Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019102.1

Orthogroup ID

OG0001527

Physical Location & Seq

Genomic Coordinates Forward (+)

19502 .. 22315

Gene Structure 2814 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019102.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

atgcacagtgcctacttccccaaacgcatcttgatctcctccacattagccacgcttttaacggcgccgaccaagtggatccacgtcgtcggagtcatgtcacccgccgataaagccctcaaccctcaccattcgaagccgcggcgacctcagctcgagatgggtgaagcagtcaaggttgtggttccagagtctgtcctaaagaagaggaagagagaggaggaatgggccttggcaaagaagcaggggctagaagctgccaagaaattgaactctgagaataggaaacttatttacaacaaatccaaacagtacaccaaggagtacgcagagaaggacaatgaattggtccggttgaagcgtgaagcaaggctgaaaggaggattctatgtcgagccagagtctaagctcttgtttatcattcgtatccgtggtatcaatgccattgatccaaagactaagaagatcttgcagcttttgcgtttgagacagatattcaatggtgtcttcctgaaagtaaacaaggccaccttgaacatgcttcacagggttgagccatatgtcacttatggataccccaacttgaagagtgtcaaggaattgatttacaagaggggttatggcaagttgaacaagcagagaattgccttgactgataactctgttgttgaacagggtttgggcaagcatggcattatctgcactgaggatcttattcacgagatcttgacagttggacctcattttaaggaggccaacaactttctgtggccatttaagctcaaggcaccattgggtggtcttaagaagaagaggaaccattatgttgaaggtggagatgctggaaaccgtgagaactacatcaatgagcttattaggagaatgaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L30 Ribosomal_L30_N

Protein Analysis

296

Amino Acids

34.08

Weight (kDa)

10.05

Isoelectric Point (pI)

