Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001527

Physical Location & Seq

Genomic Coordinates Forward (+)

69017536 .. 69020206

Gene Structure 2671 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG490700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGGTGAACCAGTCAAGGTTGTGGTTCCCGAGTCTGTCCTAAAGAAGAGGAAGAGAGAGGAGGAATGGGCTTTGGCAAAGAAGCAGGGGCTAGAAGCCGCCAAGAAGAAGAATGCTGAGAATAGGAAGCTTATTTACAACAAATCCAAACAGTACACCAAGGAGTACGCAGAGAAGGACAATGAATTGGTCCGGTTGAAGCGTGAAGCAAGGCTGAAAGGAGGATTCTATGTTGAGCCAGAGTCTAAGCTCTTGTTTATCATTCGTATCCGTGGTATCAATGCCATTGATCCAAAGACAAAGAAGATCTTGCAGCTTTTGCGTTTGAGACAGATATTCAATGGTGTCTTCCTGAAAGTAAACAAGGCCACCTTGAACATGCTTCACAGGGTTGAGCCATATGTCACTTATGGATACCCCAACCTGAAGAGTGTGAAGGAATTGATTTACAAGAGGGGTTATGGCAAGTTGAACAAGCAGAGAATCGCCTTGACTGATAACTCTGTTGTTGAACAGGGTTTGGGCAAGCATGGCATTATCTGCACGGAAGATCTTATCCACGAGATCTTGACAGTTGGACCTCATTTCAAGGAGGCCAACAACTTCCTATGGCCATTCAAGCTCAAGGCACCATTGGGTGGTCTTAAGAAGAAGAGGAACCATTATGTTGAAGGTGGAGATGCTGGAAACCGTGAGAACTACATTAATGAGCTTATTAGGAGAATGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L30 Ribosomal_L30_N

Protein Analysis

243

Amino Acids

28.18

Weight (kDa)

9.98

Isoelectric Point (pI)

