Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001527

Physical Location & Seq

Genomic Coordinates Reverse (-)

29251930 .. 29254500

Gene Structure 2571 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g37170.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGGTGAGGCAGTCAAGGTAGTGGTTCCAGAGTCTGTCCTCAAGAAGAGGAAGAGAGAGGATGAATGGGCCTTGGCCAAGAAGCAGGCCCTTGAAGCCGCCAAGAAGAAGAACGCTGCGAACAGGAAGCTTATCTACAACAAAGCCAAGCAGTACACTAAGGAGTATGCTGACAAGGACAACGAGTTGGTCTGTTTGAAGCGTGAGGCTAGGTTGAAAGGAGGTTTCTATGTCGAACCTGAGTCTAAGCTCTTGTTTATCATCCGTATCCGTGGTATCAATGCCATTGACCCAAAGACAAAGAAGATCTTGCAGCTTTTGCGTTTGAGACAGGTCTTCAATGGTGTCTTTCTGAAAGTTAACAAGGCCACCTTGAACATGCTTCACAGGGTTGAGCCATATGTCACTTATGGATACCCCAACTTGAAGAGTGTGAAGGAATTGATTTACAAGAGGGGTTATGGCAAGTTGAACAAGCAGAGAATCGCCTTGACTGATAACTCTGTTGTTGAGCAGGGTTTGGGGAAGCATGGAATTATCTGCACTGAGGATCTTATCCACGAGATCTTGACAGTTGGACCTCATTTCAAGGAGGCCAACAACTTCCTATGGCCCTTTAAGCTGAAGGCTCCATTGGGTGGTCTGAAGAAGAAGAGGAACCATTATGTTGAAGGTGGAGATGCTGGAAACCGTGAAAACTACATCAATGAGCTCATTAGGAGAATGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L30 Ribosomal_L30_N

Protein Analysis

244

Amino Acids

28.0

Weight (kDa)

9.94

Isoelectric Point (pI)