43.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001527)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01250 AT2G01250 AT2G44120 AT2G44120 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580
fragaria_vesca	FvH4_6g37170 FvH4_6g37320 FvH4_6g37320
malus_domestica	MD09G1160400.v1.1 MD16G1246400.v1.1 MD17G1146200.v1.1
prunus_persica	Prupe.1G073100_v2.0.a1 Prupe.3G019000_v2.0.a1
pyrus_communis	pycom09g07900 pycom16g20690
rosa_chinensis	RchiOBHm_Chr2g0149791 RchiOBHm_Chr2g0150141
rosa_laevigata	RLG00000020445 RLG00000020470 RLG00000034320
rosa_multiflora	Rmu_sc0002002.1_g000018 Rmu_sc0009445.1_g000002 Rmu_sc0018143.1_g000004 Rmu_sc0019102.1_g000006 Rmu_ssc0000020.1_g000014
rosa_roxburghii	Rroxscaffold_2G00097410 Rroxscaffold_2G00097690
rosa_rugosa	Rorug02G0416300 Rorug02G0416400 Rorug02G0416400 Rorug02G0416500 Rorug02G0419400 Rorug04G0013800
rosa_samantha	Rh2AG478100 Rh2BG487200 Rh2BG490700 Rh2CG461300 Rh2CG464300 Rh2DG496300 Rh2DG499500 Rh4BG089300
rosa_wichuraiana	Rw2G038780 Rw2G039030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	64, 787
AccB7I	CCANNNNNTGG	1 cut(s)	797
AccII	CGCG	1 cut(s)	142
AciI	CCGC	3 cut(s)	105, 140, 142
AclWI	GGATC	4 cut(s)	73, 86, 443, 717
AcoI	YGGCCR	1 cut(s)	770
AcyI	GRCGYC	1 cut(s)	65
AfaI	GTAC	2 cut(s)	314, 326
AfiI	CCNNNNNNNGG	1 cut(s)	797
AflII	CTTAAG	1 cut(s)	803
AgsI	TTSAA	8 cut(s)	271, 358, 499, 535, 586, 631, 671, 830
AjiI	CACGTC	1 cut(s)	85
AluBI	AGCT	6 cut(s)	154, 257, 409, 475, 781, 871
AluI	AGCT	6 cut(s)	154, 257, 409, 475, 781, 871
Alw26I	GTCTC	1 cut(s)	481
AlwI	GGATC	4 cut(s)	73, 86, 443, 717
AlwNI	CAGNNNCTG	1 cut(s)	194
Ama87I	CYCGRG	1 cut(s)	155
AoxI	GGCC	4 cut(s)	228, 525, 753, 770
ApeKI	GCWGC	2 cut(s)	257, 472
AspLEI	GCGC	1 cut(s)	67
AspS9I	GGNCC	3 cut(s)	228, 349, 737
AsuHPI	GGTGA	3 cut(s)	93, 119, 176
AsuII	TTCGAA	1 cut(s)	134
AvaI	CYCGRG	1 cut(s)	155
AvaII	GGWCC	2 cut(s)	349, 737
BalI	TGGCCA	1 cut(s)	772
BamHI	GGATCC	1 cut(s)	78
BanI	GGYRCC	2 cut(s)	64, 787
BauI	CACGAG	1 cut(s)	719
BbsI	GAAGAC	1 cut(s)	499
BbvCI	CCTCAGC	1 cut(s)	150
BbvI	GCAGC	2 cut(s)	244, 484
BccI	CCATC	1 cut(s)	154
BceAI	ACGGC	1 cut(s)	78
BciVI	GTATCC	2 cut(s)	437, 566
BcoDI	GTCTC	1 cut(s)	481
BfaI	CTAG	2 cut(s)	251, 889
BfoI	RGCGCY	1 cut(s)	68
BfrI	CTTAAG	1 cut(s)	803
BfuI	GTATCC	2 cut(s)	437, 566
BglII	AGATCT	2 cut(s)	465, 723
BisI	GCNGC	4 cut(s)	140, 143, 258, 473
BlsI	GCNGC	4 cut(s)	141, 144, 259, 474
Bme18I	GGWCC	2 cut(s)	349, 737
