Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001527

Physical Location & Seq

Genomic Coordinates Reverse (-)

62431297 .. 62453775

Gene Structure 22479 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG461300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGGATAAAGAATCTATGCTACCACTGCCGGCACTCATATGGCAATGTGGCATAAAAGACATCAAAAAAACGTCTCCAACATTGATTTTAGGTAGCAGAAGAGCTTTACCAATCTGGTATAAACTGGATGTTGTGAGTGCTGGAAAGAATTTTACACAGATCAGGAAGGCAATTACGGCGGGATTTTTCTTCCATGATGCTAGAAAGGACCCTCAAGAGGGGTATAGAACCTTAGTGGAGAACCAGCCAGTTTATATCCATCCAAGCAGTGCGCTCTTCCAGAGACAACCAGATTGGATCATCTACCATGAGTTGGTTATGACTACGAAGGAGTATATGCGTGAGGTAACCGTCGTTGATCCCAAATGGCTTGTGGAACTAGCACCCAGCCCTCTCAACCCTCACCATTCGAAGCCGCGGCGACCTCAGCTCGAGATGGGTGAAGCAGTCAAGGTTGTGGTTCCAGAGTCTGTCCTAAAGAAGAGGAAGAGAGAGGAGGAATGGGCCTTGGCAAAGAAGCAGGGGCTAGAAGCTGCCAAGAAATTGAACTCTGAGAATAGGAAGCTTATTTACAACAAATCCAAACAGTACACCAAGGAGTACGCAGAGAAGGACAATGAATTGGTCCGGTTGAAGCGTGAAGCAAGGCTGAAAGGAGGATTCTATGTCGAGCCAGAGTCTAAGCTCTTGTTTATCATTCGTATCCGTGGTATCAATGCCATTGATCCAAAGACAAAGAAGATCTTGCAGCTTTTGCGTTTGAGACAGATATTCAATGGTGTCTTCCTGAAAGTAAACAAGGCCACCTTGAACATGCTTCACAGGGTTGAGCCATATGTCACTTATGGATACCCCAACTTGAAGAGTGTCAAGGAATTGATTTACAAGAGGGGTTATGGCAAGTTGAACAAGCAGAGAATTGCCTTGACTGATAACTCTGTTGTTGAACAGGGTTTGGGCAAGCATGGCATTATCTGCACTGAGGATCTTATTCATGAGATCTTGACAGTTGGATCTCATTTTAAGGAGGCCAACAACTTTCTGTGGCCATTTAAGCTCAAGGCACCATTGGGTGGTCTTAAGAAGAAGAGGAACCATTATGTTGAAGGTGGAGATGCTGGAAACCGTGAGAACTACATCAATGAGCTTATTAGGAGAATGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L30 Ribosomal_L30_N

Protein Analysis

388

Amino Acids

44.98

Weight (kDa)

9.86

Isoelectric Point (pI)

