Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001527

Physical Location & Seq

Genomic Coordinates Forward (+)

29406985 .. 29409849

Gene Structure 2865 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g37320.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGGTGAGGCAGTCAAGGTTGTGGTTCCGGAGTCTGTCCTCAAGAAGAGGAAGAGAGAGGACGAATGGGCCTTGGCCAAGAAGCAGGCCCTTGAAGCCGCCAAAAAGAAGAATGCTGCCAACAGGAAGCTTATCTACAATAAAGCCAAGCAGTACACTAAGGAATACGCTGACAAGGACAATGAGTTGGTCTGTTTGAAGCGTGAGGCTAGGTTGAAAGGAGGATTCTATGTTGAGCCAGAATCTAAGCTCTTATTCATCATTCGTATCCGTGGTATCAATGCCATCGACCCAAAGACAAAGAAGATTTTGCAACTCTTGCGTCTGAGACAGGTCTTCAATGGTGTCTTCCTGAAAGTGAACAAGGCCACCTTGAATATGCTTCACAGGGTTGAGCCCTATGTTACTTATGGATACCCCAACTTGAAGAGCGTGAAGGAGTTGATATACAAGAGGGGCTATGGCAAGTTAAACAAGCAGAGAATTGCTTTGACTGATAACTCTGTTGTTGAACAGGGTTTGGGCAAGCATGGCATTATCTGCACTGAAGATCTTATCCATGAGATCTTGACTGTTGGACCTCATTTCAAGGAGGCCAACAACTTCCTATGGCCATTTAAGCTCAAGGCACCATTGGGCGGTCTTAAGAAGAAGAGAAACCACTATGTTGAAGGTGGAGATGCTGGAAACCGTGAAAACTACATCAATGAGCTTATTAGGAGAATGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L30 Ribosomal_L30_N

Protein Analysis

244

Amino Acids

28.0

Weight (kDa)

9.94

Isoelectric Point (pI)