BmeT110I	CYCGRG	1 cut(s)	155
BmgBI	CACGTC	1 cut(s)	85
BmgT120I	GGNCC	3 cut(s)	228, 349, 737
BmiI	GGNNCC	5 cut(s)	66, 80, 186, 789, 818
BmsI	GCATC	2 cut(s)	36, 829
BpiI	GAAGAC	1 cut(s)	499
Bpu10I	CCTNAGC	1 cut(s)	150
Bpu14I	TTCGAA	1 cut(s)	134
BpuEI	CTTGAG	1 cut(s)	767
BsaHI	GRCGYC	1 cut(s)	65
BsaJI	CCNNGG	4 cut(s)	140, 231, 318, 430
BsaWI	WCCGGW	1 cut(s)	351
Bsc4I	CCNNNNNNNGG	1 cut(s)	797
BseDI	CCNNGG	4 cut(s)	140, 231, 318, 430
BseLI	CCNNNNNNNGG	1 cut(s)	797
BseMII	CTCAG	3 cut(s)	164, 267, 696
BseRI	GAGGAG	2 cut(s)	28, 233
BseXI	GCAGC	2 cut(s)	244, 484
BsgI	GTGCAG	1 cut(s)	685
Bsh1236I	CGCG	1 cut(s)	142
BshFI	GGCC	4 cut(s)	230, 527, 755, 772
BshNI	GGYRCC	2 cut(s)	64, 787
BsiHKCI	CYCGRG	1 cut(s)	155
BsiSI	CCGG	1 cut(s)	352
BslI	CCNNNNNNNGG	1 cut(s)	797
BsmAI	GTCTC	1 cut(s)	481
BsnI	GGCC	4 cut(s)	230, 527, 755, 772
BsoBI	CYCGRG	1 cut(s)	155
Bsp119I	TTCGAA	1 cut(s)	134
Bsp143I	GATC	6 cut(s)	33, 78, 448, 465, 709, 723
BspACI	CCGC	3 cut(s)	105, 140, 142
BspANI	GGCC	4 cut(s)	230, 527, 755, 772
BspCNI	CTCAG	3 cut(s)	163, 268, 697
BspFNI	CGCG	1 cut(s)	142
BspLI	GGNNCC	5 cut(s)	66, 80, 186, 789, 818
BspPI	GGATC	4 cut(s)	73, 86, 443, 717
BspT104I	TTCGAA	1 cut(s)	134
BspT107I	GGYRCC	2 cut(s)	64, 787
BspTI	CTTAAG	1 cut(s)	803
BssECI	CCNNGG	4 cut(s)	140, 231, 318, 430
BssMI	GATC	6 cut(s)	33, 78, 448, 465, 709, 723
BssNI	GRCGYC	1 cut(s)	65
BssSI	CACGAG	1 cut(s)	719
BssT1I	CCWWGG	2 cut(s)	231, 318
Bst2BI	CACGAG	1 cut(s)	719
Bst4CI	ACNGT	4 cut(s)	8, 312, 733, 851
Bst6I	CTCTTC	4 cut(s)	200, 206, 581, 806
BstACI	GRCGYC	1 cut(s)	65
BstAFI	CTTAAG	1 cut(s)	803
BstAPI	GCANNNNNTGC	2 cut(s)	478, 699
BstBI	TTCGAA	1 cut(s)	134
BstC8I	GCNNGC	1 cut(s)	686
BstDEI	CTNAG	5 cut(s)	150, 276, 405, 459, 705
BstDSI	CCRYGG	2 cut(s)	140, 430
BstFNI	CGCG	1 cut(s)	142
BstH2I	RGCGCY	1 cut(s)	68
BstHHI	GCGC	1 cut(s)	67
BstKTI	GATC	6 cut(s)	36, 81, 451, 468, 712, 726
BstMAI	GTCTC	1 cut(s)	481
BstMBI	GATC	6 cut(s)	33, 78, 448, 465, 709, 723
BstMWI	GCNNNNNNNGC	6 cut(s)	113, 151, 478, 690, 699, 778
BstNSI	RCATGY	1 cut(s)	541
BstUI	CGCG	1 cut(s)	142
BstV1I	GCAGC	2 cut(s)	244, 484
BstV2I	GAAGAC	1 cut(s)	499
BstX2I	RGATCY	4 cut(s)	78, 465, 709, 723
BstYI	RGATCY	4 cut(s)	78, 465, 709, 723
BsuI	GTATCC	2 cut(s)	437, 566
BsuRI	GGCC	4 cut(s)	230, 527, 755, 772
BtgI	CCRYGG	2 cut(s)	140, 430
BtrI	CACGTC	1 cut(s)	85
BtsIMutI	CAGTG	2 cut(s)	13, 702
Cac8I	GCNNGC	1 cut(s)	686
CaiI	CAGNNNCTG	1 cut(s)	194
CfoI	GCGC	1 cut(s)	67