39.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OB_NTP_bind	PF07717	54 - 130	2.7e-26	Oligonucleotide/oligosaccharide-binding (OB)-fold
Ribosomal_L30_N	PF08079	154 - 225	7.3e-22	Ribosomal L30 N-terminal domain
Ribosomal_L30	PF00327	230 - 280	3.1e-17	Ribosomal protein L30p/L7e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001527)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01250 AT2G01250 AT2G44120 AT2G44120 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580
fragaria_vesca	FvH4_6g37170 FvH4_6g37320 FvH4_6g37320
malus_domestica	MD09G1160400.v1.1 MD16G1246400.v1.1 MD17G1146200.v1.1
prunus_persica	Prupe.1G073100_v2.0.a1 Prupe.3G019000_v2.0.a1
pyrus_communis	pycom09g07900 pycom16g20690
rosa_chinensis	RchiOBHm_Chr2g0149791 RchiOBHm_Chr2g0150141
rosa_laevigata	RLG00000020445 RLG00000020470 RLG00000034320
rosa_multiflora	Rmu_sc0002002.1_g000018 Rmu_sc0009445.1_g000002 Rmu_sc0018143.1_g000004 Rmu_sc0019102.1_g000006 Rmu_ssc0000020.1_g000014
rosa_roxburghii	Rroxscaffold_2G00097410 Rroxscaffold_2G00097690
rosa_rugosa	Rorug02G0416300 Rorug02G0416400 Rorug02G0416400 Rorug02G0416500 Rorug02G0419400 Rorug04G0013800
rosa_samantha	Rh2AG478100 Rh2BG487200 Rh2BG490700 Rh2CG461300 Rh2CG464300 Rh2DG496300 Rh2DG499500 Rh4BG089300
rosa_wichuraiana	Rw2G038780 Rw2G039030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1063
AccB7I	CCANNNNNTGG	2 cut(s)	313, 1073
AccII	CGCG	1 cut(s)	418
AciI	CCGC	3 cut(s)	179, 416, 418
AclWI	GGATC	5 cut(s)	305, 353, 719, 993, 1021
AcoI	YGGCCR	1 cut(s)	1046
AcsI	RAATTY	1 cut(s)	148
AfaI	GTAC	2 cut(s)	590, 602
AfiI	CCNNNNNNNGG	4 cut(s)	217, 218, 313, 1073
AflII	CTTAAG	1 cut(s)	1079
AgsI	TTSAA	8 cut(s)	547, 634, 775, 811, 862, 907, 947, 1106
AluBI	AGCT	8 cut(s)	104, 430, 533, 565, 685, 751, 1057, 1147
AluI	AGCT	8 cut(s)	104, 430, 533, 565, 685, 751, 1057, 1147
Alw26I	GTCTC	3 cut(s)	78, 277, 757
AlwI	GGATC	5 cut(s)	305, 353, 719, 993, 1021
AlwNI	CAGNNNCTG	1 cut(s)	470
Ama87I	CYCGRG	1 cut(s)	431
AoxI	GGCC	4 cut(s)	504, 801, 1029, 1046
ApeKI	GCWGC	2 cut(s)	533, 748
ApoI	RAATTY	1 cut(s)	148
AspLEI	GCGC	1 cut(s)	274
AspS9I	GGNCC	3 cut(s)	208, 504, 625
AsuHPI	GGTGA	2 cut(s)	395, 452
AsuII	TTCGAA	1 cut(s)	410
AvaI	CYCGRG	1 cut(s)	431
AvaII	GGWCC	2 cut(s)	208, 625