34.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L30_N	PF08079	9 - 80	1.5e-22	Ribosomal L30 N-terminal domain
Ribosomal_L30	PF00327	85 - 135	5e-17	Ribosomal protein L30p/L7e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001527)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01250 AT2G01250 AT2G44120 AT2G44120 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580
fragaria_vesca	FvH4_6g37170 FvH4_6g37320 FvH4_6g37320
malus_domestica	MD09G1160400.v1.1 MD16G1246400.v1.1 MD17G1146200.v1.1
prunus_persica	Prupe.1G073100_v2.0.a1 Prupe.3G019000_v2.0.a1
pyrus_communis	pycom09g07900 pycom16g20690
rosa_chinensis	RchiOBHm_Chr2g0149791 RchiOBHm_Chr2g0150141
rosa_laevigata	RLG00000020445 RLG00000020470 RLG00000034320
rosa_multiflora	Rmu_sc0002002.1_g000018 Rmu_sc0009445.1_g000002 Rmu_sc0018143.1_g000004 Rmu_sc0019102.1_g000006 Rmu_ssc0000020.1_g000014
rosa_roxburghii	Rroxscaffold_2G00097410 Rroxscaffold_2G00097690
rosa_rugosa	Rorug02G0416300 Rorug02G0416400 Rorug02G0416400 Rorug02G0416500 Rorug02G0419400 Rorug04G0013800
rosa_samantha	Rh2AG478100 Rh2BG487200 Rh2BG490700 Rh2CG461300 Rh2CG464300 Rh2DG496300 Rh2DG499500 Rh4BG089300
rosa_wichuraiana	Rw2G038780 Rw2G039030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	628
AccIII	TCCGGA	1 cut(s)	28
AciI	CCGC	2 cut(s)	99, 639
AcoI	YGGCCR	2 cut(s)	75, 611
AcuI	CTGAAG	1 cut(s)	567
AfaI	GTAC	1 cut(s)	155
AfiI	CCNNNNNNNGG	1 cut(s)	638
AflII	CTTAAG	1 cut(s)	644
AgsI	TTSAA	9 cut(s)	95, 199, 217, 340, 376, 427, 512, 589, 671
AluBI	AGCT	4 cut(s)	130, 250, 622, 712
AluI	AGCT	4 cut(s)	130, 250, 622, 712
Alw26I	GTCTC	1 cut(s)	322
Aor13HI	TCCGGA	1 cut(s)	28
AoxI	GGCC	6 cut(s)	69, 75, 87, 366, 594, 611
ApeKI	GCWGC	1 cut(s)	116
AspS9I	GGNCC	3 cut(s)	69, 88, 578
AsuHPI	GGTGA	1 cut(s)	17
AvaII	GGWCC	1 cut(s)	578
BalI	TGGCCA	2 cut(s)	77, 613
BanI	GGYRCC	1 cut(s)	628
BanII	GRGCYC	1 cut(s)	399
BarI	GAAGNNNNNNTAC	2 cut(s)	119, 151
BbsI	GAAGAC	2 cut(s)	328, 340
BbvI	GCAGC	1 cut(s)	103
BccI	CCATC	1 cut(s)	293
BciVI	GTATCC	2 cut(s)	278, 407
BcoDI	GTCTC	1 cut(s)	322
BfaI	CTAG	1 cut(s)	210
BfrI	CTTAAG	1 cut(s)	644
BfuI	GTATCC	2 cut(s)	278, 407
BglII	AGATCT	2 cut(s)	550, 564
BisI	GCNGC	2 cut(s)	99, 117
BlsI	GCNGC	2 cut(s)	100, 118
Bme18I	GGWCC	1 cut(s)	578
BmgT120I	GGNCC	3 cut(s)	69, 88, 578
BmiI	GGNNCC	2 cut(s)	27, 630
BmsI	GCATC	1 cut(s)	670
BpiI	GAAGAC	2 cut(s)	328, 340
BpuEI	CTTGAG	2 cut(s)	26, 608
BsaJI	CCNNGG	2 cut(s)	72, 271
BsaWI	WCCGGW	1 cut(s)	28
Bsc4I	CCNNNNNNNGG	1 cut(s)	638
