Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000020.1

Orthogroup ID

OG0001527

Physical Location & Seq

Genomic Coordinates Reverse (-)

61556 .. 64277

Gene Structure 2722 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000020.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 763 bp

gtcctccaagccgcggcgacatcagctcgagatgggtgaaccggtcaaggttgtggttccagagtctgtcctaaagaagaggaagagagaggaggaatgggctttggcaaagaagcaggggcttgaagccgccaagaagaagaatgctgagaataggaagcttatttacaacaaatccaaacagtacaccaaggagtacgcagagaaggacaatgaattggtccggttgaagcgtgaagcaaggctgaaaggaggattctatgttgagccagagtctaagctcttgtttatcattcgtatccgtggtatcaatgccattgatccaaagacaaagaagatcttgcagcttttgcgtttgagacagatattcaatggtgtcttcctgaaagtaaacaaggccaccttgaacatgcttcacagggttgagccatatgtcacttatggatatcccaacttgaagagtgtgaaggaattgatttacaagaggggttatggcaagttgaacaagcagagaatcgccttgactgataactctgttgttgaacagggtttgggcaagcatggcattatctgcacggaagatcttatccatgagatcttgacagttggacctcatttcaaggaggccaacaacttcctatggccattcaagctcaaggcaccattgggtggtcttaagaagaagaggaaccattatgttgaaggtggagatgctggaaaccgtgagaactacatcaatgagcttattaggagaatgaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L30 Ribosomal_L30_N

Protein Analysis

253

Amino Acids

29.4

Weight (kDa)

10.03

Isoelectric Point (pI)

