Rmu_sc0002002.1_g000018

60S ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002002.1
OG0001527
Physical Location & Seq
Reverse (-)
67078 .. 68301
1224 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002002.1_g000018.1.cds

Sequence Viewer

Length: 624 bp
atgtatgccagagagatgggcgaagaagttaagggagcagtcgtggttccggaatcagttttgaagaaaacaaagagggcagaggaatggggtctggcaaagaaggctaagaaatatgcacaggagtatgatgaacagcaaaaggagttgatccggttgaagcgtgaggcgaagctgaagggagggtttcatgtcaacccagaagccaagctgctgttcattgtcaggatacgtggtatcaatgccattgacccaaaaactaagaagattctccagcttctgcgtttgagacaggtaaaacatcggtatcctaacttgaagagtgtcaaggaattaatctacaagaggggctatggaaagctcaacaagcagagaactgctttgaccgacaattctgttgttgaacaggctttaggtaagcatggaatcatttgcgtggaggaccttatccatgagatcttgactgttggatcccatttcaaggaggcaaacaacttcctctggccatttaagctcaaggcaccccttggtggtttaaagaagaagagaaagcactatgttgagggtgttgatactggaaatcgcgaagattacatcaatgagctcatcaggaggatgaattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
RVT_3 Ribosomal_L30 Ribosomal_L30_N

Protein Analysis

207

Amino Acids

24.0

Weight (kDa)

9.95

Isoelectric Point (pI)