BseAI	TCCGGA	1 cut(s)	28
BseDI	CCNNGG	2 cut(s)	72, 271
BseLI	CCNNNNNNNGG	1 cut(s)	638
BseMII	CTCAG	1 cut(s)	317
BseXI	GCAGC	1 cut(s)	103
BsgI	GTGCAG	1 cut(s)	526
BshFI	GGCC	6 cut(s)	71, 77, 89, 368, 596, 613
BshNI	GGYRCC	1 cut(s)	628
BsiSI	CCGG	1 cut(s)	29
BslI	CCNNNNNNNGG	1 cut(s)	638
BsmAI	GTCTC	1 cut(s)	322
BsmI	GAATGC	1 cut(s)	118
BsnI	GGCC	6 cut(s)	71, 77, 89, 368, 596, 613
Bsp1286I	GDGCHC	1 cut(s)	399
Bsp13I	TCCGGA	1 cut(s)	28
Bsp143I	GATC	2 cut(s)	550, 564
BspACI	CCGC	2 cut(s)	99, 639
BspANI	GGCC	6 cut(s)	71, 77, 89, 368, 596, 613
BspCNI	CTCAG	1 cut(s)	318
BspEI	TCCGGA	1 cut(s)	28
BspLI	GGNNCC	2 cut(s)	27, 630
BspQI	GCTCTTC	1 cut(s)	422
BspT107I	GGYRCC	1 cut(s)	628
BspTI	CTTAAG	1 cut(s)	644
BssECI	CCNNGG	2 cut(s)	72, 271
BssMI	GATC	2 cut(s)	550, 564
BssT1I	CCWWGG	1 cut(s)	72
Bst4CI	ACNGT	2 cut(s)	574, 692
Bst6I	CTCTTC	4 cut(s)	41, 47, 422, 647
BstAFI	CTTAAG	1 cut(s)	644
BstAPI	GCANNNNNTGC	2 cut(s)	319, 540
BstC8I	GCNNGC	2 cut(s)	87, 527
BstDEI	CTNAG	3 cut(s)	159, 246, 326
BstDSI	CCRYGG	1 cut(s)	271
BstKTI	GATC	2 cut(s)	553, 567
BstMAI	GTCTC	1 cut(s)	322
BstMBI	GATC	2 cut(s)	550, 564
BstMWI	GCNNNNNNNGC	5 cut(s)	95, 319, 531, 540, 619
BstV1I	GCAGC	1 cut(s)	103
BstV2I	GAAGAC	2 cut(s)	328, 340
BstX2I	RGATCY	2 cut(s)	550, 564
BstYI	RGATCY	2 cut(s)	550, 564
BsuI	GTATCC	2 cut(s)	278, 407
BsuRI	GGCC	6 cut(s)	71, 77, 89, 368, 596, 613
BtgI	CCRYGG	1 cut(s)	271
BtsIMutI	CAGTG	1 cut(s)	543
Cac8I	GCNNGC	2 cut(s)	87, 527
Cfr13I	GGNCC	3 cut(s)	69, 88, 578
CseI	GACGC	1 cut(s)	311
Csp6I	GTAC	1 cut(s)	154
CviAII	CATG	2 cut(s)	530, 560
CviQI	GTAC	1 cut(s)	154
DdeI	CTNAG	3 cut(s)	159, 246, 326
DpnI	GATC	2 cut(s)	552, 566
DpnII	GATC	2 cut(s)	550, 564
EaeI	YGGCCR	2 cut(s)	75, 611
Eam1104I	CTCTTC	4 cut(s)	41, 47, 422, 647
EarI	CTCTTC	4 cut(s)	41, 47, 422, 647
Eco130I	CCWWGG	1 cut(s)	72
Eco24I	GRGCYC	1 cut(s)	399
Eco47I	GGWCC	1 cut(s)	578
Eco57I	CTGAAG	1 cut(s)	567
EcoO109I	RGGNCCY	1 cut(s)	88
EcoT14I	CCWWGG	1 cut(s)	72
EcoT38I	GRGCYC	1 cut(s)	399
ErhI	CCWWGG	1 cut(s)	72
FaeI	CATG	2 cut(s)	533, 563
FalI	AAGNNNNNCTT	2 cut(s)	356, 388
FatI	CATG	2 cut(s)	529, 559
Fnu4HI	GCNGC	2 cut(s)	99, 117
FriOI	GRGCYC	1 cut(s)	399
Fsp4HI	GCNGC	2 cut(s)	99, 117
FspBI	CTAG	1 cut(s)	210
GluI	GCNGC	2 cut(s)	99, 117
HaeIII	GGCC	6 cut(s)	71, 77, 89, 368, 596, 613
HapII	CCGG	1 cut(s)	29
HgaI	GACGC	1 cut(s)	311
Hin1II	CATG	2 cut(s)	533, 563
HindIII	AAGCTT	1 cut(s)	128
HinfI	GANTC	3 cut(s)	32, 225, 242
HpaII	CCGG	1 cut(s)	29
