Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001527

Physical Location & Seq

Genomic Coordinates Forward (+)

4433047 .. 4435305

Gene Structure 2259 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G13580.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGACTGAAGCAGAGTCCAAGACTGTTGTTCCTGAGTCAGTGTTGAAGAAGAGAAAGAGGGAGGAAGAATGGGCACTTGCCAAGAAACAGGAGCTTGAGGCTGCCAAAAAGCAGAATGCTGAGAAGAGGAAACTCATATTTAACCGGGCTAAACAGTACTCCAAGGAGTACCAGGAGAAAGAAAGGGAATTAATCCAGCTGAAGCGTGAGGCAAAATTGAAAGGAGGCTTTTATGTTGACCCAGAAGCTAAACTGCTTTTCATTATCCGTATCCGTGGTATCAATGCCATTGACCCAAAGACAAAGAAGATTTTGCAACTTTTGCGTTTAAGACAGATTTTCAATGGTGTGTTCTTGAAGGTCAACAAGGCAACCATTAACATGCTTCGCCGTGTTGAACCCTATGTAACCTATGGATACCCGAACTTAAAAAGTGTGAAGGAATTGATTTACAAACGAGGTTTTGGAAAGCTTAACCACCAGAGGACTGCCTTAACAGACAATTCTATTGTAGATCAGGGGCTAGGAAAGCATGGCATCATCTGCGTTGAGGATCTGATCCATGAGATCATGACGGTTGGGCCACATTTCAAGGAAGCCAATAACTTTTTGTGGCCATTCCAGTTGAAGGCTCCATTGGGAGGGATGAAGAAGAAGAGGAACCATTACGTGGAAGGAGGAGATGCTGGAAACCGCGAGAACTTCATCAACGAGCTCGTTAGGAGAATGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000463 GO:0000470 GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0030312 GO:0031090 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0097159 GO:0098588 GO:0098805 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L30 Ribosomal_L30_N

Protein Analysis

244

Amino Acids

28.43

Weight (kDa)

9.95

Isoelectric Point (pI)

