Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001527

Physical Location & Seq

Genomic Coordinates Reverse (-)

2272128 .. 2272406

Gene Structure 279 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0013800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGCAGCCGGTCCATGGCATTTCTCCTCATAATTTTCGTTATCGTTGCATGGTTGATCTACTAGGCCGAGCAGGGCACTTGGAAGAAGCTGTTGATCTGGTAAAGTGCATGCCAATGAAACCCAATGATGCCATTTGCGGTACTCTCTTGTCTGCATGTCGAACCCACAAAGACGTCGAAATGGCAGCATATGCAGCTGAATATATATCAAAGTTGACCACTCAGAGAACTGGTATTCATGTGCTTCAATCAAACATATATGCATCAGCTGGGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000463 GO:0000470 GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0030312 GO:0031090 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0097159 GO:0098588 GO:0098805 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L30 Ribosomal_L30_N

Protein Analysis

92

Amino Acids

10.15

Weight (kDa)

8.42

Isoelectric Point (pI)

47.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001527)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01250 AT2G01250 AT2G44120 AT2G44120 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580
fragaria_vesca	FvH4_6g37170 FvH4_6g37320 FvH4_6g37320
malus_domestica	MD09G1160400.v1.1 MD16G1246400.v1.1 MD17G1146200.v1.1
prunus_persica	Prupe.1G073100_v2.0.a1 Prupe.3G019000_v2.0.a1
pyrus_communis	pycom09g07900 pycom16g20690
rosa_chinensis	RchiOBHm_Chr2g0149791 RchiOBHm_Chr2g0150141
rosa_laevigata	RLG00000020445 RLG00000020470 RLG00000034320
rosa_multiflora	Rmu_sc0002002.1_g000018 Rmu_sc0009445.1_g000002 Rmu_sc0018143.1_g000004 Rmu_sc0019102.1_g000006 Rmu_ssc0000020.1_g000014
rosa_roxburghii	Rroxscaffold_2G00097410 Rroxscaffold_2G00097690
rosa_rugosa	Rorug02G0416300 Rorug02G0416400 Rorug02G0416400 Rorug02G0416500 Rorug02G0419400 Rorug04G0013800
rosa_samantha	Rh2AG478100 Rh2BG487200 Rh2BG490700 Rh2CG461300 Rh2CG464300 Rh2DG496300 Rh2DG499500 Rh4BG089300
rosa_wichuraiana	Rw2G038780 Rw2G039030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	177
AciI	CCGC	1 cut(s)	138
AcyI	GRCGYC	1 cut(s)	174
AfaI	GTAC	1 cut(s)	142
AfiI	CCNNNNNNNGG	1 cut(s)	14
AgsI	TTSAA	1 cut(s)	248
AluBI	AGCT	3 cut(s)	89, 197, 269