BalI	TGGCCA	1 cut(s)	1048
BanI	GGYRCC	1 cut(s)	1063
BarI	GAAGNNNNNNTAC	2 cut(s)	554, 586
BbsI	GAAGAC	1 cut(s)	775
BbvCI	CCTCAGC	1 cut(s)	426
BbvI	GCAGC	2 cut(s)	520, 760
BccI	CCATC	2 cut(s)	267, 430
BceAI	ACGGC	1 cut(s)	192
BciVI	GTATCC	2 cut(s)	713, 842
BcoDI	GTCTC	3 cut(s)	78, 277, 757
BfaI	CTAG	4 cut(s)	201, 380, 527, 1165
BfrI	CTTAAG	1 cut(s)	1079
BfuI	GTATCC	2 cut(s)	713, 842
BglII	AGATCT	2 cut(s)	741, 999
BisI	GCNGC	4 cut(s)	416, 419, 534, 749
BlsI	GCNGC	4 cut(s)	417, 420, 535, 750
Bme18I	GGWCC	2 cut(s)	208, 625
BmeT110I	CYCGRG	1 cut(s)	431
BmgT120I	GGNCC	3 cut(s)	208, 504, 625
BmiI	GGNNCC	4 cut(s)	210, 462, 1065, 1094
BmsI	GCATC	2 cut(s)	187, 1105
BpiI	GAAGAC	1 cut(s)	775
Bpu10I	CCTNAGC	1 cut(s)	426
Bpu14I	TTCGAA	1 cut(s)	410
BpuEI	CTTGAG	2 cut(s)	198, 1043
BsaJI	CCNNGG	4 cut(s)	416, 507, 594, 706
BsaWI	WCCGGW	1 cut(s)	627
Bsc4I	CCNNNNNNNGG	4 cut(s)	217, 218, 313, 1073
Bse118I	RCCGGY	1 cut(s)	28
Bse1I	ACTGG	2 cut(s)	129, 248
Bse3DI	GCAATG	1 cut(s)	50
BseDI	CCNNGG	4 cut(s)	416, 507, 594, 706
BseGI	GGATG	2 cut(s)	133, 259
BseLI	CCNNNNNNNGG	4 cut(s)	217, 218, 313, 1073
BseMI	GCAATG	1 cut(s)	50
BseMII	CTCAG	3 cut(s)	440, 543, 972
BseNI	ACTGG	2 cut(s)	129, 248
BseRI	GAGGAG	1 cut(s)	509
BseXI	GCAGC	2 cut(s)	520, 760
BseYI	CCCAGC	1 cut(s)	386
BsgI	GTGCAG	1 cut(s)	961
Bsh1236I	CGCG	1 cut(s)	418
BshFI	GGCC	4 cut(s)	506, 803, 1031, 1048
BshNI	GGYRCC	1 cut(s)	1063
BsiHKCI	CYCGRG	1 cut(s)	431
BsiSI	CCGG	2 cut(s)	29, 628
BslI	CCNNNNNNNGG	4 cut(s)	217, 218, 313, 1073
BsmAI	GTCTC	3 cut(s)	78, 277, 757
BsmBI	CGTCTC	1 cut(s)	78
BsnI	GGCC	4 cut(s)	506, 803, 1031, 1048
BsoBI	CYCGRG	1 cut(s)	431
Bsp119I	TTCGAA	1 cut(s)	410
Bsp143I	GATC	8 cut(s)	159, 297, 358, 724, 741, 985, 999, 1013
BspACI	CCGC	3 cut(s)	179, 416, 418
BspANI	GGCC	4 cut(s)	506, 803, 1031, 1048
BspCNI	CTCAG	3 cut(s)	439, 544, 973
BspFNI	CGCG	1 cut(s)	418
BspHI	TCATGA	1 cut(s)	994
BspLI	GGNNCC	4 cut(s)	210, 462, 1065, 1094
BspPI	GGATC	5 cut(s)	305, 353, 719, 993, 1021
BspQI	GCTCTTC	2 cut(s)	94, 281
BspT104I	TTCGAA	1 cut(s)	410
BspT107I	GGYRCC	1 cut(s)	1063
BspTI	CTTAAG	1 cut(s)	1079
BsrDI	GCAATG	1 cut(s)	50
BsrFI	RCCGGY	1 cut(s)	28
BsrI	ACTGG	2 cut(s)	129, 248
BssAI	RCCGGY	1 cut(s)	28
BssECI	CCNNGG	4 cut(s)	416, 507, 594, 706
