239
RsaNI	GTAC	2 cut(s)	226, 238
SacII	CCGCGG	1 cut(s)	56
SaqAI	TTAA	3 cut(s)	660, 690, 717
SatI	GCNGC	4 cut(s)	53, 56, 171, 386
Sau3AI	GATC	4 cut(s)	361, 378, 622, 636
Sau96I	GGNCC	3 cut(s)	141, 262, 650
SchI	GAGTC	2 cut(s)	113, 323
SfaNI	GCATC	1 cut(s)	742
Sfr274I	CTCGAG	1 cut(s)	68
Sfr303I	CCGCGG	1 cut(s)	56
SfuI	TTCGAA	1 cut(s)	47
SgrBI	CCGCGG	1 cut(s)	56
SinI	GGWCC	2 cut(s)	262, 650
SlaI	CTCGAG	1 cut(s)	68
SmlI	CTYRAG	3 cut(s)	68, 695, 716
SmoI	CTYRAG	3 cut(s)	68, 695, 716
Sse9I	AATT	4 cut(s)	179, 257, 512, 555
SsiI	CCGC	4 cut(s)	18, 53, 55, 171
SspMI	CTAG	2 cut(s)	164, 802
StyI	CCWWGG	2 cut(s)	144, 231
TaaI	ACNGT	3 cut(s)	225, 646, 764
TaqI	TCGA	3 cut(s)	47, 69, 306
TasI	AATT	4 cut(s)	179, 257, 512, 555
TatI	WGTACW	1 cut(s)	225
TauI	GCSGC	3 cut(s)	55, 58, 173
TfiI	GAWTC	1 cut(s)	297
Tru1I	TTAA	3 cut(s)	660, 690, 717
Tru9I	TTAA	3 cut(s)	660, 690, 717
TscAI	CASTG	1 cut(s)	622
TseFI	GTSAC	1 cut(s)	475
TseI	GCWGC	1 cut(s)	385
Tsp45I	GTSAC	1 cut(s)	475
TspDTI	ATGAA	2 cut(s)	17, 270
TspGWI	ACGGA	2 cut(s)	21, 332
TspRI	CASTG	1 cut(s)	622
Van91I	CCANNNNNTGG	1 cut(s)	710
Vha464I	CTTAAG	1 cut(s)	716
VpaK11BI	GGWCC	2 cut(s)	262, 650
XceI	RCATGY	1 cut(s)	454
XhoI	CTCGAG	1 cut(s)	68
XspI	CTAG	2 cut(s)	164, 802

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.