34.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L30_N	PF08079	9 - 80	1.5e-22	Ribosomal L30 N-terminal domain
Ribosomal_L30	PF00327	85 - 135	5e-17	Ribosomal protein L30p/L7e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001527)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01250 AT2G01250 AT2G44120 AT2G44120 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580 AT3G13580
fragaria_vesca	FvH4_6g37170 FvH4_6g37320 FvH4_6g37320
malus_domestica	MD09G1160400.v1.1 MD16G1246400.v1.1 MD17G1146200.v1.1
prunus_persica	Prupe.1G073100_v2.0.a1 Prupe.3G019000_v2.0.a1
pyrus_communis	pycom09g07900 pycom16g20690
rosa_chinensis	RchiOBHm_Chr2g0149791 RchiOBHm_Chr2g0150141
rosa_laevigata	RLG00000020445 RLG00000020470 RLG00000034320
rosa_multiflora	Rmu_sc0002002.1_g000018 Rmu_sc0009445.1_g000002 Rmu_sc0018143.1_g000004 Rmu_sc0019102.1_g000006 Rmu_ssc0000020.1_g000014
rosa_roxburghii	Rroxscaffold_2G00097410 Rroxscaffold_2G00097690
rosa_rugosa	Rorug02G0416300 Rorug02G0416400 Rorug02G0416400 Rorug02G0416500 Rorug02G0419400 Rorug04G0013800
rosa_samantha	Rh2AG478100 Rh2BG487200 Rh2BG490700 Rh2CG461300 Rh2CG464300 Rh2DG496300 Rh2DG499500 Rh4BG089300
rosa_wichuraiana	Rw2G038780 Rw2G039030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	638
AciI	CCGC	1 cut(s)	99
AclWI	GGATC	1 cut(s)	558
AcoI	YGGCCR	1 cut(s)	75
AcuI	CTGAAG	2 cut(s)	644, 665
AfaI	GTAC	1 cut(s)	155
AfiI	CCNNNNNNNGG	1 cut(s)	638
AgsI	TTSAA	9 cut(s)	95, 199, 217, 340, 376, 427, 472, 589, 671
AjuI	GAANNNNNNNTTGG	2 cut(s)	617, 649
AluBI	AGCT	5 cut(s)	130, 250, 316, 622, 712
AluI	AGCT	5 cut(s)	130, 250, 316, 622, 712
Alw21I	GWGCWC	1 cut(s)	714
Alw26I	GTCTC	1 cut(s)	322
AlwI	GGATC	1 cut(s)	558
AlwNI	CAGNNNCTG	1 cut(s)	35
AoxI	GGCC	6 cut(s)	69, 75, 87, 366, 594, 611
ApeKI	GCWGC	2 cut(s)	116, 313
AspS9I	GGNCC	4 cut(s)	69, 88, 578, 612
AsuHPI	GGTGA	1 cut(s)	17
AvaII	GGWCC	1 cut(s)	578
BalI	TGGCCA	1 cut(s)	77
BanII	GRGCYC	1 cut(s)	714
BarI	GAAGNNNNNNTAC	2 cut(s)	119, 151
BauI	CACGAG	1 cut(s)	560
BbsI	GAAGAC	1 cut(s)	328
Bbv12I	GWGCWC	1 cut(s)	714
BbvI	GCAGC	2 cut(s)	103, 325
BciVI	GTATCC	2 cut(s)	278, 407
BcoDI	GTCTC	1 cut(s)	322
BfaI	CTAG	2 cut(s)	210, 730
BfuI	GTATCC	2 cut(s)	278, 407
BglII	AGATCT	2 cut(s)	306, 564
BisI	GCNGC	3 cut(s)	99, 117, 314
BlsI	GCNGC	3 cut(s)	100, 118, 315
Bme18I	GGWCC	1 cut(s)	578
BmgT120I	GGNCC	4 cut(s)	69, 88, 578, 612
BmiI	GGNNCC	3 cut(s)	27, 630, 659
BmsI	GCATC	1 cut(s)	670
BpiI	GAAGAC	1 cut(s)	328
BpuEI	CTTGAG	1 cut(s)	26
BsaJI	CCNNGG	2 cut(s)	72, 271
Bsc4I	CCNNNNNNNGG	1 cut(s)	638
BseDI	CCNNGG	2 cut(s)	72, 271
BseGI	GGATG	2 cut(s)	67, 261