38.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L30_N	PF08079	9 - 80	4.4e-22	Ribosomal L30 N-terminal domain
Ribosomal_L30	PF00327	85 - 135	1.5e-17	Ribosomal protein L30p/L7e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001527)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01250 AT2G01250 AT2G44120 AT2G44120 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580
fragaria_vesca	FvH4_6g37170 FvH4_6g37320 FvH4_6g37320
malus_domestica	MD09G1160400.v1.1 MD16G1246400.v1.1 MD17G1146200.v1.1
prunus_persica	Prupe.1G073100_v2.0.a1 Prupe.3G019000_v2.0.a1
pyrus_communis	pycom09g07900 pycom16g20690
rosa_chinensis	RchiOBHm_Chr2g0149791 RchiOBHm_Chr2g0150141
rosa_laevigata	RLG00000020445 RLG00000020470 RLG00000034320
rosa_multiflora	Rmu_sc0002002.1_g000018 Rmu_sc0009445.1_g000002 Rmu_sc0018143.1_g000004 Rmu_sc0019102.1_g000006 Rmu_ssc0000020.1_g000014
rosa_roxburghii	Rroxscaffold_2G00097410 Rroxscaffold_2G00097690
rosa_rugosa	Rorug02G0416300 Rorug02G0416400 Rorug02G0416400 Rorug02G0416500 Rorug02G0419400 Rorug04G0013800
rosa_samantha	Rh2AG478100 Rh2BG487200 Rh2BG490700 Rh2CG461300 Rh2CG464300 Rh2DG496300 Rh2DG499500 Rh4BG089300
rosa_wichuraiana	Rw2G038780 Rw2G039030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	628
AccB7I	CCANNNNNTGG	1 cut(s)	638
AciI	CCGC	1 cut(s)	99
AclWI	GGATC	1 cut(s)	284
AcoI	YGGCCR	1 cut(s)	611
AcuI	CTGAAG	1 cut(s)	446
AfaI	GTAC	2 cut(s)	155, 167
AfiI	CCNNNNNNNGG	1 cut(s)	638
AflII	CTTAAG	1 cut(s)	644
AgsI	TTSAA	8 cut(s)	199, 340, 376, 472, 512, 589, 619, 671
AluBI	AGCT	5 cut(s)	130, 250, 316, 622, 712
AluI	AGCT	5 cut(s)	130, 250, 316, 622, 712
Alw26I	GTCTC	1 cut(s)	322
AlwI	GGATC	1 cut(s)	284
Ama87I	CYCGRG	1 cut(s)	29
AoxI	GGCC	3 cut(s)	366, 594, 611
ApeKI	GCWGC	1 cut(s)	313
AseI	ATTAAT	1 cut(s)	705
AspS9I	GGNCC	2 cut(s)	190, 578
AsuHPI	GGTGA	1 cut(s)	17
AvaI	CYCGRG	1 cut(s)	29
AvaII	GGWCC	2 cut(s)	190, 578
BalI	TGGCCA	1 cut(s)	613
BanI	GGYRCC	1 cut(s)	628
BarI	GAAGNNNNNNTAC	2 cut(s)	119, 151
BauI	CACGAG	1 cut(s)	560
BbsI	GAAGAC	1 cut(s)	340
BbvI	GCAGC	1 cut(s)	325
BciVI	GTATCC	2 cut(s)	278, 407
BcoDI	GTCTC	1 cut(s)	322
BfaI	CTAG	2 cut(s)	92, 730
BfrI	CTTAAG	1 cut(s)	644
BfuI	GTATCC	2 cut(s)	278, 407
BglII	AGATCT	3 cut(s)	306, 550, 564
BisI	GCNGC	2 cut(s)	99, 314
BlsI	GCNGC	2 cut(s)	100, 315
Bme18I	GGWCC	2 cut(s)	190, 578
BmeT110I	CYCGRG	1 cut(s)	29
BmgT120I	GGNCC	2 cut(s)	190, 578
BmiI	GGNNCC	3 cut(s)	27, 630, 659
BmsI	GCATC	1 cut(s)	670
BpiI	GAAGAC	1 cut(s)	340
BpuEI	CTTGAG	1 cut(s)	608
BsaJI	CCNNGG	2 cut(s)	159, 271
BsaWI	WCCGGW	1 cut(s)	192