BssMI	GATC	8 cut(s)	159, 297, 358, 724, 741, 985, 999, 1013
BssT1I	CCWWGG	2 cut(s)	507, 594
Bst4CI	ACNGT	4 cut(s)	352, 588, 1009, 1127
Bst6I	CTCTTC	6 cut(s)	94, 281, 476, 482, 857, 1082
BstAFI	CTTAAG	1 cut(s)	1079
BstAPI	GCANNNNNTGC	2 cut(s)	754, 975
BstBI	TTCGAA	1 cut(s)	410
BstC8I	GCNNGC	2 cut(s)	30, 962
BstDEI	CTNAG	5 cut(s)	232, 426, 552, 681, 981
BstDSI	CCRYGG	2 cut(s)	416, 706
BstEII	GGTNACC	1 cut(s)	346
BstF5I	GGATG	2 cut(s)	133, 259
BstFNI	CGCG	1 cut(s)	418
BstHHI	GCGC	1 cut(s)	274
BstKTI	GATC	8 cut(s)	162, 300, 361, 727, 744, 988, 1002, 1016
BstMAI	GTCTC	3 cut(s)	78, 277, 757
BstMBI	GATC	8 cut(s)	159, 297, 358, 724, 741, 985, 999, 1013
BstMWI	GCNNNNNNNGC	7 cut(s)	25, 176, 427, 754, 966, 975, 1054
BstNSI	RCATGY	1 cut(s)	817
BstPI	GGTNACC	1 cut(s)	346
BstUI	CGCG	1 cut(s)	418
BstV1I	GCAGC	2 cut(s)	520, 760
BstV2I	GAAGAC	1 cut(s)	775
BstX2I	RGATCY	4 cut(s)	741, 985, 999, 1013
BstYI	RGATCY	4 cut(s)	741, 985, 999, 1013
BsuI	GTATCC	2 cut(s)	713, 842
BsuRI	GGCC	4 cut(s)	506, 803, 1031, 1048
BtgI	CCRYGG	2 cut(s)	416, 706
BtsCI	GGATG	2 cut(s)	133, 259
BtsI	GCAGTG	2 cut(s)	23, 274
BtsIMutI	CAGTG	3 cut(s)	23, 274, 978
Cac8I	GCNNGC	2 cut(s)	30, 962
CaiI	CAGNNNCTG	1 cut(s)	470
CciI	TCATGA	1 cut(s)	994
CfoI	GCGC	1 cut(s)	274
Cfr10I	RCCGGY	1 cut(s)	28
Cfr13I	GGNCC	3 cut(s)	208, 504, 625
Cfr42I	CCGCGG	1 cut(s)	419
Csp6I	GTAC	2 cut(s)	589, 601
CviAII	CATG	5 cut(s)	194, 308, 814, 965, 995
CviQI	GTAC	2 cut(s)	589, 601
DdeI	CTNAG	5 cut(s)	232, 426, 552, 681, 981
DpnI	GATC	8 cut(s)	161, 299, 360, 726, 743, 987, 1001, 1015
DpnII	GATC	8 cut(s)	159, 297, 358, 724, 741, 985, 999, 1013
EaeI	YGGCCR	1 cut(s)	1046
Eam1104I	CTCTTC	6 cut(s)	94, 281, 476, 482, 857, 1082
EarI	CTCTTC	6 cut(s)	94, 281, 476, 482, 857, 1082
Eco130I	CCWWGG	2 cut(s)	507, 594
Eco47I	GGWCC	2 cut(s)	208, 625
Eco88I	CYCGRG	1 cut(s)	431
Eco91I	GGTNACC	1 cut(s)	346
EcoO109I	RGGNCCY	1 cut(s)	208
EcoO65I	GGTNACC	1 cut(s)	346
EcoT14I	CCWWGG	2 cut(s)	507, 594
ErhI	CCWWGG	2 cut(s)	507, 594
Esp3I	CGTCTC	1 cut(s)	78
FaeI	CATG	5 cut(s)	197, 311, 817, 968, 998
FalI	AAGNNNNNCTT	4 cut(s)	728, 760, 791, 823
FatI	CATG	5 cut(s)	193, 307, 813, 964, 994
FauI	CCCGC	1 cut(s)	172
FauNDI	CATATG	2 cut(s)	38, 835
Fnu4HI	GCNGC	4 cut(s)	416, 419, 534, 749
FokI	GGATG	2 cut(s)	140, 246
