Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0001527

Physical Location & Seq

Genomic Coordinates Forward (+)

13252611 .. 13255607

Gene Structure 2997 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1146200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGTTTTCGTTTCTTTGGATGGGTGAAGAAGTCAAGGTTGTGGTTCCAGAGTCCGTGTTGAAAAAGAGGAAGAGGGAAGAGGAATGGGCCTTGGCCAAGGAACAGGAGCGTGTTGCTGCCAACAAGAAGAAGGCTGAGAACCGGAAACTCATTTACAACAGAGCAAAGCAGTATTCTGAGGAGTATGAGCAGCAGGAGAAAGAGTTGATTCAGTTGAAGCGTGAAGCTAAGTTGAAAGGTGGATTTTATGTTGACCCAGAGGCTAAACTCTTGTTCATTATTCGTATCCGTGGTATCAACGCCATTGACCCAAAGACCAAGAAGATTTTGCAACTCTTGAGGCTAAGACAGATCTTCAATGGAGTCTTCCTGAAAGTTAACAAGGCCACCCTCAATATGCTTCACAGGGTTGAGCCATATGTTACTTACGGATACCCCAACTTGAAGAGCGTCAAGGAATTGATCTACAAGAGAGGCTACGGGAAGCTAAACAAGCAGAGGATTGCCTTGACTGACAACGCCATTGTTGAGGAGGCTCTCGGCAAGTTTGGCATTATCTGCACGGAAGATCTTATTCACGAGATCTTGACAGTTGGTCCTCATTTCAAGGAGGCCAATAACTTTCTATGGCCATTTAAGCTGAAGGCACCACTGGGTGGTCTTAAGAAGAAGAGGAACCACTACGTTGAAGGAGGAGATGCCGGAAACCGTGAGAACTACATCAACGAGCTTATCAGGAGAATGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L30 Ribosomal_L30_N

Protein Analysis

250

Amino Acids

29.15

Weight (kDa)

9.77

Isoelectric Point (pI)