Cfr13I	GGNCC	3 cut(s)	228, 349, 737
Cfr42I	CCGCGG	1 cut(s)	143
Csp6I	GTAC	2 cut(s)	313, 325
CviAII	CATG	3 cut(s)	97, 538, 689
CviQI	GTAC	2 cut(s)	313, 325
DdeI	CTNAG	5 cut(s)	150, 276, 405, 459, 705
DinI	GGCGCC	1 cut(s)	66
DpnI	GATC	6 cut(s)	35, 80, 450, 467, 711, 725
DpnII	GATC	6 cut(s)	33, 78, 448, 465, 709, 723
EaeI	YGGCCR	1 cut(s)	770
Eam1104I	CTCTTC	4 cut(s)	200, 206, 581, 806
EarI	CTCTTC	4 cut(s)	200, 206, 581, 806
Eco130I	CCWWGG	2 cut(s)	231, 318
Eco47I	GGWCC	2 cut(s)	349, 737
Eco88I	CYCGRG	1 cut(s)	155
EcoT14I	CCWWGG	2 cut(s)	231, 318
EgeI	GGCGCC	1 cut(s)	66
EheI	GGCGCC	1 cut(s)	66
ErhI	CCWWGG	2 cut(s)	231, 318
FaeI	CATG	3 cut(s)	100, 541, 692
FaiI	YATR	9 cut(s)	98, 390, 539, 559, 561, 570, 621, 690, 825
FalI	AAGNNNNNCTT	4 cut(s)	452, 484, 515, 547
FatI	CATG	3 cut(s)	96, 537, 688
FauI	CCCGC	1 cut(s)	112
FauNDI	CATATG	1 cut(s)	559
Fnu4HI	GCNGC	4 cut(s)	140, 143, 258, 473
Fsp4HI	GCNGC	4 cut(s)	140, 143, 258, 473
FspBI	CTAG	2 cut(s)	251, 889
GlaI	GCGC	1 cut(s)	66
GluI	GCNGC	4 cut(s)	140, 143, 258, 473
HaeII	RGCGCY	1 cut(s)	68
HaeIII	GGCC	4 cut(s)	230, 527, 755, 772
HapII	CCGG	1 cut(s)	352
HhaI	GCGC	1 cut(s)	67
Hin1I	GRCGYC	1 cut(s)	65
Hin1II	CATG	3 cut(s)	100, 541, 692
Hin6I	GCGC	1 cut(s)	65
HinP1I	GCGC	1 cut(s)	65
HinfI	GANTC	4 cut(s)	93, 191, 384, 401
HpaII	CCGG	1 cut(s)	352
HphI	GGTGA	3 cut(s)	93, 119, 176
Hpy166II	GTNNAC	2 cut(s)	315, 520
Hpy188I	TCNGA	2 cut(s)	92, 277
Hpy188III	TCNNGA	6 cut(s)	31, 157, 188, 511, 719, 727
Hpy8I	GTNNAC	2 cut(s)	315, 520
Hpy99I	CGWCG	2 cut(s)	89, 92
HpyAV	CCTTC	2 cut(s)	328, 824
HpyCH4III	ACNGT	4 cut(s)	8, 312, 733, 851
HpyCH4IV	ACGT	1 cut(s)	84
HpyCH4V	TGCA	3 cut(s)	4, 472, 702
HpyF10VI	GCNNNNNNNGC	6 cut(s)	113, 151, 478, 690, 699, 778
HpyF3I	CTNAG	5 cut(s)	150, 276, 405, 459, 705
HpySE526I	ACGT	1 cut(s)	84
Hsp92I	GRCGYC	1 cut(s)	65
Hsp92II	CATG	3 cut(s)	100, 541, 692
HspAI	GCGC	1 cut(s)	65
KasI	GGCGCC	1 cut(s)	64
KspI	CCGCGG	1 cut(s)	143
Kzo9I	GATC	6 cut(s)	33, 78, 448, 465, 709, 723
LpnPI	CCDG	8 cut(s)	201, 230, 365, 411, 524, 532, 659, 828
Lsp1109I	GCAGC	2 cut(s)	244, 484
LweI	GCATC	2 cut(s)	36, 829
MaeI	CTAG	2 cut(s)	251, 889
MaeII	ACGT	1 cut(s)	84
MaeIII	GTNAC	2 cut(s)	99, 562
MalI	GATC	6 cut(s)	35, 80, 450, 467, 711, 725
MboI	GATC	6 cut(s)	33, 78, 448, 465, 709, 723
MboII	GAAGA	7 cut(s)	217, 223, 475, 499, 598, 820, 823
MflI	RGATCY	4 cut(s)	78, 465, 709, 723
MlsI	TGGCCA	1 cut(s)	772
MluCI	AATT	4 cut(s)	266, 344, 599, 642
