Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001527

Physical Location & Seq

Genomic Coordinates Reverse (-)

40588350 .. 40589958

Gene Structure 1609 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034320

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGCCCACAGACGGCCAAAGCAACTCCTTCAAAAGCAAGGAGAATAATGTAGCTTGGGATGTTCCACAGAAGATAGGCAGAGGTTTTTTCCGGTCTTCGGTGGTAGAGGCAGTGGTTCATAGAATCGTAGTGATCACTGGGCAAGCTCCTCCGACCCGATTTACCGGGGTTTGGGCGTGCAAGCATGGCATTATCTGCATGGAAGATCTTATCCACGAGATCTTGACAGTTGGACCTCATTTCAAGGAGGCCAACAACTTCCTATGGCCATTCAAGCTCAAGGCACCATCGAGTGGTCTTAAGAAGAAGAGGAACCATTATGTTGAAGGTGGAGATGATGGAAACCATGAGAACTACATCAATGAGCTTATTAGGAGAATGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L30 Ribosomal_L30_N

Protein Analysis

129

Amino Acids

14.5

Weight (kDa)

9.23

Isoelectric Point (pI)

44.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001527)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01250 AT2G01250 AT2G44120 AT2G44120 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580
fragaria_vesca	FvH4_6g37170 FvH4_6g37320 FvH4_6g37320
malus_domestica	MD09G1160400.v1.1 MD16G1246400.v1.1 MD17G1146200.v1.1
prunus_persica	Prupe.1G073100_v2.0.a1 Prupe.3G019000_v2.0.a1
pyrus_communis	pycom09g07900 pycom16g20690
rosa_chinensis	RchiOBHm_Chr2g0149791 RchiOBHm_Chr2g0150141
rosa_laevigata	RLG00000020445 RLG00000020470 RLG00000034320
rosa_multiflora	Rmu_sc0002002.1_g000018 Rmu_sc0009445.1_g000002 Rmu_sc0018143.1_g000004 Rmu_sc0019102.1_g000006 Rmu_ssc0000020.1_g000014
rosa_roxburghii	Rroxscaffold_2G00097410 Rroxscaffold_2G00097690
rosa_rugosa	Rorug02G0416300 Rorug02G0416400 Rorug02G0416400 Rorug02G0416500 Rorug02G0419400 Rorug04G0013800
rosa_samantha	Rh2AG478100 Rh2BG487200 Rh2BG490700 Rh2CG461300 Rh2CG464300 Rh2DG496300 Rh2DG499500 Rh4BG089300
rosa_wichuraiana	Rw2G038780 Rw2G039030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	283
AccB7I	CCANNNNNTGG	1 cut(s)	293
AcoI	YGGCCR	2 cut(s)	13, 266
AfiI	CCNNNNNNNGG	4 cut(s)	11, 97, 171, 293
AflII	CTTAAG	1 cut(s)	299
AgsI	TTSAA	4 cut(s)	31, 244, 274, 326
AluBI	AGCT	4 cut(s)	53, 146, 277, 367
AluI	AGCT	4 cut(s)	53, 146, 277, 367
AoxI	GGCC	3 cut(s)	13, 249, 266