BseLI	CCNNNNNNNGG	1 cut(s)	638
BseMII	CTCAG	2 cut(s)	231, 537
BseXI	GCAGC	2 cut(s)	103, 325
BsgI	GTGCAG	1 cut(s)	526
BshFI	GGCC	6 cut(s)	71, 77, 89, 368, 596, 613
BsiHKAI	GWGCWC	1 cut(s)	714
BslI	CCNNNNNNNGG	1 cut(s)	638
BsmAI	GTCTC	1 cut(s)	322
BsnI	GGCC	6 cut(s)	71, 77, 89, 368, 596, 613
Bsp1286I	GDGCHC	1 cut(s)	714
Bsp143I	GATC	3 cut(s)	306, 550, 564
BspACI	CCGC	1 cut(s)	99
BspANI	GGCC	6 cut(s)	71, 77, 89, 368, 596, 613
BspCNI	CTCAG	2 cut(s)	232, 538
BspLI	GGNNCC	3 cut(s)	27, 630, 659
BspPI	GGATC	1 cut(s)	558
BssECI	CCNNGG	2 cut(s)	72, 271
BssMI	GATC	3 cut(s)	306, 550, 564
BssSI	CACGAG	1 cut(s)	560
BssT1I	CCWWGG	1 cut(s)	72
Bst2BI	CACGAG	1 cut(s)	560
Bst4CI	ACNGT	2 cut(s)	574, 692
Bst6I	CTCTTC	4 cut(s)	41, 47, 422, 647
BstAPI	GCANNNNNTGC	1 cut(s)	319
BstC8I	GCNNGC	1 cut(s)	87
BstDEI	CTNAG	4 cut(s)	159, 240, 246, 546
BstDSI	CCRYGG	1 cut(s)	271
BstF5I	GGATG	2 cut(s)	67, 261
BstKTI	GATC	3 cut(s)	309, 553, 567
BstMAI	GTCTC	1 cut(s)	322
BstMBI	GATC	3 cut(s)	306, 550, 564
BstMWI	GCNNNNNNNGC	3 cut(s)	95, 319, 619
BstNSI	RCATGY	1 cut(s)	382
BstV1I	GCAGC	2 cut(s)	103, 325
BstV2I	GAAGAC	1 cut(s)	328
BstX2I	RGATCY	3 cut(s)	306, 550, 564
BstYI	RGATCY	3 cut(s)	306, 550, 564
BsuI	GTATCC	2 cut(s)	278, 407
BsuRI	GGCC	6 cut(s)	71, 77, 89, 368, 596, 613
BtgI	CCRYGG	1 cut(s)	271
BtsCI	GGATG	2 cut(s)	67, 261
BtsIMutI	CAGTG	1 cut(s)	543
Cac8I	GCNNGC	1 cut(s)	87
CaiI	CAGNNNCTG	1 cut(s)	35
Cfr13I	GGNCC	4 cut(s)	69, 88, 578, 612
Csp6I	GTAC	1 cut(s)	154
CviAII	CATG	2 cut(s)	379, 530
CviQI	GTAC	1 cut(s)	154
DdeI	CTNAG	4 cut(s)	159, 240, 246, 546
DpnI	GATC	3 cut(s)	308, 552, 566
DpnII	GATC	3 cut(s)	306, 550, 564
EaeI	YGGCCR	1 cut(s)	75
Eam1104I	CTCTTC	4 cut(s)	41, 47, 422, 647
EarI	CTCTTC	4 cut(s)	41, 47, 422, 647
Ecl136II	GAGCTC	1 cut(s)	712
Eco130I	CCWWGG	1 cut(s)	72
Eco24I	GRGCYC	1 cut(s)	714
Eco47I	GGWCC	1 cut(s)	578
Eco53kI	GAGCTC	1 cut(s)	712
Eco57I	CTGAAG	2 cut(s)	644, 665
EcoICRI	GAGCTC	1 cut(s)	712
EcoO109I	RGGNCCY	1 cut(s)	88
EcoT14I	CCWWGG	1 cut(s)	72
EcoT38I	GRGCYC	1 cut(s)	714
ErhI	CCWWGG	1 cut(s)	72
FaeI	CATG	2 cut(s)	382, 533
FalI	AAGNNNNNCTT	4 cut(s)	293, 325, 356, 388
FatI	CATG	2 cut(s)	378, 529
FauNDI	CATATG	1 cut(s)	400
Fnu4HI	GCNGC	3 cut(s)	99, 117, 314
FokI	GGATG	2 cut(s)	74, 248
FriOI	GRGCYC	1 cut(s)	714
Fsp4HI	GCNGC	3 cut(s)	99, 117, 314
FspBI	CTAG	2 cut(s)	210, 730
GluI	GCNGC	3 cut(s)	99, 117, 314
HaeIII	GGCC	6 cut(s)	71, 77, 89, 368, 596, 613
Hin1II	CATG	2 cut(s)	382, 533
HincII	GTYRAC	1 cut(s)	361
HindII	GTYRAC	1 cut(s)	361
HindIII	AAGCTT	1 cut(s)	128
HinfI	GANTC	3 cut(s)	32, 242, 483
HpaI	GTTAAC	1 cut(s)	361