41.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L30_N	PF08079	15 - 86	2.5e-23	Ribosomal L30 N-terminal domain
Ribosomal_L30	PF00327	91 - 141	1.6e-17	Ribosomal protein L30p/L7e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001527)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01250 AT2G01250 AT2G44120 AT2G44120 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580
fragaria_vesca	FvH4_6g37170 FvH4_6g37320 FvH4_6g37320
malus_domestica	MD09G1160400.v1.1 MD16G1246400.v1.1 MD17G1146200.v1.1
prunus_persica	Prupe.1G073100_v2.0.a1 Prupe.3G019000_v2.0.a1
pyrus_communis	pycom09g07900 pycom16g20690
rosa_chinensis	RchiOBHm_Chr2g0149791 RchiOBHm_Chr2g0150141
rosa_laevigata	RLG00000020445 RLG00000020470 RLG00000034320
rosa_multiflora	Rmu_sc0002002.1_g000018 Rmu_sc0009445.1_g000002 Rmu_sc0018143.1_g000004 Rmu_sc0019102.1_g000006 Rmu_ssc0000020.1_g000014
rosa_roxburghii	Rroxscaffold_2G00097410 Rroxscaffold_2G00097690
rosa_rugosa	Rorug02G0416300 Rorug02G0416400 Rorug02G0416400 Rorug02G0416500 Rorug02G0419400 Rorug04G0013800
rosa_samantha	Rh2AG478100 Rh2BG487200 Rh2BG490700 Rh2CG461300 Rh2CG464300 Rh2DG496300 Rh2DG499500 Rh4BG089300
rosa_wichuraiana	Rw2G038780 Rw2G039030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	646
AccB7I	CCANNNNNTGG	1 cut(s)	656
AcoI	YGGCCR	2 cut(s)	93, 629
AcuI	CTGAAG	1 cut(s)	662
AdeI	CACNNNGTG	1 cut(s)	656
AfiI	CCNNNNNNNGG	1 cut(s)	656
AflII	CTTAAG	1 cut(s)	662
AgsI	TTSAA	7 cut(s)	61, 217, 235, 358, 445, 607, 689
AhdI	GACNNNNNGTC	1 cut(s)	594
AluBI	AGCT	4 cut(s)	227, 487, 640, 730
AluI	AGCT	4 cut(s)	227, 487, 640, 730
AoxI	GGCC	5 cut(s)	87, 93, 384, 612, 629
ApeKI	GCWGC	2 cut(s)	116, 190
AspS9I	GGNCC	2 cut(s)	87, 596
AsuHPI	GGTGA	1 cut(s)	35
AvaII	GGWCC	1 cut(s)	596
BalI	TGGCCA	2 cut(s)	95, 631
BanI	GGYRCC	1 cut(s)	646
BauI	CACGAG	1 cut(s)	578
BbsI	GAAGAC	1 cut(s)	358
BbvI	GCAGC	2 cut(s)	103, 202
BccI	CCATC	1 cut(s)	13
BciVI	GTATCC	2 cut(s)	296, 425
BfrI	CTTAAG	1 cut(s)	662
BfuI	GTATCC	2 cut(s)	296, 425
BglII	AGATCT	3 cut(s)	351, 568, 582
BisI	GCNGC	2 cut(s)	117, 191
BlsI	GCNGC	2 cut(s)	118, 192
Bme18I	GGWCC	1 cut(s)	596
BmeRI	GACNNNNNGTC	1 cut(s)	594
BmgT120I	GGNCC	2 cut(s)	87, 596
BmiI	GGNNCC	3 cut(s)	45, 648, 677
BmrI	ACTGGG	1 cut(s)	662
BmsI	GCATC	1 cut(s)	688
BmuI	ACTGGG	1 cut(s)	662
BpiI	GAAGAC	1 cut(s)	358
BpuEI	CTTGAG	1 cut(s)	358
BsaJI	CCNNGG	3 cut(s)	90, 96, 289
BsaWI	WCCGGW	1 cut(s)	141
BsaXI	ACNNNNNCTCC	2 cut(s)	188, 218