40.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001527)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01250 AT2G01250 AT2G44120 AT2G44120 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580
fragaria_vesca	FvH4_6g37170 FvH4_6g37320 FvH4_6g37320
malus_domestica	MD09G1160400.v1.1 MD16G1246400.v1.1 MD17G1146200.v1.1
prunus_persica	Prupe.1G073100_v2.0.a1 Prupe.3G019000_v2.0.a1
pyrus_communis	pycom09g07900 pycom16g20690
rosa_chinensis	RchiOBHm_Chr2g0149791 RchiOBHm_Chr2g0150141
rosa_laevigata	RLG00000020445 RLG00000020470 RLG00000034320
rosa_multiflora	Rmu_sc0002002.1_g000018 Rmu_sc0009445.1_g000002 Rmu_sc0018143.1_g000004 Rmu_sc0019102.1_g000006 Rmu_ssc0000020.1_g000014
rosa_roxburghii	Rroxscaffold_2G00097410 Rroxscaffold_2G00097690
rosa_rugosa	Rorug02G0416300 Rorug02G0416400 Rorug02G0416400 Rorug02G0416500 Rorug02G0419400 Rorug04G0013800
rosa_samantha	Rh2AG478100 Rh2BG487200 Rh2BG490700 Rh2CG461300 Rh2CG464300 Rh2DG496300 Rh2DG499500 Rh4BG089300
rosa_wichuraiana	Rw2G038780 Rw2G039030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	659
AccB7I	CCANNNNNTGG	1 cut(s)	669
AccII	CGCG	1 cut(s)	14
AciI	CCGC	3 cut(s)	12, 14, 130
AclWI	GGATC	1 cut(s)	315
AcoI	YGGCCR	1 cut(s)	642
AfaI	GTAC	2 cut(s)	186, 198
AfiI	CCNNNNNNNGG	2 cut(s)	13, 669
AflII	CTTAAG	1 cut(s)	675
AgeI	ACCGGT	1 cut(s)	41
AluBI	AGCT	6 cut(s)	26, 161, 281, 347, 653, 743
AluI	AGCT	6 cut(s)	26, 161, 281, 347, 653, 743
Alw26I	GTCTC	1 cut(s)	353
AlwI	GGATC	1 cut(s)	315
AlwNI	CAGNNNCTG	1 cut(s)	66
Ama87I	CYCGRG	1 cut(s)	27
AoxI	GGCC	3 cut(s)	397, 625, 642
ApeKI	GCWGC	1 cut(s)	344
AsiGI	ACCGGT	1 cut(s)	41
AspS9I	GGNCC	2 cut(s)	221, 609
AsuHPI	GGTGA	1 cut(s)	48
AvaI	CYCGRG	1 cut(s)	27
AvaII	GGWCC	2 cut(s)	221, 609
BalI	TGGCCA	1 cut(s)	644
BanI	GGYRCC	1 cut(s)	659
BarI	GAAGNNNNNNTAC	2 cut(s)	150, 182
BbsI	GAAGAC	1 cut(s)	371
BbvI	GCAGC	1 cut(s)	356
BccI	CCATC	1 cut(s)	26
BciVI	GTATCC	1 cut(s)	309
BcoDI	GTCTC	1 cut(s)	353
BfaI	CTAG	1 cut(s)	761
BfrI	CTTAAG	1 cut(s)	675
BfuI	GTATCC	1 cut(s)	309
BglII	AGATCT	3 cut(s)	337, 581, 595
BisI	GCNGC	4 cut(s)	12, 15, 130, 345
BlsI	GCNGC	4 cut(s)	13, 16, 131, 346
Bme18I	GGWCC	2 cut(s)	221, 609
BmeT110I	CYCGRG	1 cut(s)	27
BmgT120I	GGNCC	2 cut(s)	221, 609
BmiI	GGNNCC	3 cut(s)	58, 661, 690
BmsI	GCATC	1 cut(s)	701
BpiI	GAAGAC	1 cut(s)	371
BpuEI	CTTGAG	1 cut(s)	639
BsaJI	CCNNGG	3 cut(s)	12, 190, 302
BsaWI	WCCGGW	2 cut(s)	41, 223
Bsc4I	CCNNNNNNNGG	2 cut(s)	13, 669
Bse118I	RCCGGY	1 cut(s)	41
BseDI	CCNNGG	3 cut(s)	12, 190, 302
BseLI	CCNNNNNNNGG	2 cut(s)	13, 669
BseMII	CTCAG	1 cut(s)	139
BseRI	GAGGAG	1 cut(s)	105
BseXI	GCAGC	1 cut(s)	356
BsgI	GTGCAG	1 cut(s)	557
Bsh1236I	CGCG	1 cut(s)	14
BshFI	GGCC	3 cut(s)	399, 627, 644