36.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L30_N	PF08079	10 - 81	6.5e-26	Ribosomal L30 N-terminal domain
Ribosomal_L30	PF00327	86 - 136	2.1e-18	Ribosomal protein L30p/L7e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001527)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01250 AT2G01250 AT2G44120 AT2G44120 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580
fragaria_vesca	FvH4_6g37170 FvH4_6g37320 FvH4_6g37320
malus_domestica	MD09G1160400.v1.1 MD16G1246400.v1.1 MD17G1146200.v1.1
prunus_persica	Prupe.1G073100_v2.0.a1 Prupe.3G019000_v2.0.a1
pyrus_communis	pycom09g07900 pycom16g20690
rosa_chinensis	RchiOBHm_Chr2g0149791 RchiOBHm_Chr2g0150141
rosa_laevigata	RLG00000020445 RLG00000020470 RLG00000034320
rosa_multiflora	Rmu_sc0002002.1_g000018 Rmu_sc0009445.1_g000002 Rmu_sc0018143.1_g000004 Rmu_sc0019102.1_g000006 Rmu_ssc0000020.1_g000014
rosa_roxburghii	Rroxscaffold_2G00097410 Rroxscaffold_2G00097690
rosa_rugosa	Rorug02G0416300 Rorug02G0416400 Rorug02G0416400 Rorug02G0416500 Rorug02G0419400 Rorug04G0013800
rosa_samantha	Rh2AG478100 Rh2BG487200 Rh2BG490700 Rh2CG461300 Rh2CG464300 Rh2DG496300 Rh2DG499500 Rh4BG089300
rosa_wichuraiana	Rw2G038780 Rw2G039030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	670
AccII	CGCG	1 cut(s)	696
AciI	CCGC	1 cut(s)	694
AclWI	GGATC	2 cut(s)	553, 561
AcoI	YGGCCR	1 cut(s)	614
AcuI	CTGAAG	2 cut(s)	27, 221
AfaI	GTAC	2 cut(s)	158, 170
AfiI	CCNNNNNNNGG	3 cut(s)	628, 641, 670
AgsI	TTSAA	7 cut(s)	46, 220, 343, 358, 398, 592, 628
AjnI	CCWGG	1 cut(s)	171
AjuI	GAANNNNNNNTTGG	2 cut(s)	620, 652
AluBI	AGCT	5 cut(s)	94, 199, 248, 472, 715
AluI	AGCT	5 cut(s)	94, 199, 248, 472, 715
Alw21I	GWGCWC	1 cut(s)	717
AlwI	GGATC	2 cut(s)	553, 561
AoxI	GGCC	2 cut(s)	581, 614
ApeKI	GCWGC	1 cut(s)	101
AseI	ATTAAT	1 cut(s)	191
AspS9I	GGNCC	1 cut(s)	581
AsuC2I	CCSGG	1 cut(s)	146
BaeGI	GKGCMC	1 cut(s)	76
BalI	TGGCCA	1 cut(s)	616
BanII	GRGCYC	1 cut(s)	717
Bbv12I	GWGCWC	1 cut(s)	717
BbvI	GCAGC	1 cut(s)	88
BceAI	ACGGC	1 cut(s)	375
BciT130I	CCWGG	1 cut(s)	173
BciVI	GTATCC	2 cut(s)	281, 410
BcnI	CCSGG	1 cut(s)	146
BfaI	CTAG	1 cut(s)	524
BfuI	GTATCC	2 cut(s)	281, 410
BisI	GCNGC	1 cut(s)	102
BlsI	GCNGC	1 cut(s)	103
BmcAI	AGTACT	1 cut(s)	158
Bme1390I	CCNGG	2 cut(s)	146, 173
BmgT120I	GGNCC	1 cut(s)	581
BmiI	GGNNCC	2 cut(s)	633, 662
BmrFI	CCNGG	2 cut(s)	146, 173
BmsI	GCATC	2 cut(s)	546, 673
BpuEI	CTTGAG	1 cut(s)	116
BpuMI	CCSGG	1 cut(s)	146
BsaAI	YACGTR	1 cut(s)	670
BsaJI	CCNNGG	2 cut(s)	162, 274
Bsc4I	CCNNNNNNNGG	3 cut(s)	628, 641, 670
Bse1I	ACTGG	1 cut(s)	622
BseBI	CCWGG	1 cut(s)	173
BseDI	CCNNGG	2 cut(s)	162, 274
BseGI	GGATG	1 cut(s)	651
BseLI	CCNNNNNNNGG	3 cut(s)	628, 641, 670
BseMII	CTCAG	2 cut(s)	24, 111
BseNI	ACTGG	1 cut(s)	622
BseRI	GAGGAG	1 cut(s)	693
BseSI	GKGCMC	1 cut(s)	76
BseXI	GCAGC	1 cut(s)	88