Bsc4I	CCNNNNNNNGG	1 cut(s)	638
Bse1I	ACTGG	1 cut(s)	11
BseDI	CCNNGG	2 cut(s)	159, 271
BseLI	CCNNNNNNNGG	1 cut(s)	638
BseMII	CTCAG	1 cut(s)	108
BseNI	ACTGG	1 cut(s)	11
BseRI	GAGGAG	1 cut(s)	74
BseXI	GCAGC	1 cut(s)	325
BsgI	GTGCAG	1 cut(s)	526
BshFI	GGCC	3 cut(s)	368, 596, 613
BshNI	GGYRCC	1 cut(s)	628
BsiHKCI	CYCGRG	1 cut(s)	29
BsiSI	CCGG	1 cut(s)	193
BslI	CCNNNNNNNGG	1 cut(s)	638
BsmAI	GTCTC	1 cut(s)	322
BsmI	GAATGC	1 cut(s)	118
BsnI	GGCC	3 cut(s)	368, 596, 613
BsoBI	CYCGRG	1 cut(s)	29
Bsp143I	GATC	4 cut(s)	289, 306, 550, 564
BspACI	CCGC	1 cut(s)	99
BspANI	GGCC	3 cut(s)	368, 596, 613
BspCNI	CTCAG	1 cut(s)	109
BspLI	GGNNCC	3 cut(s)	27, 630, 659
BspPI	GGATC	1 cut(s)	284
BspT107I	GGYRCC	1 cut(s)	628
BspTI	CTTAAG	1 cut(s)	644
BsrI	ACTGG	1 cut(s)	11
BssECI	CCNNGG	2 cut(s)	159, 271
BssMI	GATC	4 cut(s)	289, 306, 550, 564
BssSI	CACGAG	1 cut(s)	560
BssT1I	CCWWGG	1 cut(s)	159
Bst2BI	CACGAG	1 cut(s)	560
Bst4CI	ACNGT	3 cut(s)	153, 574, 692
Bst6I	CTCTTC	4 cut(s)	41, 47, 422, 647
BstAFI	CTTAAG	1 cut(s)	644
BstAPI	GCANNNNNTGC	2 cut(s)	319, 540
BstC8I	GCNNGC	1 cut(s)	527
BstDEI	CTNAG	2 cut(s)	117, 246
BstDSI	CCRYGG	1 cut(s)	271
BstKTI	GATC	4 cut(s)	292, 309, 553, 567
BstMAI	GTCTC	1 cut(s)	322
BstMBI	GATC	4 cut(s)	289, 306, 550, 564
BstMWI	GCNNNNNNNGC	4 cut(s)	319, 531, 540, 619
BstNSI	RCATGY	1 cut(s)	382
BstV1I	GCAGC	1 cut(s)	325
BstV2I	GAAGAC	1 cut(s)	340
BstX2I	RGATCY	3 cut(s)	306, 550, 564
BstYI	RGATCY	3 cut(s)	306, 550, 564
BsuI	GTATCC	2 cut(s)	278, 407
BsuRI	GGCC	3 cut(s)	368, 596, 613
BtgI	CCRYGG	1 cut(s)	271
Cac8I	GCNNGC	1 cut(s)	527
Cfr13I	GGNCC	2 cut(s)	190, 578
Csp6I	GTAC	2 cut(s)	154, 166
CviAII	CATG	2 cut(s)	379, 530
CviQI	GTAC	2 cut(s)	154, 166
DdeI	CTNAG	2 cut(s)	117, 246
DpnI	GATC	4 cut(s)	291, 308, 552, 566
DpnII	GATC	4 cut(s)	289, 306, 550, 564
EaeI	YGGCCR	1 cut(s)	611
Eam1104I	CTCTTC	4 cut(s)	41, 47, 422, 647
EarI	CTCTTC	4 cut(s)	41, 47, 422, 647
Eco130I	CCWWGG	1 cut(s)	159
Eco47I	GGWCC	2 cut(s)	190, 578
Eco57I	CTGAAG	1 cut(s)	446
Eco88I	CYCGRG	1 cut(s)	29
EcoT14I	CCWWGG	1 cut(s)	159
ErhI	CCWWGG	1 cut(s)	159
FaeI	CATG	2 cut(s)	382, 533
FaiI	YATR	9 cut(s)	231, 380, 400, 402, 411, 462, 531, 610, 666
FalI	AAGNNNNNCTT	4 cut(s)	293, 325, 356, 388
FatI	CATG	2 cut(s)	378, 529
FauNDI	CATATG	1 cut(s)	400
Fnu4HI	GCNGC	2 cut(s)	99, 314
Fsp4HI	GCNGC	2 cut(s)	99, 314
FspBI	CTAG	2 cut(s)	92, 730
GluI	GCNGC	2 cut(s)	99, 314
HaeIII	GGCC	3 cut(s)	368, 596, 613
HapII	CCGG	1 cut(s)	193
Hin1II	CATG	2 cut(s)	382, 533
HindIII	AAGCTT	1 cut(s)	128
HinfI	GANTC	4 cut(s)	32, 225, 242, 483
HpaII	CCGG	1 cut(s)	193