34.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 520
AccII CGCG 1 cut(s) 585
AccIII TCCGGA 1 cut(s) 49
AclWI GGATC 3 cut(s) 145, 465, 478
AcoI YGGCCR 1 cut(s) 503
AcuI CTGAAG 1 cut(s) 197
AfiI CCNNNNNNNGG 2 cut(s) 481, 530
AgsI TTSAA 5 cut(s) 64, 160, 319, 404, 481
AjuI GAANNNNNNNTTGG 2 cut(s) 200, 232
AluBI AGCT 6 cut(s) 175, 211, 277, 361, 514, 604
AluI AGCT 6 cut(s) 175, 211, 277, 361, 514, 604
Alw21I GWGCWC 1 cut(s) 606
Alw26I GTCTC 1 cut(s) 283
AlwI GGATC 3 cut(s) 145, 465, 478
AlwNI CAGNNNCTG 1 cut(s) 280
Aor13HI TCCGGA 1 cut(s) 49
AoxI GGCC 1 cut(s) 503
ApeKI GCWGC 1 cut(s) 211
AseI ATTAAT 1 cut(s) 335
AspS9I GGNCC 1 cut(s) 442
AvaII GGWCC 1 cut(s) 442
BaeI ACNNNNGTAYC 2 cut(s) 290, 323
BalI TGGCCA 1 cut(s) 505
BamHI GGATCC 1 cut(s) 470
BanI GGYRCC 1 cut(s) 520
BanII GRGCYC 1 cut(s) 606
Bbv12I GWGCWC 1 cut(s) 606
BbvI GCAGC 1 cut(s) 198
BccI CCATC 1 cut(s) 10
BciVI GTATCC 2 cut(s) 222, 318
BcoDI GTCTC 1 cut(s) 283
BfuI GTATCC 2 cut(s) 222, 318
BglII AGATCT 1 cut(s) 456
BisI GCNGC 1 cut(s) 212
BlsI GCNGC 1 cut(s) 213
Bme18I GGWCC 1 cut(s) 442
BmgT120I GGNCC 1 cut(s) 442
BmiI GGNNCC 3 cut(s) 48, 472, 522
BpmI CTGGAG 1 cut(s) 257
BpuEI CTTGAG 1 cut(s) 500
BsaAI YACGTR 1 cut(s) 233
BsaJI CCNNGG 1 cut(s) 526
BsaWI WCCGGW 2 cut(s) 49, 153
BsaXI ACNNNNNCTCC 2 cut(s) 27, 57
Bsc4I CCNNNNNNNGG 2 cut(s) 481, 530
Bse1I ACTGG 1 cut(s) 580
BseAI TCCGGA 1 cut(s) 49
BseDI CCNNGG 1 cut(s) 526
BseGI GGATG 1 cut(s) 621
BseLI CCNNNNNNNGG 2 cut(s) 481, 530
BseNI ACTGG 1 cut(s) 580
BseXI GCAGC 1 cut(s) 198
Bsh1236I CGCG 1 cut(s) 585
BshFI GGCC 1 cut(s) 505
BshNI GGYRCC 1 cut(s) 520
BsiHKAI GWGCWC 1 cut(s) 606
BsiSI CCGG 2 cut(s) 50, 154
BslI CCNNNNNNNGG 2 cut(s) 481, 530
BsmAI GTCTC 1 cut(s) 283
BsnI GGCC 1 cut(s) 505
Bsp1286I GDGCHC 1 cut(s) 606
Bsp13I TCCGGA 1 cut(s) 49
Bsp143I GATC 3 cut(s) 150, 456, 470
Bsp68I TCGCGA 1 cut(s) 585
BspANI GGCC 1 cut(s) 505
BspEI TCCGGA 1 cut(s) 49
BspFNI CGCG 1 cut(s) 585
BspLI GGNNCC 3 cut(s) 48, 472, 522
BspPI GGATC 3 cut(s) 145, 465, 478
BspT107I GGYRCC 1 cut(s) 520
BsrI ACTGG 1 cut(s) 580
BssECI CCNNGG 1 cut(s) 526
BssMI GATC 3 cut(s) 150, 456, 470
BssT1I CCWWGG 1 cut(s) 526
Bst4CI ACNGT 1 cut(s) 466
Bst6I CTCTTC 2 cut(s) 314, 539
BstBAI YACGTR 1 cut(s) 233
BstDEI CTNAG 2 cut(s) 108, 261
BstF5I GGATG 1 cut(s) 621
BstFNI CGCG 1 cut(s) 585
BstKTI GATC 3 cut(s) 153, 459, 473
BstMAI GTCTC 1 cut(s) 283
BstMBI GATC 3 cut(s) 150, 456, 470
BstMWI GCNNNNNNNGC 3 cut(s) 104, 367, 511
BstUI CGCG 1 cut(s) 585
BstV1I GCAGC 1 cut(s) 198
BstX2I RGATCY 2 cut(s) 456, 470
BstXI CCANNNNNNTGG 1 cut(s) 16
BstYI RGATCY 2 cut(s) 456, 470
BsuI GTATCC 2 cut(s) 222, 318
BsuRI GGCC 1 cut(s) 505
BtsCI GGATG 1 cut(s) 621
BtuMI TCGCGA 1 cut(s) 585
CaiI CAGNNNCTG 1 cut(s) 280
Cfr13I GGNCC 1 cut(s) 442
CviAII CATG 3 cut(s) 191, 422, 452
DdeI CTNAG 2 cut(s) 108, 261
DpnI GATC 3 cut(s) 152, 458, 472
DpnII GATC 3 cut(s) 150, 456, 470
DraI TTTAAA 1 cut(s) 537
EaeI YGGCCR 1 cut(s) 503
Eam1104I CTCTTC 2 cut(s) 314, 539
EarI CTCTTC 2 cut(s) 314, 539
Ecl136II GAGCTC 1 cut(s) 604