AspS9I	GGNCC	1 cut(s)	233
AsuC2I	CCSGG	1 cut(s)	166
AvaII	GGWCC	1 cut(s)	233
BalI	TGGCCA	1 cut(s)	268
BanI	GGYRCC	1 cut(s)	283
BauI	CACGAG	1 cut(s)	215
BbsI	GAAGAC	1 cut(s)	87
BccI	CCATC	2 cut(s)	295, 332
BceAI	ACGGC	1 cut(s)	28
BclI	TGATCA	1 cut(s)	132
BcnI	CCSGG	1 cut(s)	166
BfaI	CTAG	1 cut(s)	385
BfrI	CTTAAG	1 cut(s)	299
BglII	AGATCT	2 cut(s)	205, 219
Bme1390I	CCNGG	1 cut(s)	166
Bme18I	GGWCC	1 cut(s)	233
BmgT120I	GGNCC	1 cut(s)	233
BmiI	GGNNCC	2 cut(s)	285, 314
BmrFI	CCNGG	1 cut(s)	166
BmrI	ACTGGG	1 cut(s)	147
BmuI	ACTGGG	1 cut(s)	147
BpiI	GAAGAC	1 cut(s)	87
BpuEI	CTTGAG	1 cut(s)	263
BpuMI	CCSGG	1 cut(s)	166
BsaJI	CCNNGG	1 cut(s)	165
BsaWI	WCCGGW	1 cut(s)	90
Bsc4I	CCNNNNNNNGG	4 cut(s)	11, 97, 171, 293
Bse1I	ACTGG	1 cut(s)	142
BseDI	CCNNGG	1 cut(s)	165
BseGI	GGATG	1 cut(s)	64
BseLI	CCNNNNNNNGG	4 cut(s)	11, 97, 171, 293
BseNI	ACTGG	1 cut(s)	142
BseRI	GAGGAG	1 cut(s)	138
BshFI	GGCC	3 cut(s)	15, 251, 268
BshNI	GGYRCC	1 cut(s)	283
BsiSI	CCGG	2 cut(s)	91, 165
BslI	CCNNNNNNNGG	4 cut(s)	11, 97, 171, 293
BsnI	GGCC	3 cut(s)	15, 251, 268
Bsp143I	GATC	3 cut(s)	132, 205, 219
BspANI	GGCC	3 cut(s)	15, 251, 268
BspLI	GGNNCC	2 cut(s)	285, 314
BspT107I	GGYRCC	1 cut(s)	283
BspTI	CTTAAG	1 cut(s)	299
BsrI	ACTGG	1 cut(s)	142
BssECI	CCNNGG	1 cut(s)	165
BssMI	GATC	3 cut(s)	132, 205, 219
BssSI	CACGAG	1 cut(s)	215
Bst2BI	CACGAG	1 cut(s)	215
Bst4CI	ACNGT	1 cut(s)	229
Bst6I	CTCTTC	1 cut(s)	302
BstAFI	CTTAAG	1 cut(s)	299
BstAPI	GCANNNNNTGC	1 cut(s)	195
BstC8I	GCNNGC	3 cut(s)	144, 178, 182
BstF5I	GGATG	1 cut(s)	64
BstKTI	GATC	3 cut(s)	135, 208, 222
BstMBI	GATC	3 cut(s)	132, 205, 219
BstMWI	GCNNNNNNNGC	3 cut(s)	186, 195, 274
BstSCI	CCNGG	1 cut(s)	164
BstV2I	GAAGAC	1 cut(s)	87
BstX2I	RGATCY	2 cut(s)	205, 219
BstYI	RGATCY	2 cut(s)	205, 219
BsuRI	GGCC	3 cut(s)	15, 251, 268
BtsCI	GGATG	1 cut(s)	64
BtsI	GCAGTG	1 cut(s)	117
BtsIMutI	CAGTG	2 cut(s)	117, 135
Cac8I	GCNNGC	3 cut(s)	144, 178, 182
Cfr13I	GGNCC	1 cut(s)	233
CviAII	CATG	3 cut(s)	185, 199, 347
CviJI	RGCY	7 cut(s)	15, 53, 146, 251, 268, 277, 367
CviKI_1	RGCY	7 cut(s)	15, 53, 146, 251, 268, 277, 367
DpnI	GATC	3 cut(s)	134, 207, 221
DpnII	GATC	3 cut(s)	132, 205, 219
EaeI	YGGCCR	2 cut(s)	13, 266
Eam1104I	CTCTTC	1 cut(s)	302