Fsp4HI	GCNGC	4 cut(s)	416, 419, 534, 749
FspBI	CTAG	4 cut(s)	201, 380, 527, 1165
GlaI	GCGC	1 cut(s)	273
GluI	GCNGC	4 cut(s)	416, 419, 534, 749
GsaI	CCCAGC	1 cut(s)	390
HaeIII	GGCC	4 cut(s)	506, 803, 1031, 1048
HapII	CCGG	2 cut(s)	29, 628
HhaI	GCGC	1 cut(s)	274
Hin1II	CATG	5 cut(s)	197, 311, 817, 968, 998
Hin6I	GCGC	1 cut(s)	272
HinP1I	GCGC	1 cut(s)	272
HindIII	AAGCTT	1 cut(s)	563
HinfI	GANTC	4 cut(s)	11, 467, 660, 677
HpaII	CCGG	2 cut(s)	29, 628
HphI	GGTGA	2 cut(s)	395, 452
Hpy166II	GTNNAC	2 cut(s)	591, 796
Hpy188I	TCNGA	1 cut(s)	553
Hpy188III	TCNNGA	8 cut(s)	163, 215, 280, 433, 464, 787, 995, 1003
Hpy8I	GTNNAC	2 cut(s)	591, 796
Hpy99I	CGWCG	1 cut(s)	356
HpyAV	CCTTC	4 cut(s)	160, 322, 604, 1100
HpyCH4III	ACNGT	4 cut(s)	352, 588, 1009, 1127
HpyCH4IV	ACGT	1 cut(s)	71
HpyCH4V	TGCA	2 cut(s)	748, 978
HpyF10VI	GCNNNNNNNGC	7 cut(s)	25, 176, 427, 754, 966, 975, 1054
HpyF3I	CTNAG	5 cut(s)	232, 426, 552, 681, 981
HpySE526I	ACGT	1 cut(s)	71
Hsp92II	CATG	5 cut(s)	197, 311, 817, 968, 998
HspAI	GCGC	1 cut(s)	272
KroI	GCCGGC	1 cut(s)	28
KroNI	GCCGGC	1 cut(s)	30
KspI	CCGCGG	1 cut(s)	419
Kzo9I	GATC	8 cut(s)	159, 297, 358, 724, 741, 985, 999, 1013
LguI	GCTCTTC	2 cut(s)	94, 281
Lsp1109I	GCAGC	2 cut(s)	520, 760
LweI	GCATC	2 cut(s)	187, 1105
MaeI	CTAG	4 cut(s)	201, 380, 527, 1165
MaeII	ACGT	1 cut(s)	71
MaeIII	GTNAC	2 cut(s)	346, 838
MalI	GATC	8 cut(s)	161, 299, 360, 726, 743, 987, 1001, 1015
MboI	GATC	8 cut(s)	159, 297, 358, 724, 741, 985, 999, 1013
MflI	RGATCY	4 cut(s)	741, 985, 999, 1013
MlsI	TGGCCA	1 cut(s)	1048
MluCI	AATT	6 cut(s)	148, 171, 542, 620, 875, 918
MluNI	TGGCCA	1 cut(s)	1048
MlyI	GAGTC	2 cut(s)	476, 686
MmeI	TCCRAC	2 cut(s)	101, 991
Mox20I	TGGCCA	1 cut(s)	1048
MroNI	GCCGGC	1 cut(s)	28
MscI	TGGCCA	1 cut(s)	1048
MseI	TTAA	3 cut(s)	1023, 1053, 1080
MslI	CAYNNNNRTG	1 cut(s)	37
Msp20I	TGGCCA	1 cut(s)	1048
MspA1I	CMGCKG	1 cut(s)	418
MspCI	CTTAAG	1 cut(s)	1079
MspI	CCGG	2 cut(s)	29, 628
MvnI	CGCG	1 cut(s)	418
MwoI	GCNNNNNNNGC	7 cut(s)	25, 176, 427, 754, 966, 975, 1054
NaeI	GCCGGC	1 cut(s)	30
NdeI	CATATG	2 cut(s)	38, 835
NdeII	GATC	8 cut(s)	159, 297, 358, 724, 741, 985, 999, 1013
NgoMIV	GCCGGC	1 cut(s)	28
NlaIII	CATG	5 cut(s)	197, 311, 817, 968, 998
NlaIV	GGNNCC	4 cut(s)	210, 462, 1065, 1094