Eco130I CCWWGG 1 cut(s) 526
Eco24I GRGCYC 1 cut(s) 606
Eco47I GGWCC 1 cut(s) 442
Eco53kI GAGCTC 1 cut(s) 604
Eco57I CTGAAG 1 cut(s) 197
EcoICRI GAGCTC 1 cut(s) 604
EcoO109I RGGNCCY 1 cut(s) 442
EcoT14I CCWWGG 1 cut(s) 526
EcoT38I GRGCYC 1 cut(s) 606
ErhI CCWWGG 1 cut(s) 526
FaeI CATG 3 cut(s) 194, 425, 455
FaiI YATR 8 cut(s) 6, 117, 129, 192, 354, 423, 453, 558
FatI CATG 3 cut(s) 190, 421, 451
Fnu4HI GCNGC 1 cut(s) 212
FriOI GRGCYC 1 cut(s) 606
Fsp4HI GCNGC 1 cut(s) 212
GluI GCNGC 1 cut(s) 212
GsuI CTGGAG 1 cut(s) 257
HaeIII GGCC 1 cut(s) 505
HapII CCGG 2 cut(s) 50, 154
Hin1II CATG 3 cut(s) 194, 425, 455
HincII GTYRAC 1 cut(s) 196
HindII GTYRAC 1 cut(s) 196
HinfI GANTC 3 cut(s) 53, 268, 426
HpaII CCGG 2 cut(s) 50, 154
Hpy166II GTNNAC 1 cut(s) 196
Hpy188III TCNNGA 5 cut(s) 50, 226, 460, 584, 610
Hpy8I GTNNAC 1 cut(s) 196
HpyAV CCTTC 2 cut(s) 97, 172
HpyCH4III ACNGT 1 cut(s) 466
HpyCH4IV ACGT 1 cut(s) 232
HpyCH4V TGCA 1 cut(s) 119
HpyF10VI GCNNNNNNNGC 3 cut(s) 104, 367, 511
HpyF3I CTNAG 2 cut(s) 108, 261
HpySE526I ACGT 1 cut(s) 232
Hsp92II CATG 3 cut(s) 194, 425, 455
Kpn2I TCCGGA 1 cut(s) 49
Kzo9I GATC 3 cut(s) 150, 456, 470
LmnI GCTCC 1 cut(s) 35
Lsp1109I GCAGC 1 cut(s) 198
MaeII ACGT 1 cut(s) 232
MalI GATC 3 cut(s) 152, 458, 472
MboI GATC 3 cut(s) 150, 456, 470
MboII GAAGA 7 cut(s) 35, 76, 277, 331, 553, 556, 599
MflI RGATCY 2 cut(s) 456, 470
MhlI GDGCHC 1 cut(s) 606
MlsI TGGCCA 1 cut(s) 505
MluCI AATT 3 cut(s) 332, 391, 619
MluNI TGGCCA 1 cut(s) 505
MmeI TCCRAC 1 cut(s) 448
Mox20I TGGCCA 1 cut(s) 505
MroI TCCGGA 1 cut(s) 49
MscI TGGCCA 1 cut(s) 505
MseI TTAA 4 cut(s) 30, 335, 510, 536
MslI CAYNNNNRTG 1 cut(s) 434
Msp20I TGGCCA 1 cut(s) 505
MspI CCGG 2 cut(s) 50, 154
MvnI CGCG 1 cut(s) 585
MwoI GCNNNNNNNGC 3 cut(s) 104, 367, 511
NdeII GATC 3 cut(s) 150, 456, 470
NlaIII CATG 3 cut(s) 194, 425, 455
NlaIV GGNNCC 3 cut(s) 48, 472, 522
NruI TCGCGA 1 cut(s) 585
PfeI GAWTC 3 cut(s) 53, 268, 426
PkrI GCNGC 1 cut(s) 213
Ppu21I YACGTR 1 cut(s) 233
PpuMI RGGWCCY 1 cut(s) 442
PshBI ATTAAT 1 cut(s) 335
Psp124BI GAGCTC 1 cut(s) 606
Psp5II RGGWCCY 1 cut(s) 442
PspN4I GGNNCC 3 cut(s) 48, 472, 522
PspPI GGNCC 1 cut(s) 442
PspPPI RGGWCCY 1 cut(s) 442
PstNI CAGNNNCTG 1 cut(s) 280
PsuI RGATCY 2 cut(s) 456, 470
RruI TCGCGA 1 cut(s) 585
RseI CAYNNNNRTG 1 cut(s) 434
SacI GAGCTC 1 cut(s) 606
SaqAI TTAA 4 cut(s) 30, 335, 510, 536
SatI GCNGC 1 cut(s) 212
Sau3AI GATC 3 cut(s) 150, 456, 470
Sau96I GGNCC 1 cut(s) 442
SduI GDGCHC 1 cut(s) 606
SinI GGWCC 1 cut(s) 442
SmiMI CAYNNNNRTG 1 cut(s) 434
SmlI CTYRAG 1 cut(s) 515
SmoI CTYRAG 1 cut(s) 515
Sse9I AATT 3 cut(s) 332, 391, 619
SstI GAGCTC 1 cut(s) 606
StyI CCWWGG 1 cut(s) 526
TaaI ACNGT 1 cut(s) 466
TaiI ACGT 1 cut(s) 235
TaqII GACCGA 1 cut(s) 401
TasI AATT 3 cut(s) 332, 391, 619
TfiI GAWTC 3 cut(s) 53, 268, 426
Tru1I TTAA 4 cut(s) 30, 335, 510, 536
Tru9I TTAA 4 cut(s) 30, 335, 510, 536
TseI GCWGC 1 cut(s) 211
TspDTI ATGAA 3 cut(s) 147, 179, 208
VpaK11BI GGWCC 1 cut(s) 442
VspI ATTAAT 1 cut(s) 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.