Bsc4I	CCNNNNNNNGG	1 cut(s)	656
Bse1I	ACTGG	1 cut(s)	657
BseDI	CCNNGG	3 cut(s)	90, 96, 289
BseGI	GGATG	1 cut(s)	24
BseLI	CCNNNNNNNGG	1 cut(s)	656
BseMII	CTCAG	2 cut(s)	126, 168
BseNI	ACTGG	1 cut(s)	657
BseRI	GAGGAG	3 cut(s)	194, 545, 708
BseXI	GCAGC	2 cut(s)	103, 202
BsgI	GTGCAG	1 cut(s)	544
BshFI	GGCC	5 cut(s)	89, 95, 386, 614, 631
BshNI	GGYRCC	1 cut(s)	646
BsiSI	CCGG	2 cut(s)	142, 702
BslI	CCNNNNNNNGG	1 cut(s)	656
BsnI	GGCC	5 cut(s)	89, 95, 386, 614, 631
Bsp143I	GATC	4 cut(s)	351, 462, 568, 582
BspANI	GGCC	5 cut(s)	89, 95, 386, 614, 631
BspCNI	CTCAG	2 cut(s)	127, 169
BspLI	GGNNCC	3 cut(s)	45, 648, 677
BspQI	GCTCTTC	1 cut(s)	440
BspT107I	GGYRCC	1 cut(s)	646
BspTI	CTTAAG	1 cut(s)	662
BsrI	ACTGG	1 cut(s)	657
BssECI	CCNNGG	3 cut(s)	90, 96, 289
BssMI	GATC	4 cut(s)	351, 462, 568, 582
BssSI	CACGAG	1 cut(s)	578
BssT1I	CCWWGG	2 cut(s)	90, 96
Bst2BI	CACGAG	1 cut(s)	578
Bst4CI	ACNGT	2 cut(s)	592, 710
Bst6I	CTCTTC	4 cut(s)	65, 72, 440, 665
BstAFI	CTTAAG	1 cut(s)	662
BstAPI	GCANNNNNTGC	1 cut(s)	558
BstDEI	CTNAG	4 cut(s)	135, 177, 228, 344
BstDSI	CCRYGG	1 cut(s)	289
BstF5I	GGATG	1 cut(s)	24
BstKTI	GATC	4 cut(s)	354, 465, 571, 585
BstMBI	GATC	4 cut(s)	351, 462, 568, 582
BstMWI	GCNNNNNNNGC	4 cut(s)	493, 549, 558, 637
BstV1I	GCAGC	2 cut(s)	103, 202
BstV2I	GAAGAC	1 cut(s)	358
BstX2I	RGATCY	3 cut(s)	351, 568, 582
BstYI	RGATCY	3 cut(s)	351, 568, 582
BsuI	GTATCC	2 cut(s)	296, 425
BsuRI	GGCC	5 cut(s)	89, 95, 386, 614, 631
BtgI	CCRYGG	1 cut(s)	289
BtsCI	GGATG	1 cut(s)	24
BtsIMutI	CAGTG	1 cut(s)	650
Cfr13I	GGNCC	2 cut(s)	87, 596
CseI	GACGC	1 cut(s)	439
DdeI	CTNAG	4 cut(s)	135, 177, 228, 344
DpnI	GATC	4 cut(s)	353, 464, 570, 584
DpnII	GATC	4 cut(s)	351, 462, 568, 582
DraIII	CACNNNGTG	1 cut(s)	656
DriI	GACNNNNNGTC	1 cut(s)	594
EaeI	YGGCCR	2 cut(s)	93, 629
Eam1104I	CTCTTC	4 cut(s)	65, 72, 440, 665
Eam1105I	GACNNNNNGTC	1 cut(s)	594
EarI	CTCTTC	4 cut(s)	65, 72, 440, 665
Eco130I	CCWWGG	2 cut(s)	90, 96
Eco47I	GGWCC	1 cut(s)	596
Eco57I	CTGAAG	1 cut(s)	662
EcoT14I	CCWWGG	2 cut(s)	90, 96
ErhI	CCWWGG	2 cut(s)	90, 96
FaiI	YATR	6 cut(s)	186, 249, 398, 418, 420, 628
FauNDI	CATATG	1 cut(s)	418
Fnu4HI	GCNGC	2 cut(s)	117, 191
FokI	GGATG	1 cut(s)	31
Fsp4HI	GCNGC	2 cut(s)	117, 191
GluI	GCNGC	2 cut(s)	117, 191
HaeIII	GGCC	5 cut(s)	89, 95, 386, 614, 631
HapII	CCGG	2 cut(s)	142, 702
HgaI	GACGC	1 cut(s)	439
HincII	GTYRAC	2 cut(s)	253, 379
HindII	GTYRAC	2 cut(s)	253, 379
HinfI	GANTC	3 cut(s)	50, 208, 363