Bsh1236I	CGCG	1 cut(s)	696
BshFI	GGCC	2 cut(s)	583, 616
BsiHKAI	GWGCWC	1 cut(s)	717
BsiSI	CCGG	1 cut(s)	145
BslI	CCNNNNNNNGG	3 cut(s)	628, 641, 670
BsmI	GAATGC	1 cut(s)	121
BsnI	GGCC	2 cut(s)	583, 616
Bsp1286I	GDGCHC	2 cut(s)	76, 717
Bsp143I	GATC	4 cut(s)	514, 553, 558, 567
BspACI	CCGC	1 cut(s)	694
BspANI	GGCC	2 cut(s)	583, 616
BspCNI	CTCAG	2 cut(s)	25, 112
BspFNI	CGCG	1 cut(s)	696
BspHI	TCATGA	1 cut(s)	570
BspLI	GGNNCC	2 cut(s)	633, 662
BspPI	GGATC	2 cut(s)	553, 561
BsrI	ACTGG	1 cut(s)	622
BssECI	CCNNGG	2 cut(s)	162, 274
BssMI	GATC	4 cut(s)	514, 553, 558, 567
BssT1I	CCWWGG	1 cut(s)	162
Bst2UI	CCWGG	1 cut(s)	173
Bst4CI	ACNGT	3 cut(s)	25, 156, 577
Bst6I	CTCTTC	3 cut(s)	44, 119, 650
BstAPI	GCANNNNNTGC	2 cut(s)	322, 543
BstBAI	YACGTR	1 cut(s)	670
BstDEI	CTNAG	2 cut(s)	33, 120
BstDSI	CCRYGG	1 cut(s)	274
BstF5I	GGATG	1 cut(s)	651
BstFNI	CGCG	1 cut(s)	696
BstKTI	GATC	4 cut(s)	517, 556, 561, 570
BstMBI	GATC	4 cut(s)	514, 553, 558, 567
BstMWI	GCNNNNNNNGC	3 cut(s)	322, 529, 543
BstNI	CCWGG	1 cut(s)	173
BstNSI	RCATGY	1 cut(s)	385
BstSCI	CCNGG	2 cut(s)	144, 171
BstSLI	GKGCMC	1 cut(s)	76
BstUI	CGCG	1 cut(s)	696
BstV1I	GCAGC	1 cut(s)	88
BstX2I	RGATCY	1 cut(s)	553
BstYI	RGATCY	1 cut(s)	553
BsuI	GTATCC	2 cut(s)	281, 410
BsuRI	GGCC	2 cut(s)	583, 616
BtgI	CCRYGG	1 cut(s)	274
BtsCI	GGATG	1 cut(s)	651
BtsIMutI	CAGTG	1 cut(s)	45
CciI	TCATGA	1 cut(s)	570
Cfr13I	GGNCC	1 cut(s)	581
Csp6I	GTAC	2 cut(s)	157, 169
CviAII	CATG	4 cut(s)	382, 533, 563, 571
CviQI	GTAC	2 cut(s)	157, 169
DdeI	CTNAG	2 cut(s)	33, 120
DpnI	GATC	4 cut(s)	516, 555, 560, 569
DpnII	GATC	4 cut(s)	514, 553, 558, 567
EaeI	YGGCCR	1 cut(s)	614
Eam1104I	CTCTTC	3 cut(s)	44, 119, 650
EarI	CTCTTC	3 cut(s)	44, 119, 650
Ecl136II	GAGCTC	1 cut(s)	715
Eco130I	CCWWGG	1 cut(s)	162
Eco24I	GRGCYC	1 cut(s)	717
Eco53kI	GAGCTC	1 cut(s)	715
Eco57I	CTGAAG	2 cut(s)	27, 221
EcoICRI	GAGCTC	1 cut(s)	715
EcoRII	CCWGG	1 cut(s)	171
EcoT14I	CCWWGG	1 cut(s)	162
EcoT38I	GRGCYC	1 cut(s)	717
ErhI	CCWWGG	1 cut(s)	162
FaeI	CATG	4 cut(s)	385, 536, 566, 574
FaiI	YATR	8 cut(s)	137, 234, 383, 405, 414, 534, 564, 572
FatI	CATG	4 cut(s)	381, 532, 562, 570
Fnu4HI	GCNGC	1 cut(s)	102
FokI	GGATG	1 cut(s)	658
FriOI	GRGCYC	1 cut(s)	717
Fsp4HI	GCNGC	1 cut(s)	102
FspBI	CTAG	1 cut(s)	524
GluI	GCNGC	1 cut(s)	102
HaeIII	GGCC	2 cut(s)	583, 616
HapII	CCGG	1 cut(s)	145
Hin1II	CATG	4 cut(s)	385, 536, 566, 574
HincII	GTYRAC	2 cut(s)	238, 364
HindII	GTYRAC	2 cut(s)	238, 364
HindIII	AAGCTT	1 cut(s)	470
HinfI	GANTC	2 cut(s)	14, 35
HpaII	CCGG	1 cut(s)	145
Hpy166II	GTNNAC	2 cut(s)	238, 364
Hpy188I	TCNGA	1 cut(s)	558
Hpy188III	TCNNGA	3 cut(s)	32, 355, 571
Hpy8I	GTNNAC	2 cut(s)	238, 364
HpyAV	CCTTC	4 cut(s)	352, 433, 622, 668
HpyCH4III	ACNGT	3 cut(s)	25, 156, 577
HpyCH4IV	ACGT	1 cut(s)	669
HpyCH4V	TGCA	1 cut(s)	316
HpyF10VI	GCNNNNNNNGC	3 cut(s)	322, 529, 543