HphI	GGTGA	1 cut(s)	17
Hpy166II	GTNNAC	2 cut(s)	156, 361
Hpy188I	TCNGA	1 cut(s)	327
Hpy188III	TCNNGA	4 cut(s)	29, 43, 352, 568
Hpy8I	GTNNAC	2 cut(s)	156, 361
HpyAV	CCTTC	2 cut(s)	430, 665
HpyCH4III	ACNGT	2 cut(s)	574, 692
HpyCH4V	TGCA	2 cut(s)	313, 543
HpyF10VI	GCNNNNNNNGC	5 cut(s)	95, 319, 531, 540, 619
HpyF3I	CTNAG	3 cut(s)	159, 246, 326
Hsp92II	CATG	2 cut(s)	533, 563
Kpn2I	TCCGGA	1 cut(s)	28
Kzo9I	GATC	2 cut(s)	550, 564
LguI	GCTCTTC	1 cut(s)	422
LpnPI	CCDG	9 cut(s)	42, 71, 109, 252, 317, 365, 373, 500, 669
Lsp1109I	GCAGC	1 cut(s)	103
LweI	GCATC	1 cut(s)	670
MaeI	CTAG	1 cut(s)	210
MaeIII	GTNAC	1 cut(s)	403
MalI	GATC	2 cut(s)	552, 566
MboI	GATC	2 cut(s)	550, 564
MflI	RGATCY	2 cut(s)	550, 564
MhlI	GDGCHC	1 cut(s)	399
MlsI	TGGCCA	2 cut(s)	77, 613
MluCI	AATT	1 cut(s)	483
MluNI	TGGCCA	2 cut(s)	77, 613
MlyI	GAGTC	1 cut(s)	41
MmeI	TCCRAC	1 cut(s)	556
MnlI	CCTC	8 cut(s)	42, 50, 52, 199, 215, 447, 586, 591
Mox20I	TGGCCA	2 cut(s)	77, 613
MroI	TCCGGA	1 cut(s)	28
MscI	TGGCCA	2 cut(s)	77, 613
MseI	TTAA	3 cut(s)	470, 618, 645
Msp20I	TGGCCA	2 cut(s)	77, 613
MspCI	CTTAAG	1 cut(s)	644
MspI	CCGG	1 cut(s)	29
Mva1269I	GAATGC	1 cut(s)	118
MwoI	GCNNNNNNNGC	5 cut(s)	95, 319, 531, 540, 619
NdeII	GATC	2 cut(s)	550, 564
NlaIII	CATG	2 cut(s)	533, 563
NlaIV	GGNNCC	2 cut(s)	27, 630
PciSI	GCTCTTC	1 cut(s)	422
PctI	GAATGC	1 cut(s)	118
PfeI	GAWTC	2 cut(s)	225, 242
PkrI	GCNGC	2 cut(s)	100, 118
PleI	GAGTC	1 cut(s)	40
PpsI	GAGTC	1 cut(s)	40
PspN4I	GGNNCC	2 cut(s)	27, 630
PspPI	GGNCC	3 cut(s)	69, 88, 578
PsuI	RGATCY	2 cut(s)	550, 564
RsaI	GTAC	1 cut(s)	155
RsaNI	GTAC	1 cut(s)	154
SapI	GCTCTTC	1 cut(s)	422
SaqAI	TTAA	3 cut(s)	470, 618, 645
SatI	GCNGC	2 cut(s)	99, 117
Sau3AI	GATC	2 cut(s)	550, 564
Sau96I	GGNCC	3 cut(s)	69, 88, 578
SchI	GAGTC	1 cut(s)	41
SduI	GDGCHC	1 cut(s)	399
SfaNI	GCATC	1 cut(s)	670
SinI	GGWCC	1 cut(s)	578
SmlI	CTYRAG	3 cut(s)	41, 623, 644
SmoI	CTYRAG	3 cut(s)	41, 623, 644
Sse9I	AATT	1 cut(s)	483
SsiI	CCGC	2 cut(s)	99, 639
SspMI	CTAG	1 cut(s)	210
StyI	CCWWGG	1 cut(s)	72
TaaI	ACNGT	2 cut(s)	574, 692
TaqI	TCGA	1 cut(s)	288
TasI	AATT	1 cut(s)	483
TatI	WGTACW	1 cut(s)	153
TauI	GCSGC	1 cut(s)	101
TfiI	GAWTC	2 cut(s)	225, 242
Tru1I	TTAA	3 cut(s)	470, 618, 645
Tru9I	TTAA	3 cut(s)	470, 618, 645
TscAI	CASTG	1 cut(s)	550
TseI	GCWGC	1 cut(s)	116
TspDTI	ATGAA	1 cut(s)	247
TspGWI	ACGGA	1 cut(s)	260
TspRI	CASTG	1 cut(s)	550
Vha464I	CTTAAG	1 cut(s)	644
VpaK11BI	GGWCC	1 cut(s)	578
XspI	CTAG	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.