HphI	GGTGA	1 cut(s)	17
Hpy166II	GTNNAC	2 cut(s)	156, 361
Hpy188I	TCNGA	2 cut(s)	354, 645
Hpy188III	TCNNGA	3 cut(s)	29, 43, 568
Hpy8I	GTNNAC	2 cut(s)	156, 361
HpyAV	CCTTC	3 cut(s)	430, 619, 665
HpyCH4III	ACNGT	2 cut(s)	574, 692
HpyCH4V	TGCA	2 cut(s)	313, 543
HpyF10VI	GCNNNNNNNGC	3 cut(s)	95, 319, 619
HpyF3I	CTNAG	4 cut(s)	159, 240, 246, 546
Hsp92II	CATG	2 cut(s)	382, 533
KspAI	GTTAAC	1 cut(s)	361
Kzo9I	GATC	3 cut(s)	306, 550, 564
LmnI	GCTCC	1 cut(s)	634
LpnPI	CCDG	8 cut(s)	42, 71, 109, 252, 317, 373, 500, 669
Lsp1109I	GCAGC	2 cut(s)	103, 325
LweI	GCATC	1 cut(s)	670
MaeI	CTAG	2 cut(s)	210, 730
MaeIII	GTNAC	1 cut(s)	403
MalI	GATC	3 cut(s)	308, 552, 566
MboI	GATC	3 cut(s)	306, 550, 564
MflI	RGATCY	3 cut(s)	306, 550, 564
MhlI	GDGCHC	1 cut(s)	714
MlsI	TGGCCA	1 cut(s)	77
MluCI	AATT	2 cut(s)	440, 534
MluNI	TGGCCA	1 cut(s)	77
MlyI	GAGTC	2 cut(s)	41, 251
MmeI	TCCRAC	1 cut(s)	556
Mox20I	TGGCCA	1 cut(s)	77
MscI	TGGCCA	1 cut(s)	77
MseI	TTAA	2 cut(s)	360, 618
Msp20I	TGGCCA	1 cut(s)	77
MwoI	GCNNNNNNNGC	3 cut(s)	95, 319, 619
NdeI	CATATG	1 cut(s)	400
NdeII	GATC	3 cut(s)	306, 550, 564
NlaIII	CATG	2 cut(s)	382, 533
NlaIV	GGNNCC	3 cut(s)	27, 630, 659
NmuCI	GTSAC	1 cut(s)	403
NspI	RCATGY	1 cut(s)	382
PfeI	GAWTC	1 cut(s)	483
PflMI	CCANNNNNTGG	1 cut(s)	638
PkrI	GCNGC	3 cut(s)	100, 118, 315
PleI	GAGTC	2 cut(s)	40, 250
PpsI	GAGTC	2 cut(s)	40, 250
Psp124BI	GAGCTC	1 cut(s)	714
PspN4I	GGNNCC	3 cut(s)	27, 630, 659
PspPI	GGNCC	4 cut(s)	69, 88, 578, 612
PstNI	CAGNNNCTG	1 cut(s)	35
PsuI	RGATCY	3 cut(s)	306, 550, 564
RsaI	GTAC	1 cut(s)	155
RsaNI	GTAC	1 cut(s)	154
SacI	GAGCTC	1 cut(s)	714
SaqAI	TTAA	2 cut(s)	360, 618
SatI	GCNGC	3 cut(s)	99, 117, 314
Sau3AI	GATC	3 cut(s)	306, 550, 564
Sau96I	GGNCC	4 cut(s)	69, 88, 578, 612
SchI	GAGTC	2 cut(s)	41, 251
SduI	GDGCHC	1 cut(s)	714
SfaNI	GCATC	1 cut(s)	670
SinI	GGWCC	1 cut(s)	578
SmlI	CTYRAG	1 cut(s)	41
SmoI	CTYRAG	1 cut(s)	41
Sse9I	AATT	2 cut(s)	440, 534
SsiI	CCGC	1 cut(s)	99
SspMI	CTAG	2 cut(s)	210, 730
SstI	GAGCTC	1 cut(s)	714
StyI	CCWWGG	1 cut(s)	72
TaaI	ACNGT	2 cut(s)	574, 692
TaqI	TCGA	1 cut(s)	234
TasI	AATT	2 cut(s)	440, 534
TatI	WGTACW	1 cut(s)	153
TauI	GCSGC	1 cut(s)	101
TfiI	GAWTC	1 cut(s)	483
Tru1I	TTAA	2 cut(s)	360, 618
Tru9I	TTAA	2 cut(s)	360, 618
TscAI	CASTG	1 cut(s)	550
TseFI	GTSAC	1 cut(s)	403
TseI	GCWGC	2 cut(s)	116, 313
Tsp45I	GTSAC	1 cut(s)	403
TspDTI	ATGAA	1 cut(s)	78
TspGWI	ACGGA	2 cut(s)	254, 260
TspRI	CASTG	1 cut(s)	550
Van91I	CCANNNNNTGG	1 cut(s)	638
VpaK11BI	GGWCC	1 cut(s)	578
XceI	RCATGY	1 cut(s)	382
XspI	CTAG	2 cut(s)	210, 730

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.