HpyF3I	CTNAG	2 cut(s)	33, 120
HpySE526I	ACGT	1 cut(s)	669
Hsp92II	CATG	4 cut(s)	385, 536, 566, 574
Kzo9I	GATC	4 cut(s)	514, 553, 558, 567
LmnI	GCTCC	2 cut(s)	91, 637
Lsp1109I	GCAGC	1 cut(s)	88
LweI	GCATC	2 cut(s)	546, 673
MaeI	CTAG	1 cut(s)	524
MaeII	ACGT	1 cut(s)	669
MaeIII	GTNAC	1 cut(s)	406
MalI	GATC	4 cut(s)	516, 555, 560, 569
MboI	GATC	4 cut(s)	514, 553, 558, 567
MboII	GAAGA	8 cut(s)	58, 61, 77, 136, 319, 661, 664, 667
MflI	RGATCY	1 cut(s)	553
MhlI	GDGCHC	2 cut(s)	76, 717
MlsI	TGGCCA	1 cut(s)	616
MluCI	AATT	4 cut(s)	188, 215, 443, 502
MluNI	TGGCCA	1 cut(s)	616
MlyI	GAGTC	2 cut(s)	23, 44
Mox20I	TGGCCA	1 cut(s)	616
MscI	TGGCCA	1 cut(s)	616
MseI	TTAA	7 cut(s)	141, 191, 329, 378, 428, 474, 494
MslI	CAYNNNNRTG	1 cut(s)	380
Msp20I	TGGCCA	1 cut(s)	616
MspA1I	CMGCKG	1 cut(s)	199
MspI	CCGG	1 cut(s)	145
MspR9I	CCNGG	2 cut(s)	146, 173
Mva1269I	GAATGC	1 cut(s)	121
MvaI	CCWGG	1 cut(s)	173
MvnI	CGCG	1 cut(s)	696
MwoI	GCNNNNNNNGC	3 cut(s)	322, 529, 543
NciI	CCSGG	1 cut(s)	146
NdeII	GATC	4 cut(s)	514, 553, 558, 567
NlaIII	CATG	4 cut(s)	385, 536, 566, 574
NlaIV	GGNNCC	2 cut(s)	633, 662
NspI	RCATGY	1 cut(s)	385
PagI	TCATGA	1 cut(s)	570
PctI	GAATGC	1 cut(s)	121
PflMI	CCANNNNNTGG	1 cut(s)	670
PkrI	GCNGC	1 cut(s)	103
PleI	GAGTC	2 cut(s)	22, 43
PpsI	GAGTC	2 cut(s)	22, 43
Ppu21I	YACGTR	1 cut(s)	670
PshBI	ATTAAT	1 cut(s)	191
Psp124BI	GAGCTC	1 cut(s)	717
Psp6I	CCWGG	1 cut(s)	171
PspGI	CCWGG	1 cut(s)	171
PspN4I	GGNNCC	2 cut(s)	633, 662
PspPI	GGNCC	1 cut(s)	581
PsuI	RGATCY	1 cut(s)	553
PvuII	CAGCTG	1 cut(s)	199
RsaI	GTAC	2 cut(s)	158, 170
RsaNI	GTAC	2 cut(s)	157, 169
RseI	CAYNNNNRTG	1 cut(s)	380
SacI	GAGCTC	1 cut(s)	717
SaqAI	TTAA	7 cut(s)	141, 191, 329, 378, 428, 474, 494
SatI	GCNGC	1 cut(s)	102
Sau3AI	GATC	4 cut(s)	514, 553, 558, 567
Sau96I	GGNCC	1 cut(s)	581
ScaI	AGTACT	1 cut(s)	158
SchI	GAGTC	2 cut(s)	23, 44
ScrFI	CCNGG	2 cut(s)	146, 173
SduI	GDGCHC	2 cut(s)	76, 717
SetI	ASST	9 cut(s)	96, 201, 250, 363, 413, 463, 474, 672, 717
SfaNI	GCATC	2 cut(s)	546, 673
SmiMI	CAYNNNNRTG	1 cut(s)	380
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
Sse9I	AATT	4 cut(s)	188, 215, 443, 502
SsiI	CCGC	1 cut(s)	694
SspMI	CTAG	1 cut(s)	524
SstI	GAGCTC	1 cut(s)	717
StyD4I	CCNGG	2 cut(s)	144, 171
StyI	CCWWGG	1 cut(s)	162
TaaI	ACNGT	3 cut(s)	25, 156, 577
TaiI	ACGT	1 cut(s)	672
TasI	AATT	4 cut(s)	188, 215, 443, 502
TatI	WGTACW	1 cut(s)	156
Tru1I	TTAA	7 cut(s)	141, 191, 329, 378, 428, 474, 494
Tru9I	TTAA	7 cut(s)	141, 191, 329, 378, 428, 474, 494
TscAI	CASTG	1 cut(s)	45
TseI	GCWGC	1 cut(s)	101
TspDTI	ATGAA	3 cut(s)	250, 662, 694
TspGWI	ACGGA	2 cut(s)	257, 263
TspRI	CASTG	1 cut(s)	45
Van91I	CCANNNNNTGG	1 cut(s)	670
VspI	ATTAAT	1 cut(s)	191
XceI	RCATGY	1 cut(s)	385
XspI	CTAG	1 cut(s)	524
ZrmI	AGTACT	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.