AluI	AGCT	3 cut(s)	89, 197, 269
AoxI	GGCC	1 cut(s)	64
ApeKI	GCWGC	3 cut(s)	4, 185, 194
AspS9I	GGNCC	1 cut(s)	10
AvaII	GGWCC	1 cut(s)	10
BaeGI	GKGCMC	1 cut(s)	78
BbvI	GCAGC	3 cut(s)	16, 197, 206
BfaI	CTAG	1 cut(s)	62
BisI	GCNGC	3 cut(s)	5, 186, 195
BlsI	GCNGC	3 cut(s)	6, 187, 196
Bme18I	GGWCC	1 cut(s)	10
BmgT120I	GGNCC	1 cut(s)	10
BmsI	GCATC	2 cut(s)	118, 272
BsaHI	GRCGYC	1 cut(s)	174
BsaJI	CCNNGG	1 cut(s)	13
Bsc4I	CCNNNNNNNGG	1 cut(s)	14
Bse118I	RCCGGY	1 cut(s)	7
Bse1I	ACTGG	1 cut(s)	235
BseDI	CCNNGG	1 cut(s)	13
BseLI	CCNNNNNNNGG	1 cut(s)	14
BseMII	CTCAG	1 cut(s)	236
BseNI	ACTGG	1 cut(s)	235
BseRI	GAGGAG	1 cut(s)	15
BseSI	GKGCMC	1 cut(s)	78
BseXI	GCAGC	3 cut(s)	16, 197, 206
BseYI	CCCAGC	1 cut(s)	269
BshFI	GGCC	1 cut(s)	66
BsiSI	CCGG	1 cut(s)	8
BslI	CCNNNNNNNGG	1 cut(s)	14
BsnI	GGCC	1 cut(s)	66
Bsp1286I	GDGCHC	1 cut(s)	78
Bsp143I	GATC	2 cut(s)	55, 94
Bsp19I	CCATGG	1 cut(s)	13
BspACI	CCGC	1 cut(s)	138
BspANI	GGCC	1 cut(s)	66
BspCNI	CTCAG	1 cut(s)	235
BsrFI	RCCGGY	1 cut(s)	7
BsrI	ACTGG	1 cut(s)	235
BssAI	RCCGGY	1 cut(s)	7
BssECI	CCNNGG	1 cut(s)	13
BssMI	GATC	2 cut(s)	55, 94
BssNI	GRCGYC	1 cut(s)	174
BssT1I	CCWWGG	1 cut(s)	13
BstACI	GRCGYC	1 cut(s)	174
BstAPI	GCANNNNNTGC	1 cut(s)	191
BstC8I	GCNNGC	1 cut(s)	110
BstDEI	CTNAG	1 cut(s)	222
BstDSI	CCRYGG	1 cut(s)	13
BstKTI	GATC	2 cut(s)	58, 97
BstMBI	GATC	2 cut(s)	55, 94
BstMWI	GCNNNNNNNGC	2 cut(s)	191, 194
BstNSI	RCATGY	2 cut(s)	112, 159
BstSLI	GKGCMC	1 cut(s)	78
BstV1I	GCAGC	3 cut(s)	16, 197, 206
BsuRI	GGCC	1 cut(s)	66
BtgI	CCRYGG	1 cut(s)	13
Cac8I	GCNNGC	1 cut(s)	110
Cfr10I	RCCGGY	1 cut(s)	7
Cfr13I	GGNCC	1 cut(s)	10
Csp6I	GTAC	1 cut(s)	141
CviAII	CATG	5 cut(s)	14, 49, 109, 156, 239
CviJI	RGCY	5 cut(s)	7, 66, 89, 197, 269
CviKI_1	RGCY	5 cut(s)	7, 66, 89, 197, 269
CviQI	GTAC	1 cut(s)	141
DdeI	CTNAG	1 cut(s)	222
DpnI	GATC	2 cut(s)	57, 96
DpnII	GATC	2 cut(s)	55, 94
Eco130I	CCWWGG	1 cut(s)	13
Eco47I	GGWCC	1 cut(s)	10
EcoT14I	CCWWGG	1 cut(s)	13
EcoT22I	ATGCAT	1 cut(s)	265
ErhI	CCWWGG	1 cut(s)	13
FaeI	CATG	5 cut(s)	17, 52, 112, 159, 242
FatI	CATG	5 cut(s)	13, 48, 108, 155, 238
FauNDI	CATATG	1 cut(s)	190
Fnu4HI	GCNGC	3 cut(s)	5, 186, 195
Fsp4HI	GCNGC	3 cut(s)	5, 186, 195
FspBI	CTAG	1 cut(s)	62