NmuCI	GTSAC	1 cut(s)	838
NspI	RCATGY	1 cut(s)	817
NspV	TTCGAA	1 cut(s)	410
PaeR7I	CTCGAG	1 cut(s)	431
PagI	TCATGA	1 cut(s)	994
PciSI	GCTCTTC	2 cut(s)	94, 281
PdiI	GCCGGC	1 cut(s)	30
PfeI	GAWTC	2 cut(s)	11, 660
PflMI	CCANNNNNTGG	2 cut(s)	313, 1073
PkrI	GCNGC	4 cut(s)	417, 420, 535, 750
PleI	GAGTC	2 cut(s)	475, 685
PpsI	GAGTC	2 cut(s)	475, 685
PpuMI	RGGWCCY	1 cut(s)	208
Psp5II	RGGWCCY	1 cut(s)	208
PspEI	GGTNACC	1 cut(s)	346
PspFI	CCCAGC	1 cut(s)	386
PspN4I	GGNNCC	4 cut(s)	210, 462, 1065, 1094
PspPI	GGNCC	3 cut(s)	208, 504, 625
PspPPI	RGGWCCY	1 cut(s)	208
PstNI	CAGNNNCTG	1 cut(s)	470
PsuI	RGATCY	4 cut(s)	741, 985, 999, 1013
RsaI	GTAC	2 cut(s)	590, 602
RsaNI	GTAC	2 cut(s)	589, 601
RseI	CAYNNNNRTG	1 cut(s)	37
SacII	CCGCGG	1 cut(s)	419
SapI	GCTCTTC	2 cut(s)	94, 281
SaqAI	TTAA	3 cut(s)	1023, 1053, 1080
SatI	GCNGC	4 cut(s)	416, 419, 534, 749
Sau3AI	GATC	8 cut(s)	159, 297, 358, 724, 741, 985, 999, 1013
Sau96I	GGNCC	3 cut(s)	208, 504, 625
SchI	GAGTC	2 cut(s)	476, 686
SfaNI	GCATC	2 cut(s)	187, 1105
Sfr274I	CTCGAG	1 cut(s)	431
Sfr303I	CCGCGG	1 cut(s)	419
SfuI	TTCGAA	1 cut(s)	410
SgrBI	CCGCGG	1 cut(s)	419
SinI	GGWCC	2 cut(s)	208, 625
SlaI	CTCGAG	1 cut(s)	431
SmiMI	CAYNNNNRTG	1 cut(s)	37
SmlI	CTYRAG	4 cut(s)	213, 431, 1058, 1079
SmoI	CTYRAG	4 cut(s)	213, 431, 1058, 1079
Sse9I	AATT	6 cut(s)	148, 171, 542, 620, 875, 918
SsiI	CCGC	3 cut(s)	179, 416, 418
SspMI	CTAG	4 cut(s)	201, 380, 527, 1165
StyI	CCWWGG	2 cut(s)	507, 594
TaaI	ACNGT	4 cut(s)	352, 588, 1009, 1127
TaiI	ACGT	1 cut(s)	74
TaqI	TCGA	3 cut(s)	410, 432, 669
TasI	AATT	6 cut(s)	148, 171, 542, 620, 875, 918
TatI	WGTACW	1 cut(s)	588
TauI	GCSGC	2 cut(s)	418, 421
TfiI	GAWTC	2 cut(s)	11, 660
Tru1I	TTAA	3 cut(s)	1023, 1053, 1080
Tru9I	TTAA	3 cut(s)	1023, 1053, 1080
TscAI	CASTG	3 cut(s)	30, 274, 985
TseFI	GTSAC	1 cut(s)	838
TseI	GCWGC	2 cut(s)	533, 748
Tsp45I	GTSAC	1 cut(s)	838
TspDTI	ATGAA	2 cut(s)	633, 983
TspGWI	ACGGA	1 cut(s)	695
TspRI	CASTG	3 cut(s)	30, 274, 985
Van91I	CCANNNNNTGG	2 cut(s)	313, 1073
Vha464I	CTTAAG	1 cut(s)	1079
VpaK11BI	GGWCC	2 cut(s)	208, 625
XapI	RAATTY	1 cut(s)	148
XceI	RCATGY	1 cut(s)	817
XcmI	CCANNNNNNNNNTGG	1 cut(s)	370
XhoI	CTCGAG	1 cut(s)	431
XspI	CTAG	4 cut(s)	201, 380, 527, 1165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.