HphI	GGTGA	1 cut(s)	17
Hpy166II	GTNNAC	3 cut(s)	8, 156, 361
Hpy188III	TCNNGA	3 cut(s)	29, 352, 568
Hpy8I	GTNNAC	3 cut(s)	8, 156, 361
HpyAV	CCTTC	3 cut(s)	169, 430, 665
HpyCH4III	ACNGT	3 cut(s)	153, 574, 692
HpyCH4V	TGCA	2 cut(s)	313, 543
HpyF10VI	GCNNNNNNNGC	4 cut(s)	319, 531, 540, 619
HpyF3I	CTNAG	2 cut(s)	117, 246
Hsp92II	CATG	2 cut(s)	382, 533
Kzo9I	GATC	4 cut(s)	289, 306, 550, 564
LpnPI	CCDG	9 cut(s)	24, 71, 206, 252, 365, 373, 437, 500, 669
Lsp1109I	GCAGC	1 cut(s)	325
LweI	GCATC	1 cut(s)	670
MaeI	CTAG	2 cut(s)	92, 730
MaeIII	GTNAC	1 cut(s)	403
MalI	GATC	4 cut(s)	291, 308, 552, 566
MboI	GATC	4 cut(s)	289, 306, 550, 564
MflI	RGATCY	3 cut(s)	306, 550, 564
MlsI	TGGCCA	1 cut(s)	613
MluCI	AATT	2 cut(s)	185, 440
MluNI	TGGCCA	1 cut(s)	613
MlyI	GAGTC	2 cut(s)	41, 251
MmeI	TCCRAC	1 cut(s)	556
MnlI	CCTC	8 cut(s)	42, 52, 55, 215, 447, 586, 591, 648
Mox20I	TGGCCA	1 cut(s)	613
MscI	TGGCCA	1 cut(s)	613
MseI	TTAA	2 cut(s)	645, 705
Msp20I	TGGCCA	1 cut(s)	613
MspCI	CTTAAG	1 cut(s)	644
MspI	CCGG	1 cut(s)	193
Mva1269I	GAATGC	1 cut(s)	118
MwoI	GCNNNNNNNGC	4 cut(s)	319, 531, 540, 619
NdeI	CATATG	1 cut(s)	400
NdeII	GATC	4 cut(s)	289, 306, 550, 564
NlaIII	CATG	2 cut(s)	382, 533
NlaIV	GGNNCC	3 cut(s)	27, 630, 659
NmuCI	GTSAC	1 cut(s)	403
NspI	RCATGY	1 cut(s)	382
PctI	GAATGC	1 cut(s)	118
PfeI	GAWTC	2 cut(s)	225, 483
PflMI	CCANNNNNTGG	1 cut(s)	638
PkrI	GCNGC	2 cut(s)	100, 315
PleI	GAGTC	2 cut(s)	40, 250
PpsI	GAGTC	2 cut(s)	40, 250
PshBI	ATTAAT	1 cut(s)	705
PspN4I	GGNNCC	3 cut(s)	27, 630, 659
PspPI	GGNCC	2 cut(s)	190, 578
PsuI	RGATCY	3 cut(s)	306, 550, 564
RsaI	GTAC	2 cut(s)	155, 167
RsaNI	GTAC	2 cut(s)	154, 166
SaqAI	TTAA	2 cut(s)	645, 705
SatI	GCNGC	2 cut(s)	99, 314
Sau3AI	GATC	4 cut(s)	289, 306, 550, 564
Sau96I	GGNCC	2 cut(s)	190, 578
SchI	GAGTC	2 cut(s)	41, 251
SfaNI	GCATC	1 cut(s)	670
SinI	GGWCC	2 cut(s)	190, 578
SmlI	CTYRAG	2 cut(s)	623, 644
SmoI	CTYRAG	2 cut(s)	623, 644
Sse9I	AATT	2 cut(s)	185, 440
SsiI	CCGC	1 cut(s)	99
SspMI	CTAG	2 cut(s)	92, 730
StyI	CCWWGG	1 cut(s)	159
TaaI	ACNGT	3 cut(s)	153, 574, 692
TasI	AATT	2 cut(s)	185, 440
TatI	WGTACW	1 cut(s)	153
TauI	GCSGC	1 cut(s)	101
TfiI	GAWTC	2 cut(s)	225, 483
Tru1I	TTAA	2 cut(s)	645, 705
Tru9I	TTAA	2 cut(s)	645, 705
TseFI	GTSAC	1 cut(s)	403
TseI	GCWGC	1 cut(s)	313
Tsp45I	GTSAC	1 cut(s)	403
TspDTI	ATGAA	1 cut(s)	198
TspGWI	ACGGA	2 cut(s)	260, 560
Van91I	CCANNNNNTGG	1 cut(s)	638
Vha464I	CTTAAG	1 cut(s)	644
VpaK11BI	GGWCC	2 cut(s)	190, 578
VspI	ATTAAT	1 cut(s)	705
XceI	RCATGY	1 cut(s)	382
XspI	CTAG	2 cut(s)	92, 730

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.