EarI	CTCTTC	1 cut(s)	302
Eco47I	GGWCC	1 cut(s)	233
FaeI	CATG	3 cut(s)	188, 202, 350
FaiI	YATR	6 cut(s)	120, 186, 200, 265, 321, 348
FatI	CATG	3 cut(s)	184, 198, 346
FbaI	TGATCA	1 cut(s)	132
FokI	GGATG	1 cut(s)	71
FspBI	CTAG	1 cut(s)	385
HaeIII	GGCC	3 cut(s)	15, 251, 268
HapII	CCGG	2 cut(s)	91, 165
Hin1II	CATG	3 cut(s)	188, 202, 350
HinfI	GANTC	1 cut(s)	123
HpaII	CCGG	2 cut(s)	91, 165
Hpy188I	TCNGA	1 cut(s)	153
Hpy188III	TCNNGA	1 cut(s)	223
HpyAV	CCTTC	2 cut(s)	37, 320
HpyCH4III	ACNGT	1 cut(s)	229
HpyCH4V	TGCA	2 cut(s)	180, 198
HpyF10VI	GCNNNNNNNGC	3 cut(s)	186, 195, 274
Hsp92II	CATG	3 cut(s)	188, 202, 350
Ksp22I	TGATCA	1 cut(s)	132
Kzo9I	GATC	3 cut(s)	132, 205, 219
LmnI	GCTCC	1 cut(s)	151
LpnPI	CCDG	3 cut(s)	104, 123, 178
MaeI	CTAG	1 cut(s)	385
MalI	GATC	3 cut(s)	134, 207, 221
MboI	GATC	3 cut(s)	132, 205, 219
MboII	GAAGA	5 cut(s)	82, 87, 215, 316, 319
MflI	RGATCY	2 cut(s)	205, 219
MlsI	TGGCCA	1 cut(s)	268
MluNI	TGGCCA	1 cut(s)	268
MmeI	TCCRAC	2 cut(s)	176, 211
MnlI	CCTC	6 cut(s)	74, 100, 159, 241, 246, 303
Mox20I	TGGCCA	1 cut(s)	268
MscI	TGGCCA	1 cut(s)	268
MseI	TTAA	1 cut(s)	300
Msp20I	TGGCCA	1 cut(s)	268
MspCI	CTTAAG	1 cut(s)	299
MspI	CCGG	2 cut(s)	91, 165
MspR9I	CCNGG	1 cut(s)	166
MwoI	GCNNNNNNNGC	3 cut(s)	186, 195, 274
NciI	CCSGG	1 cut(s)	166
NdeII	GATC	3 cut(s)	132, 205, 219
NlaIII	CATG	3 cut(s)	188, 202, 350
NlaIV	GGNNCC	2 cut(s)	285, 314
PfeI	GAWTC	1 cut(s)	123
PflMI	CCANNNNNTGG	1 cut(s)	293
PspN4I	GGNNCC	2 cut(s)	285, 314
PspPI	GGNCC	1 cut(s)	233
PsuI	RGATCY	2 cut(s)	205, 219
SaqAI	TTAA	1 cut(s)	300
Sau3AI	GATC	3 cut(s)	132, 205, 219
Sau96I	GGNCC	1 cut(s)	233
ScrFI	CCNGG	1 cut(s)	166
SetI	ASST	7 cut(s)	55, 85, 148, 238, 279, 331, 369
SinI	GGWCC	1 cut(s)	233
SmlI	CTYRAG	2 cut(s)	278, 299
SmoI	CTYRAG	2 cut(s)	278, 299
SspMI	CTAG	1 cut(s)	385
StyD4I	CCNGG	1 cut(s)	164
TaaI	ACNGT	1 cut(s)	229
TaqI	TCGA	1 cut(s)	290
TfiI	GAWTC	1 cut(s)	123
Tru1I	TTAA	1 cut(s)	300
Tru9I	TTAA	1 cut(s)	300
TscAI	CASTG	2 cut(s)	117, 142
TspDTI	ATGAA	1 cut(s)	107
TspRI	CASTG	2 cut(s)	117, 142
Van91I	CCANNNNNTGG	1 cut(s)	293
Vha464I	CTTAAG	1 cut(s)	299
VpaK11BI	GGWCC	1 cut(s)	233
XspI	CTAG	1 cut(s)	385

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.