HpaI	GTTAAC	1 cut(s)	379
HpaII	CCGG	2 cut(s)	142, 702
HphI	GGTGA	1 cut(s)	35
Hpy166II	GTNNAC	2 cut(s)	253, 379
Hpy188I	TCNGA	1 cut(s)	178
Hpy188III	TCNNGA	6 cut(s)	47, 337, 370, 578, 586, 736
Hpy8I	GTNNAC	2 cut(s)	253, 379
HpyAV	CCTTC	3 cut(s)	124, 637, 683
HpyCH4III	ACNGT	2 cut(s)	592, 710
HpyCH4IV	ACGT	1 cut(s)	684
HpyCH4V	TGCA	2 cut(s)	331, 561
HpyF10VI	GCNNNNNNNGC	4 cut(s)	493, 549, 558, 637
HpyF3I	CTNAG	4 cut(s)	135, 177, 228, 344
HpySE526I	ACGT	1 cut(s)	684
KspAI	GTTAAC	1 cut(s)	379
Kzo9I	GATC	4 cut(s)	351, 462, 568, 582
LguI	GCTCTTC	1 cut(s)	440
LmnI	GCTCC	1 cut(s)	106
Lsp1109I	GCAGC	2 cut(s)	103, 202
LweI	GCATC	1 cut(s)	688
MaeII	ACGT	1 cut(s)	684
MaeIII	GTNAC	1 cut(s)	421
MalI	GATC	4 cut(s)	353, 464, 570, 584
MboI	GATC	4 cut(s)	351, 462, 568, 582
MflI	RGATCY	3 cut(s)	351, 568, 582
MlsI	TGGCCA	2 cut(s)	95, 631
MluCI	AATT	2 cut(s)	458, 745
MluNI	TGGCCA	2 cut(s)	95, 631
MlyI	GAGTC	2 cut(s)	59, 372
Mox20I	TGGCCA	2 cut(s)	95, 631
MscI	TGGCCA	2 cut(s)	95, 631
MseI	TTAA	3 cut(s)	378, 636, 663
Msp20I	TGGCCA	2 cut(s)	95, 631
MspCI	CTTAAG	1 cut(s)	662
MspI	CCGG	2 cut(s)	142, 702
MwoI	GCNNNNNNNGC	4 cut(s)	493, 549, 558, 637
NdeI	CATATG	1 cut(s)	418
NdeII	GATC	4 cut(s)	351, 462, 568, 582
NlaIV	GGNNCC	3 cut(s)	45, 648, 677
NmeAIII	GCCGAG	1 cut(s)	519
PciSI	GCTCTTC	1 cut(s)	440
PfeI	GAWTC	1 cut(s)	208
PflMI	CCANNNNNTGG	1 cut(s)	656
PkrI	GCNGC	2 cut(s)	118, 192
PleI	GAGTC	2 cut(s)	58, 371
PpsI	GAGTC	2 cut(s)	58, 371
PspN4I	GGNNCC	3 cut(s)	45, 648, 677
PspPI	GGNCC	2 cut(s)	87, 596
PsuI	RGATCY	3 cut(s)	351, 568, 582
SapI	GCTCTTC	1 cut(s)	440
SaqAI	TTAA	3 cut(s)	378, 636, 663
SatI	GCNGC	2 cut(s)	117, 191
Sau3AI	GATC	4 cut(s)	351, 462, 568, 582
Sau96I	GGNCC	2 cut(s)	87, 596
SchI	GAGTC	2 cut(s)	59, 372
SetI	ASST	7 cut(s)	39, 229, 241, 489, 642, 687, 732
SfaNI	GCATC	1 cut(s)	688
SinI	GGWCC	1 cut(s)	596
SmlI	CTYRAG	2 cut(s)	337, 662
SmoI	CTYRAG	2 cut(s)	337, 662
Sse9I	AATT	2 cut(s)	458, 745
StyI	CCWWGG	2 cut(s)	90, 96
TaaI	ACNGT	2 cut(s)	592, 710
TaiI	ACGT	1 cut(s)	687
TasI	AATT	2 cut(s)	458, 745
TfiI	GAWTC	1 cut(s)	208
Tru1I	TTAA	3 cut(s)	378, 636, 663
Tru9I	TTAA	3 cut(s)	378, 636, 663
TscAI	CASTG	1 cut(s)	657
TseI	GCWGC	2 cut(s)	116, 190
TspDTI	ATGAA	1 cut(s)	265
TspGWI	ACGGA	4 cut(s)	43, 278, 444, 578
TspRI	CASTG	1 cut(s)	657
Van91I	CCANNNNNTGG	1 cut(s)	656
Vha464I	CTTAAG	1 cut(s)	662
VpaK11BI	GGWCC	1 cut(s)	596

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.