GluI	GCNGC	3 cut(s)	5, 186, 195
GsaI	CCCAGC	1 cut(s)	273
HaeIII	GGCC	1 cut(s)	66
HapII	CCGG	1 cut(s)	8
Hin1I	GRCGYC	1 cut(s)	174
Hin1II	CATG	5 cut(s)	17, 52, 112, 159, 242
HincII	GTYRAC	1 cut(s)	216
HindII	GTYRAC	1 cut(s)	216
HpaII	CCGG	1 cut(s)	8
Hpy166II	GTNNAC	1 cut(s)	216
Hpy188I	TCNGA	1 cut(s)	225
Hpy8I	GTNNAC	1 cut(s)	216
Hpy99I	CGWCG	1 cut(s)	179
HpyCH4IV	ACGT	1 cut(s)	174
HpyCH4V	TGCA	6 cut(s)	4, 48, 108, 155, 194, 263
HpyF10VI	GCNNNNNNNGC	2 cut(s)	191, 194
HpyF3I	CTNAG	1 cut(s)	222
HpySE526I	ACGT	1 cut(s)	174
Hsp92I	GRCGYC	1 cut(s)	174
Hsp92II	CATG	5 cut(s)	17, 52, 112, 159, 242
Kzo9I	GATC	2 cut(s)	55, 94
LpnPI	CCDG	5 cut(s)	21, 57, 83, 216, 255
Lsp1109I	GCAGC	3 cut(s)	16, 197, 206
LweI	GCATC	2 cut(s)	118, 272
MaeI	CTAG	1 cut(s)	62
MaeII	ACGT	1 cut(s)	174
MalI	GATC	2 cut(s)	57, 96
MboI	GATC	2 cut(s)	55, 94
MboII	GAAGA	1 cut(s)	95
MhlI	GDGCHC	1 cut(s)	78
MluCI	AATT	1 cut(s)	31
MnlI	CCTC	1 cut(s)	36
Mph1103I	ATGCAT	1 cut(s)	265
MslI	CAYNNNNRTG	1 cut(s)	113
MspA1I	CMGCKG	2 cut(s)	197, 269
MspI	CCGG	1 cut(s)	8
MwoI	GCNNNNNNNGC	2 cut(s)	191, 194
NcoI	CCATGG	1 cut(s)	13
NdeI	CATATG	1 cut(s)	190
NdeII	GATC	2 cut(s)	55, 94
NlaIII	CATG	5 cut(s)	17, 52, 112, 159, 242
NmeAIII	GCCGAG	1 cut(s)	92
NsiI	ATGCAT	1 cut(s)	265
NspI	RCATGY	2 cut(s)	112, 159
PaeI	GCATGC	1 cut(s)	112
PkrI	GCNGC	3 cut(s)	6, 187, 196
PspFI	CCCAGC	1 cut(s)	269
PspPI	GGNCC	1 cut(s)	10
PvuII	CAGCTG	2 cut(s)	197, 269
RsaI	GTAC	1 cut(s)	142
RsaNI	GTAC	1 cut(s)	141
RseI	CAYNNNNRTG	1 cut(s)	113
SatI	GCNGC	3 cut(s)	5, 186, 195
Sau3AI	GATC	2 cut(s)	55, 94
Sau96I	GGNCC	1 cut(s)	10
SduI	GDGCHC	1 cut(s)	78
SetI	ASST	4 cut(s)	91, 177, 199, 271
SfaNI	GCATC	2 cut(s)	118, 272
SinI	GGWCC	1 cut(s)	10
SmiMI	CAYNNNNRTG	1 cut(s)	113
SphI	GCATGC	1 cut(s)	112
Sse9I	AATT	1 cut(s)	31
SsiI	CCGC	1 cut(s)	138
SspMI	CTAG	1 cut(s)	62
StyI	CCWWGG	1 cut(s)	13
TaiI	ACGT	1 cut(s)	177
TaqI	TCGA	2 cut(s)	160, 177
TasI	AATT	1 cut(s)	31
TseI	GCWGC	3 cut(s)	4, 185, 194
TspDTI	ATGAA	2 cut(s)	131, 227
VpaK11BI	GGWCC	1 cut(s)	10
XceI	RCATGY	2 cut(s)	112, 159
XspI	CTAG	1 cut(s)	62
ZraI	GACGTC	1 cut(s)	175
Zsp2I	ATGCAT	1 cut(s)	265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.