BshNI	GGYRCC	1 cut(s)	659
BshTI	ACCGGT	1 cut(s)	41
BsiHKCI	CYCGRG	1 cut(s)	27
BsiSI	CCGG	2 cut(s)	42, 224
BslI	CCNNNNNNNGG	2 cut(s)	13, 669
BsmAI	GTCTC	1 cut(s)	353
BsmI	GAATGC	1 cut(s)	149
BsnI	GGCC	3 cut(s)	399, 627, 644
BsoBI	CYCGRG	1 cut(s)	27
Bsp143I	GATC	4 cut(s)	320, 337, 581, 595
BspACI	CCGC	3 cut(s)	12, 14, 130
BspANI	GGCC	3 cut(s)	399, 627, 644
BspCNI	CTCAG	1 cut(s)	140
BspFNI	CGCG	1 cut(s)	14
BspLI	GGNNCC	3 cut(s)	58, 661, 690
BspPI	GGATC	1 cut(s)	315
BspT107I	GGYRCC	1 cut(s)	659
BspTI	CTTAAG	1 cut(s)	675
BsrFI	RCCGGY	1 cut(s)	41
BssAI	RCCGGY	1 cut(s)	41
BssECI	CCNNGG	3 cut(s)	12, 190, 302
BssMI	GATC	4 cut(s)	320, 337, 581, 595
BssT1I	CCWWGG	1 cut(s)	190
Bst4CI	ACNGT	3 cut(s)	184, 605, 723
Bst6I	CTCTTC	4 cut(s)	72, 78, 453, 678
BstAFI	CTTAAG	1 cut(s)	675
BstAPI	GCANNNNNTGC	2 cut(s)	350, 571
BstC8I	GCNNGC	1 cut(s)	558
BstDEI	CTNAG	2 cut(s)	148, 277
BstDSI	CCRYGG	2 cut(s)	12, 302
BstFNI	CGCG	1 cut(s)	14
BstKTI	GATC	4 cut(s)	323, 340, 584, 598
BstMAI	GTCTC	1 cut(s)	353
BstMBI	GATC	4 cut(s)	320, 337, 581, 595
BstMWI	GCNNNNNNNGC	5 cut(s)	23, 350, 562, 571, 650
BstNSI	RCATGY	1 cut(s)	413
BstUI	CGCG	1 cut(s)	14
BstV1I	GCAGC	1 cut(s)	356
BstV2I	GAAGAC	1 cut(s)	371
BstX2I	RGATCY	3 cut(s)	337, 581, 595
BstYI	RGATCY	3 cut(s)	337, 581, 595
BsuI	GTATCC	1 cut(s)	309
BsuRI	GGCC	3 cut(s)	399, 627, 644
BtgI	CCRYGG	2 cut(s)	12, 302
Cac8I	GCNNGC	1 cut(s)	558
CaiI	CAGNNNCTG	1 cut(s)	66
Cfr10I	RCCGGY	1 cut(s)	41
Cfr13I	GGNCC	2 cut(s)	221, 609
Cfr42I	CCGCGG	1 cut(s)	15
Csp6I	GTAC	2 cut(s)	185, 197
CspAI	ACCGGT	1 cut(s)	41
CviAII	CATG	3 cut(s)	410, 561, 591
CviQI	GTAC	2 cut(s)	185, 197
DdeI	CTNAG	2 cut(s)	148, 277
DpnI	GATC	4 cut(s)	322, 339, 583, 597
DpnII	GATC	4 cut(s)	320, 337, 581, 595
EaeI	YGGCCR	1 cut(s)	642
Eam1104I	CTCTTC	4 cut(s)	72, 78, 453, 678
EarI	CTCTTC	4 cut(s)	72, 78, 453, 678
Eco130I	CCWWGG	1 cut(s)	190
Eco32I	GATATC	1 cut(s)	447
Eco47I	GGWCC	2 cut(s)	221, 609
Eco88I	CYCGRG	1 cut(s)	27
EcoRV	GATATC	1 cut(s)	447
EcoT14I	CCWWGG	1 cut(s)	190
ErhI	CCWWGG	1 cut(s)	190
FaeI	CATG	3 cut(s)	413, 564, 594
FalI	AAGNNNNNCTT	4 cut(s)	324, 356, 387, 419
FatI	CATG	3 cut(s)	409, 560, 590
FauNDI	CATATG	1 cut(s)	431
Fnu4HI	GCNGC	4 cut(s)	12, 15, 130, 345
Fsp4HI	GCNGC	4 cut(s)	12, 15, 130, 345
FspBI	CTAG	1 cut(s)	761
GluI	GCNGC	4 cut(s)	12, 15, 130, 345
HaeIII	GGCC	3 cut(s)	399, 627, 644
HapII	CCGG	2 cut(s)	42, 224
Hin1II	CATG	3 cut(s)	413, 564, 594
HindIII	AAGCTT	1 cut(s)	159
HinfI	GANTC	4 cut(s)	63, 256, 273, 514
HpaII	CCGG	2 cut(s)	42, 224
HphI	GGTGA	1 cut(s)	48
Hpy166II	GTNNAC	3 cut(s)	39, 187, 392
Hpy188III	TCNNGA	4 cut(s)	29, 60, 383, 599
Hpy8I	GTNNAC	3 cut(s)	39, 187, 392
HpyAV	CCTTC	3 cut(s)	200, 461, 696
HpyCH4III	ACNGT	3 cut(s)	184, 605, 723