MluNI	TGGCCA	1 cut(s)	772
Mly113I	GGCGCC	1 cut(s)	65
MlyI	GAGTC	3 cut(s)	102, 200, 410
MmeI	TCCRAC	2 cut(s)	70, 715
Mox20I	TGGCCA	1 cut(s)	772
MscI	TGGCCA	1 cut(s)	772
MseI	TTAA	4 cut(s)	59, 747, 777, 804
Msp20I	TGGCCA	1 cut(s)	772
MspA1I	CMGCKG	1 cut(s)	142
MspCI	CTTAAG	1 cut(s)	803
MspI	CCGG	1 cut(s)	352
MvnI	CGCG	1 cut(s)	142
MwoI	GCNNNNNNNGC	6 cut(s)	113, 151, 478, 690, 699, 778
NarI	GGCGCC	1 cut(s)	65
NdeI	CATATG	1 cut(s)	559
NdeII	GATC	6 cut(s)	33, 78, 448, 465, 709, 723
NlaIII	CATG	3 cut(s)	100, 541, 692
NlaIV	GGNNCC	5 cut(s)	66, 80, 186, 789, 818
NmuCI	GTSAC	2 cut(s)	99, 562
NspI	RCATGY	1 cut(s)	541
NspV	TTCGAA	1 cut(s)	134
PaeR7I	CTCGAG	1 cut(s)	155
PfeI	GAWTC	1 cut(s)	384
PflMI	CCANNNNNTGG	1 cut(s)	797
PkrI	GCNGC	4 cut(s)	141, 144, 259, 474
PleI	GAGTC	3 cut(s)	101, 199, 409
PluTI	GGCGCC	1 cut(s)	68
PpsI	GAGTC	3 cut(s)	101, 199, 409
PspN4I	GGNNCC	5 cut(s)	66, 80, 186, 789, 818
PspPI	GGNCC	3 cut(s)	228, 349, 737
PstNI	CAGNNNCTG	1 cut(s)	194
PsuI	RGATCY	4 cut(s)	78, 465, 709, 723
RsaI	GTAC	2 cut(s)	314, 326
RsaNI	GTAC	2 cut(s)	313, 325
SacII	CCGCGG	1 cut(s)	143
SaqAI	TTAA	4 cut(s)	59, 747, 777, 804
SatI	GCNGC	4 cut(s)	140, 143, 258, 473
Sau3AI	GATC	6 cut(s)	33, 78, 448, 465, 709, 723
Sau96I	GGNCC	3 cut(s)	228, 349, 737
SchI	GAGTC	3 cut(s)	102, 200, 410
SfaNI	GCATC	2 cut(s)	36, 829
SfoI	GGCGCC	1 cut(s)	66
Sfr274I	CTCGAG	1 cut(s)	155
Sfr303I	CCGCGG	1 cut(s)	143
SfuI	TTCGAA	1 cut(s)	134
SgrBI	CCGCGG	1 cut(s)	143
SinI	GGWCC	2 cut(s)	349, 737
SlaI	CTCGAG	1 cut(s)	155
SmlI	CTYRAG	3 cut(s)	155, 782, 803
SmoI	CTYRAG	3 cut(s)	155, 782, 803
Sse9I	AATT	4 cut(s)	266, 344, 599, 642
SsiI	CCGC	3 cut(s)	105, 140, 142
SspDI	GGCGCC	1 cut(s)	64
SspMI	CTAG	2 cut(s)	251, 889
StyI	CCWWGG	2 cut(s)	231, 318
TaaI	ACNGT	4 cut(s)	8, 312, 733, 851
TaiI	ACGT	1 cut(s)	87
TaqI	TCGA	3 cut(s)	134, 156, 393
TasI	AATT	4 cut(s)	266, 344, 599, 642
TatI	WGTACW	1 cut(s)	312
TauI	GCSGC	2 cut(s)	142, 145
TfiI	GAWTC	1 cut(s)	384
Tru1I	TTAA	4 cut(s)	59, 747, 777, 804
Tru9I	TTAA	4 cut(s)	59, 747, 777, 804
TscAI	CASTG	2 cut(s)	13, 709
TseFI	GTSAC	2 cut(s)	99, 562
TseI	GCWGC	2 cut(s)	257, 472
Tsp45I	GTSAC	2 cut(s)	99, 562
TspDTI	ATGAA	1 cut(s)	357
TspGWI	ACGGA	1 cut(s)	419
TspRI	CASTG	2 cut(s)	13, 709
Van91I	CCANNNNNTGG	1 cut(s)	797
Vha464I	CTTAAG	1 cut(s)	803
VpaK11BI	GGWCC	2 cut(s)	349, 737
XceI	RCATGY	1 cut(s)	541
XhoI	CTCGAG	1 cut(s)	155
XspI	CTAG	2 cut(s)	251, 889

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.