HpyCH4V	TGCA	2 cut(s)	344, 574
HpyF10VI	GCNNNNNNNGC	5 cut(s)	23, 350, 562, 571, 650
HpyF3I	CTNAG	2 cut(s)	148, 277
Hsp92II	CATG	3 cut(s)	413, 564, 594
KspI	CCGCGG	1 cut(s)	15
Kzo9I	GATC	4 cut(s)	320, 337, 581, 595
LpnPI	CCDG	9 cut(s)	55, 73, 102, 237, 283, 396, 404, 531, 700
Lsp1109I	GCAGC	1 cut(s)	356
LweI	GCATC	1 cut(s)	701
MaeI	CTAG	1 cut(s)	761
MaeIII	GTNAC	1 cut(s)	434
MalI	GATC	4 cut(s)	322, 339, 583, 597
MboI	GATC	4 cut(s)	320, 337, 581, 595
MflI	RGATCY	3 cut(s)	337, 581, 595
MlsI	TGGCCA	1 cut(s)	644
MluCI	AATT	2 cut(s)	216, 471
MluNI	TGGCCA	1 cut(s)	644
MlyI	GAGTC	2 cut(s)	72, 282
MmeI	TCCRAC	1 cut(s)	587
MnlI	CCTC	9 cut(s)	14, 73, 83, 86, 246, 478, 617, 622, 679
Mox20I	TGGCCA	1 cut(s)	644
MscI	TGGCCA	1 cut(s)	644
MseI	TTAA	1 cut(s)	676
Msp20I	TGGCCA	1 cut(s)	644
MspA1I	CMGCKG	1 cut(s)	14
MspCI	CTTAAG	1 cut(s)	675
MspI	CCGG	2 cut(s)	42, 224
Mva1269I	GAATGC	1 cut(s)	149
MvnI	CGCG	1 cut(s)	14
MwoI	GCNNNNNNNGC	5 cut(s)	23, 350, 562, 571, 650
NdeI	CATATG	1 cut(s)	431
NdeII	GATC	4 cut(s)	320, 337, 581, 595
NlaIII	CATG	3 cut(s)	413, 564, 594
NlaIV	GGNNCC	3 cut(s)	58, 661, 690
NmuCI	GTSAC	1 cut(s)	434
NspI	RCATGY	1 cut(s)	413
PaeR7I	CTCGAG	1 cut(s)	27
PctI	GAATGC	1 cut(s)	149
PfeI	GAWTC	2 cut(s)	256, 514
PflMI	CCANNNNNTGG	1 cut(s)	669
PinAI	ACCGGT	1 cut(s)	41
PkrI	GCNGC	4 cut(s)	13, 16, 131, 346
PleI	GAGTC	2 cut(s)	71, 281
PpsI	GAGTC	2 cut(s)	71, 281
PspN4I	GGNNCC	3 cut(s)	58, 661, 690
PspPI	GGNCC	2 cut(s)	221, 609
PstNI	CAGNNNCTG	1 cut(s)	66
PsuI	RGATCY	3 cut(s)	337, 581, 595
RsaI	GTAC	2 cut(s)	186, 198
RsaNI	GTAC	2 cut(s)	185, 197
SacII	CCGCGG	1 cut(s)	15
SaqAI	TTAA	1 cut(s)	676
SatI	GCNGC	4 cut(s)	12, 15, 130, 345
Sau3AI	GATC	4 cut(s)	320, 337, 581, 595
Sau96I	GGNCC	2 cut(s)	221, 609
SchI	GAGTC	2 cut(s)	72, 282
SfaNI	GCATC	1 cut(s)	701
Sfr274I	CTCGAG	1 cut(s)	27
Sfr303I	CCGCGG	1 cut(s)	15
SgrBI	CCGCGG	1 cut(s)	15
SinI	GGWCC	2 cut(s)	221, 609
SlaI	CTCGAG	1 cut(s)	27
SmlI	CTYRAG	3 cut(s)	27, 654, 675
SmoI	CTYRAG	3 cut(s)	27, 654, 675
Sse9I	AATT	2 cut(s)	216, 471
SsiI	CCGC	3 cut(s)	12, 14, 130
SspMI	CTAG	1 cut(s)	761
StyI	CCWWGG	1 cut(s)	190
TaaI	ACNGT	3 cut(s)	184, 605, 723
TaqI	TCGA	1 cut(s)	28
TasI	AATT	2 cut(s)	216, 471
TatI	WGTACW	1 cut(s)	184
TauI	GCSGC	3 cut(s)	14, 17, 132
TfiI	GAWTC	2 cut(s)	256, 514
Tru1I	TTAA	1 cut(s)	676
Tru9I	TTAA	1 cut(s)	676
TseFI	GTSAC	1 cut(s)	434
TseI	GCWGC	1 cut(s)	344
Tsp45I	GTSAC	1 cut(s)	434
TspDTI	ATGAA	1 cut(s)	229
TspGWI	ACGGA	2 cut(s)	291, 591
Van91I	CCANNNNNTGG	1 cut(s)	669
Vha464I	CTTAAG	1 cut(s)	675
VpaK11BI	GGWCC	2 cut(s)	221, 609
XceI	RCATGY	1 cut(s)	413
XhoI	CTCGAG	1 cut(s)	27
XspI	CTAG	1 cut(s)	761

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.